RNA–Protein interactions for RNA: YOR054C

VHS3, Transcript of Negative regulatory subunit of protein phosphatase 1 Ppz1p, yeast

Gene VHS3, Length 2,025 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VHS3	YOR054C	PDR8	Q06149	701 aa		4.08	□□□□□ -1.76
VHS3	YOR054C	YNG1	Q08465	219 aa		4.08	□□□□□ -1.76
VHS3	YOR054C	SKI7	Q08491	747 aa	Predicted RBP	4.08	□□□□□ -1.76
VHS3	YOR054C	CSR2	Q12734	1121 aa		4.08	□□□□□ -1.76
VHS3	YOR054C	YOS9	Q99220	542 aa		4.08	□□□□□ -1.76
VHS3	YOR054C	TPK2	P06245	380 aa		4.07	□□□□□ -1.76
VHS3	YOR054C	CBP6	P07253	162 aa	Predicted RBP	4.07	□□□□□ -1.76
VHS3	YOR054C	RAD18	P10862	487 aa		4.07	□□□□□ -1.76
VHS3	YOR054C	RNR3	P21672	869 aa	Known RBP	4.07	□□□□□ -1.76
VHS3	YOR054C	DBP2	P24783	546 aa	Known RBP	4.07	□□□□□ -1.76
VHS3	YOR054C	ITR1	P30605	584 aa		4.07	□□□□□ -1.76
VHS3	YOR054C	MOT2	P34909	587 aa	Known RBP	4.07	□□□□□ -1.76
VHS3	YOR054C	MCM7	P38132	845 aa		4.07	□□□□□ -1.76
VHS3	YOR054C	DUG2	P38149	878 aa		4.07	□□□□□ -1.76
VHS3	YOR054C	ECM13	P38195	257 aa		4.07	□□□□□ -1.76
VHS3	YOR054C	IMD2	P38697	523 aa	Known RBP	4.07	□□□□□ -1.76
VHS3	YOR054C	SBE22	P38814	852 aa		4.07	□□□□□ -1.76
VHS3	YOR054C	NUP82	P40368	713 aa		4.07	□□□□□ -1.76
VHS3	YOR054C	CSM2	P40465	213 aa		4.07	□□□□□ -1.76
VHS3	YOR054C	VHR1	P40522	640 aa		4.07	□□□□□ -1.76
VHS3	YOR054C	FAF1	P40546	346 aa	Predicted RBP	4.07	□□□□□ -1.76
VHS3	YOR054C	GUS1	P46655	708 aa	Known RBP RIP-Chip data	4.07	□□□□□ -1.76	not detected
VHS3	YOR054C	FAR3	P46671	204 aa		4.07	□□□□□ -1.76
VHS3	YOR054C	YMR279C	Q03263	540 aa		4.07	□□□□□ -1.76
VHS3	YOR054C	NGL2	Q03264	515 aa	Known RBP	4.07	□□□□□ -1.76
VHS3	YOR054C	SCS7	Q03529	384 aa		4.07	□□□□□ -1.76
VHS3	YOR054C	KAP95	Q06142	861 aa	Known RBP	4.07	□□□□□ -1.76
VHS3	YOR054C	EAF1	Q06337	982 aa		4.07	□□□□□ -1.76
VHS3	YOR054C	YLR352W	Q06479	807 aa		4.07	□□□□□ -1.76
VHS3	YOR054C	AAD15	Q08361	143 aa		4.07	□□□□□ -1.76
VHS3	YOR054C	YOR131C	Q12486	218 aa		4.07	□□□□□ -1.76
VHS3	YOR054C	BI2	P03873	423 aa		4.07	□□□□□ -1.76
VHS3	YOR054C	NCP1	P16603	691 aa	Known RBP	4.07	□□□□□ -1.76
VHS3	YOR054C	KGD1	P20967	1014 aa	Known RBP	4.07	□□□□□ -1.76
VHS3	YOR054C	CNB1	P25296	175 aa		4.07	□□□□□ -1.76
VHS3	YOR054C	MEI5	P32489	222 aa		4.07	□□□□□ -1.76
VHS3	YOR054C	APE3	P37302	537 aa	Known RBP	4.07	□□□□□ -1.76
VHS3	YOR054C	NCL1	P38205	684 aa	Known RBP	4.07	□□□□□ -1.76
VHS3	YOR054C	YBR137W	P38276	179 aa		4.07	□□□□□ -1.76
VHS3	YOR054C	OTU2	P38747	307 aa	Known RBP	4.07	□□□□□ -1.76
VHS3	YOR054C	EGD2	P38879	174 aa	Known RBP	4.07	□□□□□ -1.76
VHS3	YOR054C	YHR202W	P38887	602 aa		4.07	□□□□□ -1.76
VHS3	YOR054C	SEC31	P38968	1273 aa	Known RBP	4.07	□□□□□ -1.76
VHS3	YOR054C	AIM2	P39721	246 aa		4.07	□□□□□ -1.76
VHS3	YOR054C	VAC8	P39968	578 aa		4.07	□□□□□ -1.76
VHS3	YOR054C	EMP65	P40085	556 aa		4.07	□□□□□ -1.76
VHS3	YOR054C	MEP1	P40260	492 aa		4.07	□□□□□ -1.76
VHS3	YOR054C	SOK1	P40317	901 aa		4.07	□□□□□ -1.76
VHS3	YOR054C	HOC1	P47124	396 aa		4.07	□□□□□ -1.76
VHS3	YOR054C	CTR1	P49573	406 aa		4.07	□□□□□ -1.76
VHS3	YOR054C	HSH155	P49955	971 aa	Known RBP	4.07	□□□□□ -1.76
VHS3	YOR054C	COG1	P53079	417 aa		4.07	□□□□□ -1.76
VHS3	YOR054C	GET1	P53192	235 aa		4.07	□□□□□ -1.76
VHS3	YOR054C	OKP1	P53298	406 aa		4.07	□□□□□ -1.76
VHS3	YOR054C	RPS15	Q01855	142 aa	Known RBP	4.07	□□□□□ -1.76
VHS3	YOR054C	TRM44	Q02648	567 aa	Known RBP	4.07	□□□□□ -1.76
VHS3	YOR054C	YDR514C	Q04408	483 aa		4.07	□□□□□ -1.76
VHS3	YOR054C	FAR10	Q06001	478 aa		4.07	□□□□□ -1.76
VHS3	YOR054C	YEH1	Q07804	573 aa		4.07	□□□□□ -1.76
VHS3	YOR054C	ATP14	Q12349	124 aa		4.07	□□□□□ -1.76
VHS3	YOR054C	YPR1	Q12458	312 aa		4.07	□□□□□ -1.76
VHS3	YOR054C	CMC2	Q3E7A4	109 aa		4.07	□□□□□ -1.76
VHS3	YOR054C	UBR1	P19812	1950 aa		4.06	□□□□□ -1.76
VHS3	YOR054C	TPK3	P05986	398 aa		4.06	□□□□□ -1.76
VHS3	YOR054C	STE3	P06783	470 aa		4.06	□□□□□ -1.76
VHS3	YOR054C	ATG22	P25568	528 aa		4.06	□□□□□ -1.76
VHS3	YOR054C	CAM1	P29547	415 aa	Known RBP	4.06	□□□□□ -1.76
VHS3	YOR054C	DBF4	P32325	704 aa		4.06	□□□□□ -1.76
VHS3	YOR054C	DBF20	P32328	564 aa		4.06	□□□□□ -1.76
VHS3	YOR054C	ANP1	P32629	500 aa		4.06	□□□□□ -1.76
VHS3	YOR054C	WHI3	P34761	661 aa	Known RBP	4.06	□□□□□ -1.76
VHS3	YOR054C	BAP2	P38084	609 aa		4.06	□□□□□ -1.76
VHS3	YOR054C	GIC1	P38785	314 aa		4.06	□□□□□ -1.76
VHS3	YOR054C	CCT3	P39077	534 aa	Known RBP	4.06	□□□□□ -1.76
VHS3	YOR054C	EXO1	P39875	702 aa		4.06	□□□□□ -1.76
VHS3	YOR054C	ECM10	P39987	644 aa		4.06	□□□□□ -1.76
VHS3	YOR054C	TED1	P40533	473 aa		4.06	□□□□□ -1.76
VHS3	YOR054C	TIR3	P40552	269 aa		4.06	□□□□□ -1.76
VHS3	YOR054C	AGP3	P43548	558 aa		4.06	□□□□□ -1.76
VHS3	YOR054C	ROG3	P43602	733 aa		4.06	□□□□□ -1.76
VHS3	YOR054C	SAP4	P53036	818 aa		4.06	□□□□□ -1.76
VHS3	YOR054C	TPN1	P53099	579 aa		4.06	□□□□□ -1.76
VHS3	YOR054C	KXD1	P53158	218 aa		4.06	□□□□□ -1.76
VHS3	YOR054C	PEX8	P53248	589 aa		4.06	□□□□□ -1.76
VHS3	YOR054C	SOL4	P53315	255 aa		4.06	□□□□□ -1.76
VHS3	YOR054C	ARE2	P53629	642 aa	Known RBP	4.06	□□□□□ -1.76
VHS3	YOR054C	EGD1	Q02642	157 aa	Known RBP	4.06	□□□□□ -1.76
VHS3	YOR054C	RMI1	Q02685	241 aa		4.06	□□□□□ -1.76
VHS3	YOR054C	YPL068C	Q02749	293 aa		4.06	□□□□□ -1.76
VHS3	YOR054C	RRP17	Q04031	235 aa	Predicted RBP	4.06	□□□□□ -1.76
VHS3	YOR054C	GIC2	Q06648	383 aa		4.06	□□□□□ -1.76
VHS3	YOR054C	YET3	Q07451	203 aa		4.06	□□□□□ -1.76
VHS3	YOR054C	CBC2	Q08920	208 aa	Known RBP RIP-Chip data	4.06	□□□□□ -1.76	not detected
VHS3	YOR054C	GPM3	Q12326	303 aa		4.06	□□□□□ -1.76
VHS3	YOR054C	STE2	D6VTK4	431 aa		4.05	□□□□□ -1.76
VHS3	YOR054C	TY1A-DR4	O74302	440 aa		4.05	□□□□□ -1.76
VHS3	YOR054C	SCP160	P06105	1222 aa	Known RBP RIP-Chip data	4.05	□□□□□ -1.76	not detected
VHS3	YOR054C	TY1A-H	P0C2I4	478 aa	Known RBP	4.05	□□□□□ -1.76
VHS3	YOR054C	TY1A-A	P0CX57	440 aa		4.05	□□□□□ -1.76
VHS3	YOR054C	TY1A-PR1	P0CX58	440 aa		4.05	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 57.5 ms