RNA–Protein interactions for RNA: ENST00000617771.5

VEGFA-228, Transcript of vascular endothelial growth factor A, human

TSL 1 (best) BASIC

Gene VEGFA, Length 1,116 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VEGFA-228	ENST00000617771	HIP1	O00291	1037 aa		29.84	■■■□□ 2.37
VEGFA-228	ENST00000617771	FGR	P09769	529 aa		29.84	■■■□□ 2.37
VEGFA-228	ENST00000617771	HABP4	Q5JVS0	413 aa	Known RBP	29.84	■■■□□ 2.37
VEGFA-228	ENST00000617771	SNRNP48	Q6IEG0	339 aa	Known RBP	29.84	■■■□□ 2.37
VEGFA-228	ENST00000617771	MAML3	Q96JK9	1138 aa		29.84	■■■□□ 2.37
VEGFA-228	ENST00000617771	TOMM22	Q9NS69	142 aa		29.84	■■■□□ 2.37
VEGFA-228	ENST00000617771	DIAPH3	Q9NSV4	1193 aa		29.84	■■■□□ 2.37
VEGFA-228	ENST00000617771	ISY1	Q9ULR0	285 aa	Known RBP	29.84	■■■□□ 2.37
VEGFA-228	ENST00000617771	ATP2A1	O14983	1001 aa		29.83	■■■□□ 2.37
VEGFA-228	ENST00000617771	CYBA	P13498	195 aa		29.83	■■■□□ 2.37
VEGFA-228	ENST00000617771	GMCL1	Q96IK5	515 aa		29.83	■■■□□ 2.37
VEGFA-228	ENST00000617771	IL17RB	Q9NRM6	502 aa		29.83	■■■□□ 2.37
VEGFA-228	ENST00000617771	TACC3	Q9Y6A5	838 aa		29.83	■■■□□ 2.37
VEGFA-228	ENST00000617771	SLC1A4	P43007	532 aa		29.82	■■■□□ 2.36
VEGFA-228	ENST00000617771	IRX6	P78412	446 aa	Predicted RBP	29.82	■■■□□ 2.36
VEGFA-228	ENST00000617771	SLC38A10	Q9HBR0	1119 aa		29.82	■■■□□ 2.36
VEGFA-228	ENST00000617771	FDX1	P10109	184 aa		29.81	■■■□□ 2.36
VEGFA-228	ENST00000617771	STAT2	P52630	851 aa		29.81	■■■□□ 2.36
VEGFA-228	ENST00000617771	RRP12	Q5JTH9	1297 aa	Known RBP	29.81	■■■□□ 2.36
VEGFA-228	ENST00000617771	FAM160B2	Q86V87	743 aa		29.81	■■■□□ 2.36
VEGFA-228	ENST00000617771	CPXCR1	Q8N123	301 aa		29.81	■■■□□ 2.36
VEGFA-228	ENST00000617771	TRPV1	Q8NER1	839 aa		29.81	■■■□□ 2.36
VEGFA-228	ENST00000617771	COLQ	Q9Y215	455 aa	Predicted RBP	29.81	■■■□□ 2.36
VEGFA-228	ENST00000617771	DIS3	Q9Y2L1	958 aa	Known RBP	29.81	■■■□□ 2.36
VEGFA-228	ENST00000617771	TMEM232	C9JQI7	657 aa		29.8	■■■□□ 2.36
VEGFA-228	ENST00000617771	NMT2	O60551	498 aa		29.8	■■■□□ 2.36
VEGFA-228	ENST00000617771	PGK2	P07205	417 aa		29.8	■■■□□ 2.36
VEGFA-228	ENST00000617771	PC	P11498	1178 aa	Known RBP	29.8	■■■□□ 2.36
VEGFA-228	ENST00000617771	OAZ1	P54368	228 aa		29.8	■■■□□ 2.36
VEGFA-228	ENST00000617771	IK	Q13123	557 aa	Predicted RBP	29.8	■■■□□ 2.36
VEGFA-228	ENST00000617771	CWC27	Q6UX04	472 aa	Known RBP	29.8	■■■□□ 2.36
VEGFA-228	ENST00000617771	CHURC1	Q8WUH1	139 aa		29.8	■■■□□ 2.36
VEGFA-228	ENST00000617771	HAND2	P61296	217 aa		29.79	■■■□□ 2.36
VEGFA-228	ENST00000617771	RAVER2	Q9HCJ3	691 aa	Known RBP	29.79	■■■□□ 2.36
VEGFA-228	ENST00000617771	MCC	P23508	829 aa		29.78	■■■□□ 2.36
VEGFA-228	ENST00000617771	NOV	P48745	357 aa		29.78	■■■□□ 2.36
VEGFA-228	ENST00000617771	SLC4A3	P48751	1232 aa		29.78	■■■□□ 2.36
VEGFA-228	ENST00000617771	ZNF792	Q3KQV3	632 aa		29.78	■■■□□ 2.36
VEGFA-228	ENST00000617771	STAG1	Q8WVM7	1258 aa		29.78	■■■□□ 2.36
VEGFA-228	ENST00000617771	RIPK3	Q9Y572	518 aa		29.78	■■■□□ 2.36
VEGFA-228	ENST00000617771	PFAS	O15067	1338 aa		29.77	■■■□□ 2.36
VEGFA-228	ENST00000617771	SEPT4	O43236	478 aa		29.77	■■■□□ 2.36
VEGFA-228	ENST00000617771	COL6A1	P12109	1028 aa		29.77	■■■□□ 2.36
VEGFA-228	ENST00000617771	AKNAD1	Q5T1N1	836 aa		29.77	■■■□□ 2.36
VEGFA-228	ENST00000617771	CHRDL2	Q6WN34	429 aa		29.77	■■■□□ 2.36
VEGFA-228	ENST00000617771	MFSD6	Q6ZSS7	791 aa		29.77	■■■□□ 2.36
VEGFA-228	ENST00000617771	DDX11	Q96FC9	970 aa		29.77	■■■□□ 2.36
VEGFA-228	ENST00000617771	RNF41	Q9H4P4	317 aa	Predicted RBP	29.77	■■■□□ 2.36
VEGFA-228	ENST00000617771	TCP11L1	Q9NUJ3	509 aa		29.77	■■■□□ 2.36
VEGFA-228	ENST00000617771	FBXO40	Q9UH90	709 aa		29.77	■■■□□ 2.36
VEGFA-228	ENST00000617771	NRBP1	Q9UHY1	535 aa		29.77	■■■□□ 2.36
VEGFA-228	ENST00000617771	PLA2G6	O60733	806 aa		29.76	■■■□□ 2.35
VEGFA-228	ENST00000617771	RCSD1	Q6JBY9	416 aa		29.76	■■■□□ 2.35
VEGFA-228	ENST00000617771	CHMP4C	Q96CF2	233 aa		29.76	■■■□□ 2.35
VEGFA-228	ENST00000617771	TINF2	Q9BSI4	451 aa		29.76	■■■□□ 2.35
VEGFA-228	ENST00000617771	FRMPD3	Q5JV73	1810 aa		29.75	■■■□□ 2.35
VEGFA-228	ENST00000617771	ZNF213	O14771	459 aa		29.75	■■■□□ 2.35
VEGFA-228	ENST00000617771	PDE4A	P27815	886 aa		29.75	■■■□□ 2.35
VEGFA-228	ENST00000617771	PRAMEF19	Q5SWL8	479 aa		29.75	■■■□□ 2.35
VEGFA-228	ENST00000617771	KCTD1	Q719H9	257 aa		29.75	■■■□□ 2.35
VEGFA-228	ENST00000617771	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	29.75	■■■□□ 2.35	5e-6	■□□□□ 9.9
VEGFA-228	ENST00000617771	C7orf61	Q8IZ16	206 aa		29.75	■■■□□ 2.35
VEGFA-228	ENST00000617771	CHST13	Q8NET6	341 aa		29.75	■■■□□ 2.35
VEGFA-228	ENST00000617771	TOP1	P11387	765 aa	Known RBP	29.74	■■■□□ 2.35
VEGFA-228	ENST00000617771	DCAF4	Q8WV16	495 aa		29.74	■■■□□ 2.35
VEGFA-228	ENST00000617771	MTMR7	Q9Y216	660 aa		29.74	■■■□□ 2.35
VEGFA-228	ENST00000617771	ZNFX1	Q9P2E3	1918 aa	Known RBP	29.74	■■■□□ 2.35
VEGFA-228	ENST00000617771	DNM1L	O00429	736 aa		29.73	■■■□□ 2.35
VEGFA-228	ENST00000617771	TTC22	Q5TAA0	569 aa		29.73	■■■□□ 2.35
VEGFA-228	ENST00000617771	TBC1D10C	Q8IV04	446 aa		29.73	■■■□□ 2.35
VEGFA-228	ENST00000617771	MSL3	Q8N5Y2	521 aa	Known RBP	29.73	■■■□□ 2.35
VEGFA-228	ENST00000617771	ARRDC4	Q8NCT1	418 aa		29.73	■■■□□ 2.35
VEGFA-228	ENST00000617771	NT5C2	P49902	561 aa		29.72	■■■□□ 2.35
VEGFA-228	ENST00000617771	CCDC96	Q2M329	555 aa		29.72	■■■□□ 2.35
VEGFA-228	ENST00000617771	ANKRD35	Q8N283	1001 aa		29.72	■■■□□ 2.35
VEGFA-228	ENST00000617771	ESR2	Q92731	530 aa		29.72	■■■□□ 2.35
VEGFA-228	ENST00000617771	TMEM47	Q9BQJ4	181 aa		29.72	■■■□□ 2.35
VEGFA-228	ENST00000617771	DSCC1	Q9BVC3	393 aa		29.72	■■■□□ 2.35
VEGFA-228	ENST00000617771	ALPK3	Q96L96	1907 aa		29.72	■■■□□ 2.35
VEGFA-228	ENST00000617771	DNAJC25-GNG10	A0A024R161	153 aa		29.71	■■■□□ 2.35
VEGFA-228	ENST00000617771	ANO1	Q5XXA6	986 aa		29.71	■■■□□ 2.35
VEGFA-228	ENST00000617771	TTC14	Q96N46	770 aa		29.71	■■■□□ 2.35
VEGFA-228	ENST00000617771	CNPY2	Q9Y2B0	182 aa		29.71	■■■□□ 2.35
VEGFA-228	ENST00000617771	PLXNA1	Q9UIW2	1896 aa		29.7	■■■□□ 2.35
VEGFA-228	ENST00000617771	GSPT1	P15170	499 aa	Known RBP	29.7	■■■□□ 2.35
VEGFA-228	ENST00000617771	SENP6	Q9GZR1	1112 aa	Predicted RBP	29.7	■■■□□ 2.35
VEGFA-228	ENST00000617771	ACAD9	Q9H845	621 aa		29.7	■■■□□ 2.35
VEGFA-228	ENST00000617771	CTNNA3	Q9UI47	895 aa		29.7	■■■□□ 2.35
VEGFA-228	ENST00000617771	PRR12	Q9ULL5	1215 aa		29.7	■■■□□ 2.35
VEGFA-228	ENST00000617771	SYNGAP1	Q96PV0	1343 aa		29.7	■■■□□ 2.34
VEGFA-228	ENST00000617771	KBTBD13	C9JR72	458 aa		29.69	■■■□□ 2.34
VEGFA-228	ENST00000617771	TKFC	Q3LXA3	575 aa		29.69	■■■□□ 2.34
VEGFA-228	ENST00000617771	ZNF467	Q7Z7K2	595 aa	Predicted RBP	29.69	■■■□□ 2.34
VEGFA-228	ENST00000617771	HOMER2	Q9NSB8	354 aa		29.69	■■■□□ 2.34
VEGFA-228	ENST00000617771	RBM27	Q9P2N5	1060 aa	Known RBP	29.69	■■■□□ 2.34
VEGFA-228	ENST00000617771	NEDD4	P46934	1319 aa		29.69	■■■□□ 2.34
VEGFA-228	ENST00000617771	IMMT	Q16891	758 aa	Known RBP	29.68	■■■□□ 2.34
VEGFA-228	ENST00000617771	GJC2	Q5T442	439 aa	Predicted RBP	29.68	■■■□□ 2.34
VEGFA-228	ENST00000617771	RASGRP2	Q7LDG7	609 aa		29.68	■■■□□ 2.34
VEGFA-228	ENST00000617771	AGBL1	Q96MI9	1066 aa		29.68	■■■□□ 2.34

Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms