RNA–Protein interactions for RNA: ENST00000601919.5

SSBP4-212, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 5

Gene SSBP4, Length 492 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-212ENST00000601919 OPTNQ96CV9 577 aa21.47■■□□□ 1.03
SSBP4-212ENST00000601919 VAT1LQ9HCJ6 419 aa21.47■■□□□ 1.03
SSBP4-212ENST00000601919 hCG_1984214I3L0E3 225 aa21.46■■□□□ 1.03
SSBP4-212ENST00000601919 VCAM1P19320 739 aa21.46■■□□□ 1.03
SSBP4-212ENST00000601919 SLC16A2P36021 539 aa21.46■■□□□ 1.03
SSBP4-212ENST00000601919 HMGCS2P54868 508 aa21.46■■□□□ 1.03
SSBP4-212ENST00000601919 ZNF713Q8N859 430 aaPredicted RBP21.46■■□□□ 1.03
SSBP4-212ENST00000601919 FBXO18Q8NFZ0 1043 aa21.46■■□□□ 1.03
SSBP4-212ENST00000601919 SH3GLB2Q9NR46 395 aa21.46■■□□□ 1.03
SSBP4-212ENST00000601919 PNMA6FA0A0J9YX94 578 aa21.45■■□□□ 1.02
SSBP4-212ENST00000601919 BRD1O95696 1058 aa21.45■■□□□ 1.02
SSBP4-212ENST00000601919 ZSCAN22P10073 491 aaPredicted RBP21.45■■□□□ 1.02
SSBP4-212ENST00000601919 TRAF1Q13077 416 aa21.45■■□□□ 1.02
SSBP4-212ENST00000601919 PKN1Q16512 942 aa21.45■■□□□ 1.02
SSBP4-212ENST00000601919 CST9Q5W186 159 aa21.45■■□□□ 1.02
SSBP4-212ENST00000601919 HOMER1Q86YM7 354 aa21.45■■□□□ 1.02
SSBP4-212ENST00000601919 CCDC12Q8WUD4 166 aaPredicted RBP21.45■■□□□ 1.02
SSBP4-212ENST00000601919 PIBF1Q8WXW3 757 aa21.45■■□□□ 1.02
SSBP4-212ENST00000601919 MTMR8Q96EF0 704 aa21.45■■□□□ 1.02
SSBP4-212ENST00000601919 TANGO6Q9C0B7 1094 aa21.45■■□□□ 1.02
SSBP4-212ENST00000601919 CPVLQ9H3G5 476 aa21.45■■□□□ 1.02
SSBP4-212ENST00000601919 JMJD4Q9H9V9 463 aa21.45■■□□□ 1.02
SSBP4-212ENST00000601919 KCNH4Q9UQ05 1017 aa21.45■■□□□ 1.02
SSBP4-212ENST00000601919 PASKQ96RG2 1323 aa21.45■■□□□ 1.02
SSBP4-212ENST00000601919 IRF6O14896 467 aa21.44■■□□□ 1.02
SSBP4-212ENST00000601919 ZBTB5O15062 677 aa21.44■■□□□ 1.02
SSBP4-212ENST00000601919 SAFBQ15424 915 aaKnown RBP eCLIP21.44■■□□□ 1.02
SSBP4-212ENST00000601919 SLC35G1Q2M3R5 365 aa21.44■■□□□ 1.02
SSBP4-212ENST00000601919 FASTKD5Q7L8L6 764 aaKnown RBP21.44■■□□□ 1.02
SSBP4-212ENST00000601919 PRPF38AQ8NAV1 312 aaKnown RBP21.44■■□□□ 1.02
SSBP4-212ENST00000601919 PROCA1Q8NCQ7 364 aaPredicted RBP21.44■■□□□ 1.02
SSBP4-212ENST00000601919 CCDC148Q8NFR7 591 aa21.44■■□□□ 1.02
SSBP4-212ENST00000601919 CNKSR2Q8WXI2 1034 aa21.44■■□□□ 1.02
SSBP4-212ENST00000601919 PIGSQ96S52 555 aa21.44■■□□□ 1.02
SSBP4-212ENST00000601919 SLF1Q9BQI6 1058 aa21.44■■□□□ 1.02
SSBP4-212ENST00000601919 RPAP3Q9H6T3 665 aaPredicted RBP21.44■■□□□ 1.02
SSBP4-212ENST00000601919 MTMR6Q9Y217 621 aa21.44■■□□□ 1.02
SSBP4-212ENST00000601919 ATP6V1DQ9Y5K8 247 aa21.44■■□□□ 1.02
SSBP4-212ENST00000601919 LOC285556D6RIA3 1793 aa21.43■■□□□ 1.02
SSBP4-212ENST00000601919 A0A0G2JLL6 359 aaPredicted RBP21.43■■□□□ 1.02
SSBP4-212ENST00000601919 hCG_1642624A0A1W2PR95 340 aa21.43■■□□□ 1.02
SSBP4-212ENST00000601919 FDX1P10109 184 aa21.43■■□□□ 1.02
SSBP4-212ENST00000601919 FOSBP53539 338 aa21.43■■□□□ 1.02
SSBP4-212ENST00000601919 FSTL1Q12841 308 aa21.43■■□□□ 1.02
SSBP4-212ENST00000601919 SNAPC2Q13487 334 aa21.43■■□□□ 1.02
SSBP4-212ENST00000601919 PRRT2Q7Z6L0 340 aaPredicted RBP21.43■■□□□ 1.02
SSBP4-212ENST00000601919 AIFM3Q96NN9 605 aa21.43■■□□□ 1.02
SSBP4-212ENST00000601919 PRR12Q9ULL5 1215 aa21.43■■□□□ 1.02
SSBP4-212ENST00000601919 USP17L15C9J2P7 530 aa21.42■■□□□ 1.02
SSBP4-212ENST00000601919 USP17L13C9JLJ4 530 aa21.42■■□□□ 1.02
SSBP4-212ENST00000601919 USP17L11C9JVI0 530 aa21.42■■□□□ 1.02
SSBP4-212ENST00000601919 USP17L18D6R9N7 530 aa21.42■■□□□ 1.02
SSBP4-212ENST00000601919 USP17L22D6RA61 530 aa21.42■■□□□ 1.02
SSBP4-212ENST00000601919 USP17L17D6RBQ6 530 aa21.42■■□□□ 1.02
SSBP4-212ENST00000601919 USP17L19D6RCP7 530 aa21.42■■□□□ 1.02
SSBP4-212ENST00000601919 USP17L20D6RJB6 530 aa21.42■■□□□ 1.02
SSBP4-212ENST00000601919 FLOT1O75955 427 aa21.42■■□□□ 1.02
SSBP4-212ENST00000601919 CALML3P27482 149 aa21.42■■□□□ 1.02
SSBP4-212ENST00000601919 HUNKP57058 714 aa21.42■■□□□ 1.02
SSBP4-212ENST00000601919 USP17L24Q0WX57 530 aa21.42■■□□□ 1.02
SSBP4-212ENST00000601919 PKP1Q13835 747 aa21.42■■□□□ 1.02
SSBP4-212ENST00000601919 CDC37Q16543 378 aaPredicted RBP21.42■■□□□ 1.02
SSBP4-212ENST00000601919 KRT40Q6A162 431 aa21.42■■□□□ 1.02
SSBP4-212ENST00000601919 HEATR3Q7Z4Q2 680 aa21.42■■□□□ 1.02
SSBP4-212ENST00000601919 WNK4Q96J92 1243 aa21.42■■□□□ 1.02
SSBP4-212ENST00000601919 BRMS1Q9HCU9 246 aa21.42■■□□□ 1.02
SSBP4-212ENST00000601919 BARHL2Q9NY43 387 aa21.42■■□□□ 1.02
SSBP4-212ENST00000601919 PNMA2Q9UL42 364 aa21.42■■□□□ 1.02
SSBP4-212ENST00000601919 ZBTB48P10074 688 aaPredicted RBP21.41■■□□□ 1.02
SSBP4-212ENST00000601919 PABPC4Q13310 644 aaKnown RBP eCLIP21.41■■□□□ 1.023e-7■■□□□ 12.7
SSBP4-212ENST00000601919 GALNT17Q6IS24 598 aa21.41■■□□□ 1.02
SSBP4-212ENST00000601919 KIFC2Q96AC6 838 aa21.41■■□□□ 1.02
SSBP4-212ENST00000601919 ZSCAN16Q9H4T2 348 aaPredicted RBP21.41■■□□□ 1.02
SSBP4-212ENST00000601919 VPS54Q9P1Q0 977 aa21.41■■□□□ 1.02
SSBP4-212ENST00000601919 CTDP1Q9Y5B0 961 aaPredicted RBP21.41■■□□□ 1.02
SSBP4-212ENST00000601919 MYPNQ86TC9 1320 aa21.4■■□□□ 1.02
SSBP4-212ENST00000601919 F13A1P00488 732 aa21.4■■□□□ 1.02
SSBP4-212ENST00000601919 GTF2A2P52657 109 aa21.4■■□□□ 1.02
SSBP4-212ENST00000601919 GUCY1B3Q02153 619 aa21.4■■□□□ 1.02
SSBP4-212ENST00000601919 GNL2Q13823 731 aaKnown RBP21.4■■□□□ 1.02
SSBP4-212ENST00000601919 QRICH1Q2TAL8 776 aa21.4■■□□□ 1.02
SSBP4-212ENST00000601919 WWC2Q6AWC2 1192 aa21.4■■□□□ 1.02
SSBP4-212ENST00000601919 MCTP1Q6DN14 999 aa21.4■■□□□ 1.02
SSBP4-212ENST00000601919 PPP1R18Q6NYC8 613 aa21.4■■□□□ 1.02
SSBP4-212ENST00000601919 GADL1Q6ZQY3 521 aa21.4■■□□□ 1.02
SSBP4-212ENST00000601919 ZNF784Q8NCA9 323 aaPredicted RBP21.4■■□□□ 1.02
SSBP4-212ENST00000601919 AMNQ9BXJ7 453 aa21.4■■□□□ 1.02
SSBP4-212ENST00000601919 PPP1R9AQ9ULJ8 1098 aa21.4■■□□□ 1.02
SSBP4-212ENST00000601919 ZDHHC9Q9Y397 364 aa21.4■■□□□ 1.02
SSBP4-212ENST00000601919 PARP14Q460N5 1801 aa21.39■■□□□ 1.02
SSBP4-212ENST00000601919 MMP1P03956 469 aa21.39■■□□□ 1.01
SSBP4-212ENST00000601919 NAPAP54920 295 aa21.39■■□□□ 1.01
SSBP4-212ENST00000601919 NLRP5P59047 1200 aa21.39■■□□□ 1.01
SSBP4-212ENST00000601919 COG2Q14746 738 aa21.39■■□□□ 1.01
SSBP4-212ENST00000601919 CATSPERGQ6ZRH7 1159 aa21.39■■□□□ 1.01
SSBP4-212ENST00000601919 FBXO11Q86XK2 927 aa21.39■■□□□ 1.01
SSBP4-212ENST00000601919 GPKOWQ92917 476 aaPredicted RBP eCLIP21.39■■□□□ 1.01
SSBP4-212ENST00000601919 PHF20Q9BVI0 1012 aa21.39■■□□□ 1.01
SSBP4-212ENST00000601919 RANBP17Q9H2T7 1088 aaKnown RBP21.39■■□□□ 1.01
SSBP4-212ENST00000601919 HOXC10Q9NYD6 342 aa21.39■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms