RNA–Protein interactions for RNA: ENST00000594298.5

SHKBP1-203, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 716 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-203ENST00000594298 PRPF38AQ8NAV1 312 aaKnown RBP20.92■□□□□ 0.94
SHKBP1-203ENST00000594298 BADQ92934 168 aa20.92■□□□□ 0.94
SHKBP1-203ENST00000594298 GUCD1Q96NT3 240 aa20.92■□□□□ 0.94
SHKBP1-203ENST00000594298 NUP88Q99567 741 aaPredicted RBP20.92■□□□□ 0.94
SHKBP1-203ENST00000594298 SYNPO2Q9UMS6 1093 aa20.92■□□□□ 0.94
SHKBP1-203ENST00000594298 TRIM43BA6NCK2 446 aa20.91■□□□□ 0.94
SHKBP1-203ENST00000594298 MINDY4BA8MYZ0 360 aa20.91■□□□□ 0.94
SHKBP1-203ENST00000594298 GPAA1O43292 621 aa20.91■□□□□ 0.94
SHKBP1-203ENST00000594298 PGK1P00558 417 aa20.91■□□□□ 0.94
SHKBP1-203ENST00000594298 IGHDP01880 384 aa20.91■□□□□ 0.94
SHKBP1-203ENST00000594298 SH3RF1Q7Z6J0 888 aa20.91■□□□□ 0.94
SHKBP1-203ENST00000594298 MKL1Q969V6 931 aa20.91■□□□□ 0.94
SHKBP1-203ENST00000594298 TRIM43Q96BQ3 446 aaPredicted RBP20.91■□□□□ 0.94
SHKBP1-203ENST00000594298 SYNGAP1Q96PV0 1343 aa20.91■□□□□ 0.94
SHKBP1-203ENST00000594298 ZNF287Q9HBT7 754 aa20.91■□□□□ 0.94
SHKBP1-203ENST00000594298 EPB41L4AQ9HCS5 686 aaPredicted RBP20.91■□□□□ 0.94
SHKBP1-203ENST00000594298 CNPY2Q9Y2B0 182 aa20.91■□□□□ 0.94
SHKBP1-203ENST00000594298 TACC3Q9Y6A5 838 aa20.91■□□□□ 0.94
SHKBP1-203ENST00000594298 DNAJC25-GNG10A0A024R161 153 aa20.9■□□□□ 0.94
SHKBP1-203ENST00000594298 ADAMTS4O75173 837 aa20.9■□□□□ 0.94
SHKBP1-203ENST00000594298 TLE2Q04725 743 aa20.9■□□□□ 0.94
SHKBP1-203ENST00000594298 C9orf50Q5SZB4 431 aa20.9■□□□□ 0.94
SHKBP1-203ENST00000594298 SNRNP48Q6IEG0 339 aaKnown RBP20.9■□□□□ 0.94
SHKBP1-203ENST00000594298 MAMDC4Q6UXC1 1216 aa20.9■□□□□ 0.94
SHKBP1-203ENST00000594298 DHX30Q7L2E3 1194 aaKnown RBP eCLIP20.9■□□□□ 0.94
SHKBP1-203ENST00000594298 ZNF467Q7Z7K2 595 aaPredicted RBP20.9■□□□□ 0.94
SHKBP1-203ENST00000594298 TSEN34Q9BSV6 310 aaKnown RBP20.9■□□□□ 0.94
SHKBP1-203ENST00000594298 CLIP2Q9UDT6 1046 aa20.9■□□□□ 0.94
SHKBP1-203ENST00000594298 RIPK3Q9Y572 518 aa20.9■□□□□ 0.94
SHKBP1-203ENST00000594298 COL11A1P12107 1806 aaPredicted RBP20.9■□□□□ 0.94
SHKBP1-203ENST00000594298 ZNF697Q5TEC3 545 aa20.89■□□□□ 0.93
SHKBP1-203ENST00000594298 B4GALNT3Q6L9W6 998 aa20.89■□□□□ 0.93
SHKBP1-203ENST00000594298 ZNF444Q8N0Y2 327 aaPredicted RBP20.89■□□□□ 0.93
SHKBP1-203ENST00000594298 STK11IPQ8N1F8 1099 aa20.89■□□□□ 0.93
SHKBP1-203ENST00000594298 A0A1W2PQ45 241 aaPredicted RBP20.88■□□□□ 0.93
SHKBP1-203ENST00000594298 A0A1W2PQY0 241 aa20.88■□□□□ 0.93
SHKBP1-203ENST00000594298 PATL2C9JE40 543 aaKnown RBP20.88■□□□□ 0.93
SHKBP1-203ENST00000594298 ZBED4O75132 1171 aa20.88■□□□□ 0.93
SHKBP1-203ENST00000594298 CLTBP09497 229 aa20.88■□□□□ 0.93
SHKBP1-203ENST00000594298 TDO2P48775 406 aa20.88■□□□□ 0.93
SHKBP1-203ENST00000594298 TSHZ3Q63HK5 1081 aa20.88■□□□□ 0.93
SHKBP1-203ENST00000594298 CHD1LQ86WJ1 897 aa20.88■□□□□ 0.93
SHKBP1-203ENST00000594298 GMCL1P1Q8NEA9 526 aa20.88■□□□□ 0.93
SHKBP1-203ENST00000594298 OTUD7AQ8TE49 926 aaPredicted RBP20.88■□□□□ 0.93
SHKBP1-203ENST00000594298 DDX11Q96FC9 970 aa20.88■□□□□ 0.93
SHKBP1-203ENST00000594298 SLC38A10Q9HBR0 1119 aa20.88■□□□□ 0.93
SHKBP1-203ENST00000594298 MTMR4Q9NYA4 1195 aa20.88■□□□□ 0.93
SHKBP1-203ENST00000594298 FEM1BQ9UK73 627 aa20.88■□□□□ 0.93
SHKBP1-203ENST00000594298 FAM184BQ9ULE4 1060 aa20.88■□□□□ 0.93
SHKBP1-203ENST00000594298 PLIN4Q96Q06 1357 aa20.87■□□□□ 0.93
SHKBP1-203ENST00000594298 M0R2C6 588 aa20.87■□□□□ 0.93
SHKBP1-203ENST00000594298 KIAA0355O15063 1070 aa20.87■□□□□ 0.93
SHKBP1-203ENST00000594298 SNAI1O95863 264 aaPredicted RBP20.87■□□□□ 0.93
SHKBP1-203ENST00000594298 OAZ1P54368 228 aa20.87■□□□□ 0.93
SHKBP1-203ENST00000594298 SMAD3P84022 425 aaKnown RBP20.87■□□□□ 0.93
SHKBP1-203ENST00000594298 NUCB1Q02818 461 aa20.87■□□□□ 0.93
SHKBP1-203ENST00000594298 ANKRD33Q7Z3H0 272 aa20.87■□□□□ 0.93
SHKBP1-203ENST00000594298 KLHDC9Q8NEP7 349 aa20.87■□□□□ 0.93
SHKBP1-203ENST00000594298 PI4K2BQ8TCG2 481 aa20.87■□□□□ 0.93
SHKBP1-203ENST00000594298 CEP95Q96GE4 821 aa20.87■□□□□ 0.93
SHKBP1-203ENST00000594298 LNPKQ9C0E8 428 aa20.87■□□□□ 0.93
SHKBP1-203ENST00000594298 SYNRGQ9UMZ2 1314 aa20.86■□□□□ 0.93
SHKBP1-203ENST00000594298 MOXD2PA6NHM9 499 aa20.86■□□□□ 0.93
SHKBP1-203ENST00000594298 PRDM1O75626 825 aa20.86■□□□□ 0.93
SHKBP1-203ENST00000594298 TTLL1O95922 423 aa20.86■□□□□ 0.93
SHKBP1-203ENST00000594298 APPP05067 770 aa20.86■□□□□ 0.93
SHKBP1-203ENST00000594298 ITGB8P26012 769 aa20.86■□□□□ 0.93
SHKBP1-203ENST00000594298 ACLYP53396 1101 aa20.86■□□□□ 0.93
SHKBP1-203ENST00000594298 IFNL3Q8IZI9 196 aa20.86■□□□□ 0.93
SHKBP1-203ENST00000594298 LENG1Q96BZ8 264 aaPredicted RBP20.86■□□□□ 0.93
SHKBP1-203ENST00000594298 FAM161BQ96MY7 647 aa20.86■□□□□ 0.93
SHKBP1-203ENST00000594298 TOX2Q96NM4 488 aa20.86■□□□□ 0.93
SHKBP1-203ENST00000594298 SALL3Q9BXA9 1300 aa20.85■□□□□ 0.93
SHKBP1-203ENST00000594298 ZNFX1Q9P2E3 1918 aaKnown RBP20.85■□□□□ 0.93
SHKBP1-203ENST00000594298 DUSP11O75319 330 aaKnown RBP20.85■□□□□ 0.93
SHKBP1-203ENST00000594298 PDE1AP54750 535 aa20.85■□□□□ 0.93
SHKBP1-203ENST00000594298 CCSAPQ6IQ19 270 aaPredicted RBP20.85■□□□□ 0.93
SHKBP1-203ENST00000594298 CPXCR1Q8N123 301 aa20.85■□□□□ 0.93
SHKBP1-203ENST00000594298 CHST13Q8NET6 341 aa20.85■□□□□ 0.93
SHKBP1-203ENST00000594298 NEDD1Q8NHV4 660 aa20.85■□□□□ 0.93
SHKBP1-203ENST00000594298 NUP133Q8WUM0 1156 aa20.85■□□□□ 0.93
SHKBP1-203ENST00000594298 KIFC2Q96AC6 838 aa20.85■□□□□ 0.93
SHKBP1-203ENST00000594298 NACAP1Q9BZK3 213 aa20.85■□□□□ 0.93
SHKBP1-203ENST00000594298 RAVER2Q9HCJ3 691 aaKnown RBP20.85■□□□□ 0.93
SHKBP1-203ENST00000594298 FBXO40Q9UH90 709 aa20.85■□□□□ 0.93
SHKBP1-203ENST00000594298 CTDP1Q9Y5B0 961 aaPredicted RBP20.85■□□□□ 0.93
SHKBP1-203ENST00000594298 PQBP1O60828 265 aaKnown RBP20.84■□□□□ 0.93
SHKBP1-203ENST00000594298 FDX1P10109 184 aa20.84■□□□□ 0.93
SHKBP1-203ENST00000594298 CST5P28325 142 aaPredicted RBP20.84■□□□□ 0.93
SHKBP1-203ENST00000594298 SEMA6BQ9H3T3 888 aa20.84■□□□□ 0.93
SHKBP1-203ENST00000594298 STARD7Q9NQZ5 370 aa20.84■□□□□ 0.93
SHKBP1-203ENST00000594298 ZHX1Q9UKY1 873 aaPredicted RBP20.84■□□□□ 0.93
SHKBP1-203ENST00000594298 PLXNA1Q9UIW2 1896 aa20.84■□□□□ 0.93
SHKBP1-203ENST00000594298 RAG1P15918 1043 aa20.83■□□□□ 0.93
SHKBP1-203ENST00000594298 PDE4BQ07343 736 aa20.83■□□□□ 0.93
SHKBP1-203ENST00000594298 FAAP100Q0VG06 881 aa20.83■□□□□ 0.93
SHKBP1-203ENST00000594298 ACVR2BQ13705 512 aa20.83■□□□□ 0.93
SHKBP1-203ENST00000594298 PHF6Q8IWS0 365 aaKnown RBP eCLIP20.83■□□□□ 0.93
SHKBP1-203ENST00000594298 LRRC47Q8N1G4 583 aaKnown RBP20.83■□□□□ 0.93
SHKBP1-203ENST00000594298 ANKRD35Q8N283 1001 aa20.83■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms