RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 A0A087WZG4 1122 aa3.4□□□□□ -1.87
HMGB1-208ENST00000490788 LRRC10BA6NIK2 292 aa3.4□□□□□ -1.87
HMGB1-208ENST00000490788 RBAK-RBAKDNI3L0D1 243 aa3.4□□□□□ -1.87
HMGB1-208ENST00000490788 NOP56O00567 594 aaKnown RBP3.4□□□□□ -1.87
HMGB1-208ENST00000490788 SMAD7O15105 426 aaKnown RBP3.4□□□□□ -1.87
HMGB1-208ENST00000490788 DDAH1O94760 285 aa3.4□□□□□ -1.87
HMGB1-208ENST00000490788 GSTM1P09488 218 aa3.4□□□□□ -1.87
HMGB1-208ENST00000490788 ZGLP1P0C6A0 271 aa3.4□□□□□ -1.87
HMGB1-208ENST00000490788 CASP7P55210 303 aa3.4□□□□□ -1.87
HMGB1-208ENST00000490788 ZNF445P59923 1031 aa3.4□□□□□ -1.87
HMGB1-208ENST00000490788 PKN1Q16512 942 aa3.4□□□□□ -1.87
HMGB1-208ENST00000490788 FXNQ16595 210 aa3.4□□□□□ -1.87
HMGB1-208ENST00000490788 ZNF648Q5T619 568 aaPredicted RBP3.4□□□□□ -1.87
HMGB1-208ENST00000490788 POMZP3Q6PJE2 187 aa3.4□□□□□ -1.87
HMGB1-208ENST00000490788 CRTC3Q6UUV7 619 aa3.4□□□□□ -1.87
HMGB1-208ENST00000490788 CEP128Q6ZU80 1094 aa3.4□□□□□ -1.87
HMGB1-208ENST00000490788 PPFIBP1Q86W92 1011 aa3.4□□□□□ -1.87
HMGB1-208ENST00000490788 JAMLQ86YT9 394 aa3.4□□□□□ -1.87
HMGB1-208ENST00000490788 FIBCD1Q8N539 461 aa3.4□□□□□ -1.87
HMGB1-208ENST00000490788 SLC43A3Q8NBI5 491 aa3.4□□□□□ -1.87
HMGB1-208ENST00000490788 BHLHE22Q8NFJ8 381 aaPredicted RBP3.4□□□□□ -1.87
HMGB1-208ENST00000490788 ADCY4Q8NFM4 1077 aa3.4□□□□□ -1.87
HMGB1-208ENST00000490788 FCRL2Q96LA5 508 aaPredicted RBP3.4□□□□□ -1.87
HMGB1-208ENST00000490788 APBA2Q99767 749 aa3.4□□□□□ -1.87
HMGB1-208ENST00000490788 TINF2Q9BSI4 451 aa3.4□□□□□ -1.87
HMGB1-208ENST00000490788 CWC22Q9HCG8 908 aaKnown RBP3.4□□□□□ -1.87
HMGB1-208ENST00000490788 LRP2BPQ9P2M1 347 aa3.4□□□□□ -1.87
HMGB1-208ENST00000490788 PRKAG3Q9UGI9 489 aa3.4□□□□□ -1.87
HMGB1-208ENST00000490788 MINPP1Q9UNW1 487 aa3.4□□□□□ -1.87
HMGB1-208ENST00000490788 DIS3Q9Y2L1 958 aaKnown RBP3.4□□□□□ -1.87
HMGB1-208ENST00000490788 ZNF451Q9Y4E5 1061 aa3.4□□□□□ -1.87
HMGB1-208ENST00000490788 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP3.4□□□□□ -1.87
HMGB1-208ENST00000490788 LTBP3Q9NS15 1303 aa3.4□□□□□ -1.87
HMGB1-208ENST00000490788 CARMIL2Q6F5E8 1435 aa3.39□□□□□ -1.87
HMGB1-208ENST00000490788 A0A1W2PQJ5 194 aa3.39□□□□□ -1.87
HMGB1-208ENST00000490788 ANKRD34BA5PLL1 514 aa3.39□□□□□ -1.87
HMGB1-208ENST00000490788 H0Y8X5 98 aa3.39□□□□□ -1.87
HMGB1-208ENST00000490788 AGRPO00253 132 aa3.39□□□□□ -1.87
HMGB1-208ENST00000490788 U2SURPO15042 1029 aaKnown RBP3.39□□□□□ -1.87
HMGB1-208ENST00000490788 USP2O75604 605 aaPredicted RBP3.39□□□□□ -1.87
HMGB1-208ENST00000490788 STK10O94804 968 aaKnown RBP3.39□□□□□ -1.87
HMGB1-208ENST00000490788 ZNF205O95201 554 aa3.39□□□□□ -1.87
HMGB1-208ENST00000490788 HPXP02790 462 aa3.39□□□□□ -1.87
HMGB1-208ENST00000490788 EPHX1P07099 455 aa3.39□□□□□ -1.87
HMGB1-208ENST00000490788 CD3EP07766 207 aa3.39□□□□□ -1.87
HMGB1-208ENST00000490788 VAV1P15498 845 aa3.39□□□□□ -1.87
HMGB1-208ENST00000490788 TRHRP34981 398 aaPredicted RBP3.39□□□□□ -1.87
HMGB1-208ENST00000490788 PDE6BP35913 854 aa3.39□□□□□ -1.87
HMGB1-208ENST00000490788 ARL4AP40617 200 aa3.39□□□□□ -1.87
HMGB1-208ENST00000490788 KIR2DL1P43626 348 aaPredicted RBP3.39□□□□□ -1.87
HMGB1-208ENST00000490788 KIR2DL2P43627 348 aaPredicted RBP3.39□□□□□ -1.87
HMGB1-208ENST00000490788 ERVFC1P60507 584 aa3.39□□□□□ -1.87
HMGB1-208ENST00000490788 MLANAQ16655 118 aa3.39□□□□□ -1.87
HMGB1-208ENST00000490788 NAALADL2Q58DX5 795 aa3.39□□□□□ -1.87
HMGB1-208ENST00000490788 FYB2Q5VWT5 728 aa3.39□□□□□ -1.87
HMGB1-208ENST00000490788 KSR1Q8IVT5 923 aa3.39□□□□□ -1.87
HMGB1-208ENST00000490788 FAM169BQ8N8A8 192 aa3.39□□□□□ -1.87
HMGB1-208ENST00000490788 MAP6Q96JE9 813 aa3.39□□□□□ -1.87
HMGB1-208ENST00000490788 FGD4Q96M96 766 aa3.39□□□□□ -1.87
HMGB1-208ENST00000490788 SLC6A17Q9H1V8 727 aa3.39□□□□□ -1.87
HMGB1-208ENST00000490788 C19orf44Q9H6X5 657 aa3.39□□□□□ -1.87
HMGB1-208ENST00000490788 C19orf73Q9NVV2 129 aa3.39□□□□□ -1.87
HMGB1-208ENST00000490788 TNFRSF10DQ9UBN6 386 aa3.39□□□□□ -1.87
HMGB1-208ENST00000490788 TAF6LQ9Y6J9 622 aa3.39□□□□□ -1.87
HMGB1-208ENST00000490788 WTIPA6NIX2 430 aaPredicted RBP3.38□□□□□ -1.87
HMGB1-208ENST00000490788 SHOXO15266 292 aa3.38□□□□□ -1.87
HMGB1-208ENST00000490788 TBC1D8O95759 1140 aa3.38□□□□□ -1.87
HMGB1-208ENST00000490788 ATP2B1P20020 1258 aa3.38□□□□□ -1.87
HMGB1-208ENST00000490788 ETFBP38117 255 aa3.38□□□□□ -1.87
HMGB1-208ENST00000490788 CTSKP43235 329 aa3.38□□□□□ -1.87
HMGB1-208ENST00000490788 SEPHS1P49903 392 aa3.38□□□□□ -1.87
HMGB1-208ENST00000490788 ZNF143P52747 638 aaPredicted RBP3.38□□□□□ -1.87
HMGB1-208ENST00000490788 RTP1P59025 263 aa3.38□□□□□ -1.87
HMGB1-208ENST00000490788 RBM10P98175 930 aaKnown RBP3.38□□□□□ -1.87
HMGB1-208ENST00000490788 AMPD2Q01433 879 aa3.38□□□□□ -1.87
HMGB1-208ENST00000490788 SNX17Q15036 470 aa3.38□□□□□ -1.87
HMGB1-208ENST00000490788 NR0B2Q15466 257 aa3.38□□□□□ -1.87
HMGB1-208ENST00000490788 ZNF124Q15973 351 aa3.38□□□□□ -1.87
HMGB1-208ENST00000490788 SV2CQ496J9 727 aa3.38□□□□□ -1.87
HMGB1-208ENST00000490788 HLA-DQA1Q5Y7H0 255 aa3.38□□□□□ -1.87
HMGB1-208ENST00000490788 GALNT18Q6P9A2 607 aa3.38□□□□□ -1.87
HMGB1-208ENST00000490788 LILRA6Q6PI73 481 aa3.38□□□□□ -1.87
HMGB1-208ENST00000490788 CYP2R1Q6VVX0 501 aa3.38□□□□□ -1.87
HMGB1-208ENST00000490788 MCF2L2Q86YR7 1114 aa3.38□□□□□ -1.87
HMGB1-208ENST00000490788 FAM178BQ8IXR5 827 aa3.38□□□□□ -1.87
HMGB1-208ENST00000490788 CKAP2LQ8IYA6 745 aa3.38□□□□□ -1.87
HMGB1-208ENST00000490788 LIN37Q96GY3 246 aaPredicted RBP3.38□□□□□ -1.87
HMGB1-208ENST00000490788 DIRC2Q96SL1 478 aa3.38□□□□□ -1.87
HMGB1-208ENST00000490788 TRIM55Q9BYV6 548 aa3.38□□□□□ -1.87
HMGB1-208ENST00000490788 TANGO6Q9C0B7 1094 aa3.38□□□□□ -1.87
HMGB1-208ENST00000490788 KLHL25Q9H0H3 589 aa3.38□□□□□ -1.87
HMGB1-208ENST00000490788 EPB41L4BQ9H329 900 aa3.38□□□□□ -1.87
HMGB1-208ENST00000490788 NSUN3Q9H649 340 aaKnown RBP3.38□□□□□ -1.87
HMGB1-208ENST00000490788 ZNF408Q9H9D4 720 aa3.38□□□□□ -1.87
HMGB1-208ENST00000490788 AP5S1Q9NUS5 200 aa3.38□□□□□ -1.87
HMGB1-208ENST00000490788 AKT3Q9Y243 479 aa3.38□□□□□ -1.87
HMGB1-208ENST00000490788 A0A1W2PQ45 241 aaPredicted RBP3.37□□□□□ -1.87
HMGB1-208ENST00000490788 A0A1W2PQY0 241 aa3.37□□□□□ -1.87
HMGB1-208ENST00000490788 TMEM82A0PJX8 343 aa3.37□□□□□ -1.87
HMGB1-208ENST00000490788 CBFA2T2O43439 604 aa3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms