RNA–Protein interactions for RNA: ENST00000590339.5

VPS25-205, Transcript of vacuolar protein sorting 25 homolog, humanhuman

TSL 2

Gene VPS25, Length 668 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25-205ENST00000590339 PRPF3O43395 683 aaKnown RBP10.87□□□□□ -0.67
VPS25-205ENST00000590339 NPM3O75607 178 aaKnown RBP10.87□□□□□ -0.67
VPS25-205ENST00000590339 PLEKHA8P1O95397 391 aa10.87□□□□□ -0.67
VPS25-205ENST00000590339 YEATS4O95619 227 aa10.87□□□□□ -0.67
VPS25-205ENST00000590339 MMP1P03956 469 aa10.87□□□□□ -0.67
VPS25-205ENST00000590339 XRCC6P12956 609 aaKnown RBP eCLIP10.87□□□□□ -0.67
VPS25-205ENST00000590339 GUCY1A2P33402 732 aa10.87□□□□□ -0.67
VPS25-205ENST00000590339 TFAP4Q01664 338 aa10.87□□□□□ -0.67
VPS25-205ENST00000590339 SNAPC2Q13487 334 aa10.87□□□□□ -0.67
VPS25-205ENST00000590339 GRM4Q14833 912 aa10.87□□□□□ -0.67
VPS25-205ENST00000590339 TAF1CQ15572 869 aaPredicted RBP10.87□□□□□ -0.67
VPS25-205ENST00000590339 SLC4A8Q2Y0W8 1093 aa10.87□□□□□ -0.67
VPS25-205ENST00000590339 NEDD1Q8NHV4 660 aa10.87□□□□□ -0.67
VPS25-205ENST00000590339 NUP133Q8WUM0 1156 aa10.87□□□□□ -0.67
VPS25-205ENST00000590339 SHISA4Q96DD7 197 aa10.87□□□□□ -0.67
VPS25-205ENST00000590339 FTOQ9C0B1 505 aaKnown RBP eCLIP10.87□□□□□ -0.67
VPS25-205ENST00000590339 ZNF112Q9UJU3 913 aa10.87□□□□□ -0.67
VPS25-205ENST00000590339 TRIM17Q9Y577 477 aa10.87□□□□□ -0.67
VPS25-205ENST00000590339 IGKV6D-41A0A0C4DH26 115 aa10.86□□□□□ -0.67
VPS25-205ENST00000590339 BTBD19C9JJ37 291 aa10.86□□□□□ -0.67
VPS25-205ENST00000590339 CETPP11597 493 aa10.86□□□□□ -0.67
VPS25-205ENST00000590339 LIG1P18858 919 aa10.86□□□□□ -0.67
VPS25-205ENST00000590339 PPATQ06203 517 aa10.86□□□□□ -0.67
VPS25-205ENST00000590339 PPIL2Q13356 520 aa10.86□□□□□ -0.67
VPS25-205ENST00000590339 PKN1Q16512 942 aa10.86□□□□□ -0.67
VPS25-205ENST00000590339 RBM43Q6ZSC3 357 aaKnown RBP10.86□□□□□ -0.67
VPS25-205ENST00000590339 LINC00301Q8NCQ3 95 aa10.86□□□□□ -0.67
VPS25-205ENST00000590339 CD99L2Q8TCZ2 262 aa10.86□□□□□ -0.67
VPS25-205ENST00000590339 FUCA2Q9BTY2 467 aa10.86□□□□□ -0.67
VPS25-205ENST00000590339 CFHR5Q9BXR6 569 aa10.86□□□□□ -0.67
VPS25-205ENST00000590339 OSBPL5Q9H0X9 879 aaPredicted RBP10.86□□□□□ -0.67
VPS25-205ENST00000590339 EHD4Q9H223 541 aa10.86□□□□□ -0.67
VPS25-205ENST00000590339 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.86□□□□□ -0.677e-9■■■■□ 23.2
VPS25-205ENST00000590339 MKNK2Q9HBH9 465 aa10.86□□□□□ -0.67
VPS25-205ENST00000590339 ZFYVE28Q9HCC9 887 aa10.86□□□□□ -0.67
VPS25-205ENST00000590339 PICK1Q9NRD5 415 aa10.86□□□□□ -0.67
VPS25-205ENST00000590339 DDX19AQ9NUU7 478 aaKnown RBP10.86□□□□□ -0.67
VPS25-205ENST00000590339 TAOK2Q9UL54 1235 aa10.86□□□□□ -0.67
VPS25-205ENST00000590339 ZHX2Q9Y6X8 837 aa10.86□□□□□ -0.67
VPS25-205ENST00000590339 MYH4Q9Y623 1939 aa10.86□□□□□ -0.67
VPS25-205ENST00000590339 PHF20L1A8MW92 1017 aa10.85□□□□□ -0.67
VPS25-205ENST00000590339 LETM1O95202 739 aaPredicted RBP10.85□□□□□ -0.67
VPS25-205ENST00000590339 TSPY3P0CV98 308 aa10.85□□□□□ -0.67
VPS25-205ENST00000590339 TSPY8P0CW00 308 aa10.85□□□□□ -0.67
VPS25-205ENST00000590339 SOX10P56693 466 aa10.85□□□□□ -0.67
VPS25-205ENST00000590339 SP3Q02447 781 aa10.85□□□□□ -0.67
VPS25-205ENST00000590339 TRIM29Q14134 588 aa10.85□□□□□ -0.67
VPS25-205ENST00000590339 PKN2Q16513 984 aaKnown RBP10.85□□□□□ -0.67
VPS25-205ENST00000590339 NOM1Q5C9Z4 860 aaKnown RBP10.85□□□□□ -0.67
VPS25-205ENST00000590339 CCDC84Q86UT8 332 aaPredicted RBP10.85□□□□□ -0.67
VPS25-205ENST00000590339 PNMA1Q8ND90 353 aa10.85□□□□□ -0.67
VPS25-205ENST00000590339 CTCFLQ8NI51 663 aaPredicted RBP10.85□□□□□ -0.67
VPS25-205ENST00000590339 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.85□□□□□ -0.67
VPS25-205ENST00000590339 KAT14Q9H8E8 782 aa10.85□□□□□ -0.67
VPS25-205ENST00000590339 SWAP70Q9UH65 585 aa10.85□□□□□ -0.67
VPS25-205ENST00000590339 ATRNL1Q5VV63 1379 aa10.85□□□□□ -0.67
VPS25-205ENST00000590339 A0A1W2PQ27 194 aa10.84□□□□□ -0.67
VPS25-205ENST00000590339 A0A1W2PQ64 194 aa10.84□□□□□ -0.67
VPS25-205ENST00000590339 A0A1W2PQD8 194 aa10.84□□□□□ -0.67
VPS25-205ENST00000590339 KIF5BP33176 963 aa10.84□□□□□ -0.67
VPS25-205ENST00000590339 ANO1Q5XXA6 986 aa10.84□□□□□ -0.67
VPS25-205ENST00000590339 SCYL3Q8IZE3 742 aa10.84□□□□□ -0.67
VPS25-205ENST00000590339 ZNF444Q8N0Y2 327 aaPredicted RBP10.84□□□□□ -0.67
VPS25-205ENST00000590339 CMTR1Q8N1G2 835 aaKnown RBP10.84□□□□□ -0.67
VPS25-205ENST00000590339 SRBD1Q8N5C6 995 aaKnown RBP10.84□□□□□ -0.67
VPS25-205ENST00000590339 KCNG4Q8TDN1 519 aa10.84□□□□□ -0.67
VPS25-205ENST00000590339 ERO1AQ96HE7 468 aa10.84□□□□□ -0.67
VPS25-205ENST00000590339 TMEM47Q9BQJ4 181 aa10.84□□□□□ -0.67
VPS25-205ENST00000590339 PHF20Q9BVI0 1012 aa10.84□□□□□ -0.67
VPS25-205ENST00000590339 FOXP1Q9H334 677 aaPredicted RBP10.84□□□□□ -0.67
VPS25-205ENST00000590339 CLSTN2Q9H4D0 955 aa10.84□□□□□ -0.67
VPS25-205ENST00000590339 FRMD4AQ9P2Q2 1039 aaPredicted RBP10.84□□□□□ -0.67
VPS25-205ENST00000590339 CLIC4Q9Y696 253 aa10.84□□□□□ -0.67
VPS25-205ENST00000590339 MORC2Q9Y6X9 1032 aaPredicted RBP10.84□□□□□ -0.67
VPS25-205ENST00000590339 PDHXO00330 501 aa10.83□□□□□ -0.68
VPS25-205ENST00000590339 CTNND1O60716 968 aaKnown RBP10.83□□□□□ -0.68
VPS25-205ENST00000590339 PTPRAP18433 802 aa10.83□□□□□ -0.68
VPS25-205ENST00000590339 SHMT1P34896 483 aa10.83□□□□□ -0.68
VPS25-205ENST00000590339 GNAQP50148 359 aa10.83□□□□□ -0.68
VPS25-205ENST00000590339 PTPAQ15257 358 aa10.83□□□□□ -0.68
VPS25-205ENST00000590339 NPY5RQ15761 445 aa10.83□□□□□ -0.68
VPS25-205ENST00000590339 SLC35G1Q2M3R5 365 aa10.83□□□□□ -0.68
VPS25-205ENST00000590339 NOL9Q5SY16 702 aaKnown RBP10.83□□□□□ -0.68
VPS25-205ENST00000590339 FBXO46Q6PJ61 603 aaPredicted RBP10.83□□□□□ -0.68
VPS25-205ENST00000590339 OTOP1Q7RTM1 612 aa10.83□□□□□ -0.68
VPS25-205ENST00000590339 NOSTRINQ8IVI9 506 aa10.83□□□□□ -0.68
VPS25-205ENST00000590339 DIS3L2Q8IYB7 885 aaKnown RBP10.83□□□□□ -0.68
VPS25-205ENST00000590339 ENGASEQ8NFI3 743 aa10.83□□□□□ -0.68
VPS25-205ENST00000590339 BICD2Q8TD16 824 aa10.83□□□□□ -0.68
VPS25-205ENST00000590339 PANK2Q9BZ23 570 aa10.83□□□□□ -0.68
VPS25-205ENST00000590339 RBSNQ9H1K0 784 aa10.83□□□□□ -0.68
VPS25-205ENST00000590339 NUP62CLQ9H1M0 184 aa10.83□□□□□ -0.68
VPS25-205ENST00000590339 TSPY26PQ9H489 355 aa10.83□□□□□ -0.68
VPS25-205ENST00000590339 GOLPH3LQ9H4A5 285 aa10.83□□□□□ -0.68
VPS25-205ENST00000590339 EFCC1Q9HA90 598 aa10.83□□□□□ -0.68
VPS25-205ENST00000590339 CPA4Q9UI42 421 aa10.83□□□□□ -0.68
VPS25-205ENST00000590339 MAD2L2Q9UI95 211 aa10.83□□□□□ -0.68
VPS25-205ENST00000590339 SERPINB13Q9UIV8 391 aa10.83□□□□□ -0.68
VPS25-205ENST00000590339 PALM3A6NDB9 673 aaPredicted RBP10.82□□□□□ -0.68
VPS25-205ENST00000590339 GOLGA6L4A6NEF3 574 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms