RNA–Protein interactions for RNA: ENST00000462258.1

SF3A3-204, Transcript of splicing factor 3a subunit 3, humanhuman

TSL 2

Gene SF3A3, Length 527 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-204ENST00000462258 KIFC2Q96AC6 838 aa12.04□□□□□ -0.48
SF3A3-204ENST00000462258 PAWRQ96IZ0 340 aaKnown RBP12.04□□□□□ -0.48
SF3A3-204ENST00000462258 MMP19Q99542 508 aa12.04□□□□□ -0.48
SF3A3-204ENST00000462258 SLC5A4Q9NY91 659 aa12.04□□□□□ -0.48
SF3A3-204ENST00000462258 FEM1BQ9UK73 627 aa12.04□□□□□ -0.48
SF3A3-204ENST00000462258 OGDHLQ9ULD0 1010 aa12.04□□□□□ -0.48
SF3A3-204ENST00000462258 LRRC37A2A6NM11 1700 aa12.03□□□□□ -0.48
SF3A3-204ENST00000462258 COBLO75128 1261 aa12.03□□□□□ -0.48
SF3A3-204ENST00000462258 FGRP09769 529 aa12.03□□□□□ -0.48
SF3A3-204ENST00000462258 CYBAP13498 195 aa12.03□□□□□ -0.48
SF3A3-204ENST00000462258 GSPT1P15170 499 aaKnown RBP12.03□□□□□ -0.48
SF3A3-204ENST00000462258 SLC1A4P43007 532 aa12.03□□□□□ -0.48
SF3A3-204ENST00000462258 STAT2P52630 851 aa12.03□□□□□ -0.48
SF3A3-204ENST00000462258 KCTD2Q14681 263 aa12.03□□□□□ -0.48
SF3A3-204ENST00000462258 TTC22Q5TAA0 569 aa12.03□□□□□ -0.48
SF3A3-204ENST00000462258 RASGRP2Q7LDG7 609 aa12.03□□□□□ -0.48
SF3A3-204ENST00000462258 TBC1D10CQ8IV04 446 aa12.03□□□□□ -0.48
SF3A3-204ENST00000462258 DPF3Q92784 378 aa12.03□□□□□ -0.48
SF3A3-204ENST00000462258 GMCL1Q96IK5 515 aa12.03□□□□□ -0.48
SF3A3-204ENST00000462258 NBPF3Q9H094 633 aa12.03□□□□□ -0.48
SF3A3-204ENST00000462258 IL17RBQ9NRM6 502 aa12.03□□□□□ -0.48
SF3A3-204ENST00000462258 CTDP1Q9Y5B0 961 aaPredicted RBP12.03□□□□□ -0.48
SF3A3-204ENST00000462258 NEDD4P46934 1319 aa12.03□□□□□ -0.48
SF3A3-204ENST00000462258 H0YGN5 161 aa12.02□□□□□ -0.49
SF3A3-204ENST00000462258 ATP2A1O14983 1001 aa12.02□□□□□ -0.49
SF3A3-204ENST00000462258 ZBED4O75132 1171 aa12.02□□□□□ -0.49
SF3A3-204ENST00000462258 IGHA2P01877 340 aa12.02□□□□□ -0.49
SF3A3-204ENST00000462258 PCP11498 1178 aaKnown RBP12.02□□□□□ -0.49
SF3A3-204ENST00000462258 MNX1P50219 401 aaPredicted RBP12.02□□□□□ -0.49
SF3A3-204ENST00000462258 IKQ13123 557 aaPredicted RBP12.02□□□□□ -0.49
SF3A3-204ENST00000462258 LHX8Q68G74 356 aa12.02□□□□□ -0.49
SF3A3-204ENST00000462258 STAG1Q8WVM7 1258 aa12.02□□□□□ -0.49
SF3A3-204ENST00000462258 CHMP4CQ96CF2 233 aa12.02□□□□□ -0.49
SF3A3-204ENST00000462258 MAML3Q96JK9 1138 aa12.02□□□□□ -0.49
SF3A3-204ENST00000462258 RNF41Q9H4P4 317 aaPredicted RBP12.02□□□□□ -0.49
SF3A3-204ENST00000462258 C11orf49Q9H6J7 331 aa12.02□□□□□ -0.49
SF3A3-204ENST00000462258 SLC38A10Q9HBR0 1119 aa12.02□□□□□ -0.49
SF3A3-204ENST00000462258 DDX20Q9UHI6 824 aaKnown RBP12.02□□□□□ -0.49
SF3A3-204ENST00000462258 MCM3APO60318 1980 aa12.01□□□□□ -0.49
SF3A3-204ENST00000462258 TMEM232C9JQI7 657 aa12.01□□□□□ -0.49
SF3A3-204ENST00000462258 MSCO60682 206 aa12.01□□□□□ -0.49
SF3A3-204ENST00000462258 PGK2P07205 417 aa12.01□□□□□ -0.49
SF3A3-204ENST00000462258 MCCP23508 829 aa12.01□□□□□ -0.49
SF3A3-204ENST00000462258 CNGA1P29973 690 aa12.01□□□□□ -0.49
SF3A3-204ENST00000462258 NOVP48745 357 aa12.01□□□□□ -0.49
SF3A3-204ENST00000462258 OAZ1P54368 228 aa12.01□□□□□ -0.49
SF3A3-204ENST00000462258 CCDC96Q2M329 555 aa12.01□□□□□ -0.49
SF3A3-204ENST00000462258 AKNAD1Q5T1N1 836 aa12.01□□□□□ -0.49
SF3A3-204ENST00000462258 MFSD6Q6ZSS7 791 aa12.01□□□□□ -0.49
SF3A3-204ENST00000462258 FAM160B2Q86V87 743 aa12.01□□□□□ -0.49
SF3A3-204ENST00000462258 CPXCR1Q8N123 301 aa12.01□□□□□ -0.49
SF3A3-204ENST00000462258 TRPV1Q8NER1 839 aa12.01□□□□□ -0.49
SF3A3-204ENST00000462258 DSCC1Q9BVC3 393 aa12.01□□□□□ -0.49
SF3A3-204ENST00000462258 RAVER2Q9HCJ3 691 aaKnown RBP12.01□□□□□ -0.49
SF3A3-204ENST00000462258 MTMR7Q9Y216 660 aa12.01□□□□□ -0.49
SF3A3-204ENST00000462258 RAD50Q92878 1312 aa12.01□□□□□ -0.49
SF3A3-204ENST00000462258 LCTP09848 1927 aa12.01□□□□□ -0.49
SF3A3-204ENST00000462258 ZNF213O14771 459 aa12□□□□□ -0.49
SF3A3-204ENST00000462258 EVI5O60447 810 aa12□□□□□ -0.49
SF3A3-204ENST00000462258 SLC4A3P48751 1232 aa12□□□□□ -0.49
SF3A3-204ENST00000462258 KCTD1Q719H9 257 aa12□□□□□ -0.49
SF3A3-204ENST00000462258 DCAF4Q8WV16 495 aa12□□□□□ -0.49
SF3A3-204ENST00000462258 IL25Q9H293 177 aa12□□□□□ -0.49
SF3A3-204ENST00000462258 RNF216Q9NWF9 866 aaPredicted RBP12□□□□□ -0.49
SF3A3-204ENST00000462258 RIPK3Q9Y572 518 aa12□□□□□ -0.49
SF3A3-204ENST00000462258 NR2E3Q9Y5X4 410 aa12□□□□□ -0.49
SF3A3-204ENST00000462258 PFASO15067 1338 aa12□□□□□ -0.49
SF3A3-204ENST00000462258 SEPT4O43236 478 aa11.99□□□□□ -0.49
SF3A3-204ENST00000462258 FDX1P10109 184 aa11.99□□□□□ -0.49
SF3A3-204ENST00000462258 TOP1P11387 765 aaKnown RBP11.99□□□□□ -0.49
SF3A3-204ENST00000462258 ZNF792Q3KQV3 632 aa11.99□□□□□ -0.49
SF3A3-204ENST00000462258 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.99□□□□□ -0.49
SF3A3-204ENST00000462258 CHURC1Q8WUH1 139 aa11.99□□□□□ -0.49
SF3A3-204ENST00000462258 ESR2Q92731 530 aa11.99□□□□□ -0.49
SF3A3-204ENST00000462258 TMEM47Q9BQJ4 181 aa11.99□□□□□ -0.49
SF3A3-204ENST00000462258 HOMER2Q9NSB8 354 aa11.99□□□□□ -0.49
SF3A3-204ENST00000462258 TCP11L1Q9NUJ3 509 aa11.99□□□□□ -0.49
SF3A3-204ENST00000462258 FBXO40Q9UH90 709 aa11.99□□□□□ -0.49
SF3A3-204ENST00000462258 DIS3Q9Y2L1 958 aaKnown RBP11.99□□□□□ -0.49
SF3A3-204ENST00000462258 ZNF536O15090 1300 aa11.98□□□□□ -0.49
SF3A3-204ENST00000462258 PLA2G6O60733 806 aa11.98□□□□□ -0.49
SF3A3-204ENST00000462258 COL6A1P12109 1028 aa11.98□□□□□ -0.49
SF3A3-204ENST00000462258 NT5C2P49902 561 aa11.98□□□□□ -0.49
SF3A3-204ENST00000462258 IMMTQ16891 758 aaKnown RBP11.98□□□□□ -0.49
SF3A3-204ENST00000462258 RCSD1Q6JBY9 416 aa11.98□□□□□ -0.49
SF3A3-204ENST00000462258 CHRDL2Q6WN34 429 aa11.98□□□□□ -0.49
SF3A3-204ENST00000462258 C7orf61Q8IZ16 206 aa11.98□□□□□ -0.49
SF3A3-204ENST00000462258 ANKRD35Q8N283 1001 aa11.98□□□□□ -0.49
SF3A3-204ENST00000462258 CHST13Q8NET6 341 aa11.98□□□□□ -0.49
SF3A3-204ENST00000462258 DDX11Q96FC9 970 aa11.98□□□□□ -0.49
SF3A3-204ENST00000462258 TINF2Q9BSI4 451 aa11.98□□□□□ -0.49
SF3A3-204ENST00000462258 ACAD9Q9H845 621 aa11.98□□□□□ -0.49
SF3A3-204ENST00000462258 NRBP1Q9UHY1 535 aa11.98□□□□□ -0.49
SF3A3-204ENST00000462258 PRR12Q9ULL5 1215 aa11.98□□□□□ -0.49
SF3A3-204ENST00000462258 RANBP2P49792 3224 aaKnown RBP11.98□□□□□ -0.49
SF3A3-204ENST00000462258 MYH6P13533 1939 aa11.98□□□□□ -0.49
SF3A3-204ENST00000462258 FRMPD2Q68DX3 1309 aaPredicted RBP11.97□□□□□ -0.49
SF3A3-204ENST00000462258 SYNGAP1Q96PV0 1343 aa11.97□□□□□ -0.49
SF3A3-204ENST00000462258 DNAJC25-GNG10A0A024R161 153 aa11.97□□□□□ -0.49
SF3A3-204ENST00000462258 DNM1LO00429 736 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms