RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 TLR3O15455 904 aaKnown RBP16.72■□□□□ 0.27
VARS-227ENST00000489979 ZSCAN25Q6NSZ9 544 aa16.72■□□□□ 0.27
VARS-227ENST00000489979 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.72■□□□□ 0.27
VARS-227ENST00000489979 ARMCX2Q7L311 632 aa16.72■□□□□ 0.27
VARS-227ENST00000489979 ATXN2LQ8WWM7 1075 aaKnown RBP16.72■□□□□ 0.27
VARS-227ENST00000489979 KIFC2Q96AC6 838 aa16.72■□□□□ 0.27
VARS-227ENST00000489979 MKNK2Q9HBH9 465 aa16.72■□□□□ 0.27
VARS-227ENST00000489979 THEGQ9P2T0 379 aa16.72■□□□□ 0.27
VARS-227ENST00000489979 CLIP2Q9UDT6 1046 aa16.72■□□□□ 0.27
VARS-227ENST00000489979 CHD9Q3L8U1 2897 aa16.71■□□□□ 0.27
VARS-227ENST00000489979 GBF1Q92538 1859 aa16.71■□□□□ 0.27
VARS-227ENST00000489979 MINDY4BA8MYZ0 360 aa16.71■□□□□ 0.27
VARS-227ENST00000489979 CYP2C18P33260 490 aa16.71■□□□□ 0.27
VARS-227ENST00000489979 HNRNPUQ00839 825 aaKnown RBP eCLIP16.71■□□□□ 0.27
VARS-227ENST00000489979 ADGRE1Q14246 886 aa16.71■□□□□ 0.27
VARS-227ENST00000489979 CCDC85BQ15834 202 aaPredicted RBP16.71■□□□□ 0.27
VARS-227ENST00000489979 SBK1Q52WX2 424 aa16.71■□□□□ 0.27
VARS-227ENST00000489979 CCDC144CPQ8IYA2 1237 aa16.71■□□□□ 0.27
VARS-227ENST00000489979 STRBPQ96SI9 672 aaKnown RBP16.71■□□□□ 0.27
VARS-227ENST00000489979 SLC38A10Q9HBR0 1119 aa16.71■□□□□ 0.27
VARS-227ENST00000489979 IL23AQ9NPF7 189 aa16.71■□□□□ 0.27
VARS-227ENST00000489979 MSRAQ9UJ68 235 aa16.71■□□□□ 0.27
VARS-227ENST00000489979 NCOR1O75376 2440 aa16.71■□□□□ 0.27
VARS-227ENST00000489979 CTAGE5O15320 804 aa16.7■□□□□ 0.26
VARS-227ENST00000489979 CD4P01730 458 aa16.7■□□□□ 0.26
VARS-227ENST00000489979 IGFBP4P22692 258 aa16.7■□□□□ 0.26
VARS-227ENST00000489979 BEX3Q00994 111 aa16.7■□□□□ 0.26
VARS-227ENST00000489979 RAB30Q15771 203 aa16.7■□□□□ 0.26
VARS-227ENST00000489979 CHST13Q8NET6 341 aa16.7■□□□□ 0.26
VARS-227ENST00000489979 HERVK_113Q902F9 699 aa16.7■□□□□ 0.26
VARS-227ENST00000489979 ASB2Q96Q27 587 aa16.7■□□□□ 0.26
VARS-227ENST00000489979 KATNBL1Q9H079 304 aa16.7■□□□□ 0.26
VARS-227ENST00000489979 NKX2-4Q9H2Z4 354 aa16.7■□□□□ 0.26
VARS-227ENST00000489979 CXXC1Q9P0U4 656 aaPredicted RBP16.7■□□□□ 0.26
VARS-227ENST00000489979 FBXO40Q9UH90 709 aa16.7■□□□□ 0.26
VARS-227ENST00000489979 RAPGEFL1Q9UHV5 662 aa16.7■□□□□ 0.26
VARS-227ENST00000489979 IGKV6D-41A0A0C4DH26 115 aa16.69■□□□□ 0.26
VARS-227ENST00000489979 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.69■□□□□ 0.26
VARS-227ENST00000489979 GSG1L2A8MUP6 293 aa16.69■□□□□ 0.26
VARS-227ENST00000489979 NOL8Q76FK4 1167 aaKnown RBP16.69■□□□□ 0.26
VARS-227ENST00000489979 ADAMTS19Q8TE59 1207 aa16.69■□□□□ 0.26
VARS-227ENST00000489979 ZBTB40Q9NUA8 1239 aa16.69■□□□□ 0.26
VARS-227ENST00000489979 FEM1BQ9UK73 627 aa16.69■□□□□ 0.26
VARS-227ENST00000489979 FGBP02675 491 aa16.68■□□□□ 0.26
VARS-227ENST00000489979 NKX3-2P78367 333 aa16.68■□□□□ 0.26
VARS-227ENST00000489979 MRPS5P82675 430 aaKnown RBP16.68■□□□□ 0.26
VARS-227ENST00000489979 CNTN2Q02246 1040 aa16.68■□□□□ 0.26
VARS-227ENST00000489979 CXCL17Q6UXB2 119 aa16.68■□□□□ 0.26
VARS-227ENST00000489979 LRRC47Q8N1G4 583 aaKnown RBP16.68■□□□□ 0.26
VARS-227ENST00000489979 MKL1Q969V6 931 aa16.68■□□□□ 0.26
VARS-227ENST00000489979 CEP95Q96GE4 821 aa16.68■□□□□ 0.26
VARS-227ENST00000489979 MTIF3Q9H2K0 278 aaKnown RBP16.68■□□□□ 0.26
VARS-227ENST00000489979 HOMER2Q9NSB8 354 aa16.68■□□□□ 0.26
VARS-227ENST00000489979 YBX2Q9Y2T7 364 aaKnown RBP16.68■□□□□ 0.26
VARS-227ENST00000489979 ASTN1O14525 1302 aa16.68■□□□□ 0.26
VARS-227ENST00000489979 UMODL1Q5DID0 1318 aa16.68■□□□□ 0.26
VARS-227ENST00000489979 PRDM1O75626 825 aa16.67■□□□□ 0.26
VARS-227ENST00000489979 MS4A1P11836 297 aa16.67■□□□□ 0.26
VARS-227ENST00000489979 OAZ1P54368 228 aa16.67■□□□□ 0.26
VARS-227ENST00000489979 TNFAIP2Q03169 654 aa16.67■□□□□ 0.26
VARS-227ENST00000489979 GIMAP6Q6P9H5 292 aa16.67■□□□□ 0.26
VARS-227ENST00000489979 OTOP2Q7RTS6 562 aa16.67■□□□□ 0.26
VARS-227ENST00000489979 ZNF444Q8N0Y2 327 aaPredicted RBP16.67■□□□□ 0.26
VARS-227ENST00000489979 FAM133AQ8N9E0 248 aa16.67■□□□□ 0.26
VARS-227ENST00000489979 SLC43A3Q8NBI5 491 aa16.67■□□□□ 0.26
VARS-227ENST00000489979 UHRF1Q96T88 793 aaPredicted RBP16.67■□□□□ 0.26
VARS-227ENST00000489979 HIPK3Q9H422 1215 aa16.67■□□□□ 0.26
VARS-227ENST00000489979 SLC28A3Q9HAS3 691 aa16.67■□□□□ 0.26
VARS-227ENST00000489979 DDX19BQ9UMR2 479 aa16.67■□□□□ 0.26
VARS-227ENST00000489979 COG6Q9Y2V7 657 aa16.67■□□□□ 0.26
VARS-227ENST00000489979 CHD7Q9P2D1 2997 aa16.67■□□□□ 0.26
VARS-227ENST00000489979 TCF20Q9UGU0 1960 aaKnown RBP16.66■□□□□ 0.26
VARS-227ENST00000489979 SMARCA5O60264 1052 aaPredicted RBP16.66■□□□□ 0.26
VARS-227ENST00000489979 CABYRO75952 493 aa16.66■□□□□ 0.26
VARS-227ENST00000489979 BMP3P12645 472 aa16.66■□□□□ 0.26
VARS-227ENST00000489979 SLFN13Q68D06 897 aa16.66■□□□□ 0.26
VARS-227ENST00000489979 OSBP2Q969R2 916 aa16.66■□□□□ 0.26
VARS-227ENST00000489979 ACAD9Q9H845 621 aa16.66■□□□□ 0.26
VARS-227ENST00000489979 MTMR4Q9NYA4 1195 aa16.66■□□□□ 0.26
VARS-227ENST00000489979 GNEQ9Y223 722 aaKnown RBP16.66■□□□□ 0.26
VARS-227ENST00000489979 SOWAHBA6NEL2 793 aa16.65■□□□□ 0.26
VARS-227ENST00000489979 TTLL1O95922 423 aa16.65■□□□□ 0.26
VARS-227ENST00000489979 PTGS1P23219 599 aa16.65■□□□□ 0.26
VARS-227ENST00000489979 RABGGTBP53611 331 aa16.65■□□□□ 0.26
VARS-227ENST00000489979 CCL23P55773 120 aa16.65■□□□□ 0.26
VARS-227ENST00000489979 ITGA7Q13683 1181 aa16.65■□□□□ 0.26
VARS-227ENST00000489979 FSCN1Q16658 493 aaKnown RBP16.65■□□□□ 0.26
VARS-227ENST00000489979 TLK2Q86UE8 772 aa16.65■□□□□ 0.26
VARS-227ENST00000489979 GMCL1P1Q8NEA9 526 aa16.65■□□□□ 0.26
VARS-227ENST00000489979 IL27Q8NEV9 243 aa16.65■□□□□ 0.26
VARS-227ENST00000489979 TRPV6Q9H1D0 765 aa16.65■□□□□ 0.26
VARS-227ENST00000489979 EPB41L4AQ9HCS5 686 aaPredicted RBP16.65■□□□□ 0.26
VARS-227ENST00000489979 A1CFQ9NQ94 594 aaKnown RBP16.65■□□□□ 0.26
VARS-227ENST00000489979 ISY1Q9ULR0 285 aaKnown RBP16.65■□□□□ 0.26
VARS-227ENST00000489979 SYNPO2Q9UMS6 1093 aa16.65■□□□□ 0.26
VARS-227ENST00000489979 GRIN2DO15399 1336 aa16.65■□□□□ 0.26
VARS-227ENST00000489979 ASB14A6NK59 587 aa16.64■□□□□ 0.25
VARS-227ENST00000489979 TMEM232C9JQI7 657 aa16.64■□□□□ 0.25
VARS-227ENST00000489979 DYNC1LI2O43237 492 aaPredicted RBP16.64■□□□□ 0.25
VARS-227ENST00000489979 SMPD1P17405 629 aa16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 105.8 ms