RNA–Protein interactions for RNA: ENST00000558988.5

SPG11-213, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 3

Gene SPG11, Length 620 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-213ENST00000558988 EAPPQ56P03 285 aaPredicted RBP9.51□□□□□ -0.89
SPG11-213ENST00000558988 HDGFL1Q5TGJ6 251 aa9.51□□□□□ -0.89
SPG11-213ENST00000558988 ZNF34Q8IZ26 560 aa9.51□□□□□ -0.89
SPG11-213ENST00000558988 RTKN2Q8IZC4 609 aa9.51□□□□□ -0.89
SPG11-213ENST00000558988 SYNE4Q8N205 404 aa9.51□□□□□ -0.89
SPG11-213ENST00000558988 RBM17Q96I25 401 aaKnown RBP9.51□□□□□ -0.89
SPG11-213ENST00000558988 UTP14AQ9BVJ6 771 aaKnown RBP9.51□□□□□ -0.89
SPG11-213ENST00000558988 RUSC1Q9BVN2 902 aa9.51□□□□□ -0.89
SPG11-213ENST00000558988 SEC31BQ9NQW1 1179 aa9.51□□□□□ -0.89
SPG11-213ENST00000558988 SH2B1Q9NRF2 756 aaPredicted RBP9.51□□□□□ -0.89
SPG11-213ENST00000558988 KLRG2A4D1S0 409 aaPredicted RBP9.5□□□□□ -0.89
SPG11-213ENST00000558988 ELL2O00472 640 aaPredicted RBP9.5□□□□□ -0.89
SPG11-213ENST00000558988 APAF1O14727 1248 aa9.5□□□□□ -0.89
SPG11-213ENST00000558988 LGR5O75473 907 aa9.5□□□□□ -0.89
SPG11-213ENST00000558988 HCLS1P14317 486 aaPredicted RBP9.5□□□□□ -0.89
SPG11-213ENST00000558988 IARSP41252 1262 aaKnown RBP9.5□□□□□ -0.89
SPG11-213ENST00000558988 NFKBIBQ15653 356 aa9.5□□□□□ -0.89
SPG11-213ENST00000558988 ZNF792Q3KQV3 632 aa9.5□□□□□ -0.89
SPG11-213ENST00000558988 COL13A1Q5TAT6 717 aaPredicted RBP9.5□□□□□ -0.89
SPG11-213ENST00000558988 KCNMB2Q9Y691 235 aa9.5□□□□□ -0.89
SPG11-213ENST00000558988 CHL1O00533 1208 aa9.49□□□□□ -0.89
SPG11-213ENST00000558988 ADMP35318 185 aa9.49□□□□□ -0.89
SPG11-213ENST00000558988 PLCL1Q15111 1095 aa9.49□□□□□ -0.89
SPG11-213ENST00000558988 CRY2Q49AN0 593 aa9.49□□□□□ -0.89
SPG11-213ENST00000558988 PARP10Q53GL7 1025 aa9.49□□□□□ -0.89
SPG11-213ENST00000558988 DUSP27Q5VZP5 1158 aa9.49□□□□□ -0.89
SPG11-213ENST00000558988 JDP2Q8WYK2 163 aa9.49□□□□□ -0.89
SPG11-213ENST00000558988 FAM168AQ92567 244 aa9.49□□□□□ -0.89
SPG11-213ENST00000558988 TMX4Q9H1E5 349 aaPredicted RBP9.49□□□□□ -0.89
SPG11-213ENST00000558988 DDX21Q9NR30 783 aaKnown RBP eCLIP9.49□□□□□ -0.89
SPG11-213ENST00000558988 BABAM1Q9NWV8 329 aa9.49□□□□□ -0.89
SPG11-213ENST00000558988 MKRN1Q9UHC7 482 aaKnown RBP9.49□□□□□ -0.89
SPG11-213ENST00000558988 TRMT112Q9UI30 125 aaKnown RBP9.49□□□□□ -0.89
SPG11-213ENST00000558988 RNF123Q5XPI4 1314 aa9.49□□□□□ -0.89
SPG11-213ENST00000558988 IQCA1LA6NCM1 817 aa9.48□□□□□ -0.89
SPG11-213ENST00000558988 SMNDC1O75940 238 aaKnown RBP eCLIP9.48□□□□□ -0.89
SPG11-213ENST00000558988 LRP10Q7Z4F1 713 aa9.48□□□□□ -0.89
SPG11-213ENST00000558988 DNAJC5GQ8N7S2 189 aa9.48□□□□□ -0.89
SPG11-213ENST00000558988 IBTKQ9P2D0 1353 aaPredicted RBP9.48□□□□□ -0.89
SPG11-213ENST00000558988 FAM95CA0A1B0GW59 222 aa9.47□□□□□ -0.89
SPG11-213ENST00000558988 PPIP5K2O43314 1243 aa9.47□□□□□ -0.89
SPG11-213ENST00000558988 EIF6P56537 245 aaKnown RBP9.47□□□□□ -0.89
SPG11-213ENST00000558988 NLRP12P59046 1061 aa9.47□□□□□ -0.89
SPG11-213ENST00000558988 TCIRG1Q13488 830 aa9.47□□□□□ -0.89
SPG11-213ENST00000558988 C11orf91Q3C1V1 193 aa9.47□□□□□ -0.89
SPG11-213ENST00000558988 HSP90AB3PQ58FF7 597 aa9.47□□□□□ -0.89
SPG11-213ENST00000558988 NLRP10Q86W26 655 aa9.47□□□□□ -0.89
SPG11-213ENST00000558988 NIM1KQ8IY84 436 aa9.47□□□□□ -0.89
SPG11-213ENST00000558988 TAF1DQ9H5J8 278 aaPredicted RBP9.47□□□□□ -0.89
SPG11-213ENST00000558988 ZC3H7BQ9UGR2 993 aaKnown RBP9.47□□□□□ -0.89
SPG11-213ENST00000558988 HACL1Q9UJ83 578 aa9.47□□□□□ -0.89
SPG11-213ENST00000558988 ABCC4O15439 1325 aa9.47□□□□□ -0.89
SPG11-213ENST00000558988 SH3TC1Q8TE82 1336 aa9.47□□□□□ -0.89
SPG11-213ENST00000558988 ANKRD36CQ5JPF3 1778 aa9.47□□□□□ -0.89
SPG11-213ENST00000558988 CFPP27918 469 aa9.46□□□□□ -0.9
SPG11-213ENST00000558988 EPHX2P34913 555 aa9.46□□□□□ -0.9
SPG11-213ENST00000558988 MESP2Q0VG99 397 aa9.46□□□□□ -0.9
SPG11-213ENST00000558988 AOC3Q16853 763 aa9.46□□□□□ -0.9
SPG11-213ENST00000558988 CCDC184Q52MB2 194 aa9.46□□□□□ -0.9
SPG11-213ENST00000558988 PAOXQ6QHF9 649 aa9.46□□□□□ -0.9
SPG11-213ENST00000558988 ZNF574Q6ZN55 896 aaPredicted RBP9.46□□□□□ -0.9
SPG11-213ENST00000558988 LCNL1Q6ZST4 164 aa9.46□□□□□ -0.9
SPG11-213ENST00000558988 DDX46Q7L014 1031 aaKnown RBP9.46□□□□□ -0.9
SPG11-213ENST00000558988 TMEM40Q8WWA1 233 aa9.46□□□□□ -0.9
SPG11-213ENST00000558988 CRAMP1Q96RY5 1269 aa9.46□□□□□ -0.9
SPG11-213ENST00000558988 RASSF4Q9H2L5 321 aa9.46□□□□□ -0.9
SPG11-213ENST00000558988 DBF4Q9UBU7 674 aaPredicted RBP9.46□□□□□ -0.9
SPG11-213ENST00000558988 COL4A5P29400 1685 aa9.45□□□□□ -0.9
SPG11-213ENST00000558988 LAMB2P55268 1798 aa9.45□□□□□ -0.9
SPG11-213ENST00000558988 FAM170BA6NMN3 283 aa9.45□□□□□ -0.9
SPG11-213ENST00000558988 LMOD1P29536 600 aaPredicted RBP9.45□□□□□ -0.9
SPG11-213ENST00000558988 MAP1SQ66K74 1059 aaPredicted RBP9.45□□□□□ -0.9
SPG11-213ENST00000558988 DPP8Q6V1X1 898 aaPredicted RBP9.45□□□□□ -0.9
SPG11-213ENST00000558988 LDHDQ86WU2 507 aa9.45□□□□□ -0.9
SPG11-213ENST00000558988 PLBD2Q8NHP8 589 aa9.45□□□□□ -0.9
SPG11-213ENST00000558988 FAM89AQ96GI7 184 aa9.45□□□□□ -0.9
SPG11-213ENST00000558988 TBC1D32Q96NH3 1257 aa9.45□□□□□ -0.9
SPG11-213ENST00000558988 PSMD1Q99460 953 aa9.45□□□□□ -0.9
SPG11-213ENST00000558988 HINFPQ9BQA5 517 aa9.45□□□□□ -0.9
SPG11-213ENST00000558988 RIC1Q4ADV7 1423 aa9.45□□□□□ -0.9
SPG11-213ENST00000558988 TAF1P21675 1872 aa9.45□□□□□ -0.9
SPG11-213ENST00000558988 FZD9O00144 591 aa9.44□□□□□ -0.9
SPG11-213ENST00000558988 HOXB7P09629 217 aa9.44□□□□□ -0.9
SPG11-213ENST00000558988 SEC13P55735 322 aa9.44□□□□□ -0.9
SPG11-213ENST00000558988 GNAI1P63096 354 aa9.44□□□□□ -0.9
SPG11-213ENST00000558988 CALD1Q05682 793 aaKnown RBP9.44□□□□□ -0.9
SPG11-213ENST00000558988 ZAR1Q86SH2 424 aa9.44□□□□□ -0.9
SPG11-213ENST00000558988 ATG4DQ86TL0 474 aaPredicted RBP9.44□□□□□ -0.9
SPG11-213ENST00000558988 GPC2Q8N158 579 aa9.44□□□□□ -0.9
SPG11-213ENST00000558988 JARID2Q92833 1246 aaPredicted RBP9.44□□□□□ -0.9
SPG11-213ENST00000558988 TSR2Q969E8 191 aaKnown RBP9.44□□□□□ -0.9
SPG11-213ENST00000558988 SPACA7Q96KW9 195 aa9.44□□□□□ -0.9
SPG11-213ENST00000558988 PHAXQ9H814 394 aaKnown RBP9.44□□□□□ -0.9
SPG11-213ENST00000558988 IFT57Q9NWB7 429 aa9.44□□□□□ -0.9
SPG11-213ENST00000558988 HYPKQ9NX55 129 aa9.44□□□□□ -0.9
SPG11-213ENST00000558988 ATP6V0A2Q9Y487 856 aa9.44□□□□□ -0.9
SPG11-213ENST00000558988 SCN4AP35499 1836 aa9.44□□□□□ -0.9
SPG11-213ENST00000558988 SNED1Q8TER0 1413 aa9.43□□□□□ -0.9
SPG11-213ENST00000558988 MEGF11A6BM72 1044 aa9.43□□□□□ -0.9
SPG11-213ENST00000558988 IGFBP4P22692 258 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 122.1 ms