RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 MSCO60682 206 aa22.98■■□□□ 1.27
USP40-207ENST00000450940 BMP3P12645 472 aa22.98■■□□□ 1.27
USP40-207ENST00000450940 MFAP1P55081 439 aaKnown RBP22.98■■□□□ 1.27
USP40-207ENST00000450940 HABP4Q5JVS0 413 aaKnown RBP22.98■■□□□ 1.27
USP40-207ENST00000450940 MAML3Q96JK9 1138 aa22.98■■□□□ 1.27
USP40-207ENST00000450940 SLC38A10Q9HBR0 1119 aa22.98■■□□□ 1.27
USP40-207ENST00000450940 DIS3Q9Y2L1 958 aaKnown RBP22.98■■□□□ 1.27
USP40-207ENST00000450940 FDX1P10109 184 aa22.97■■□□□ 1.27
USP40-207ENST00000450940 COL6A1P12109 1028 aa22.97■■□□□ 1.27
USP40-207ENST00000450940 DHX30Q7L2E3 1194 aaKnown RBP eCLIP22.97■■□□□ 1.27
USP40-207ENST00000450940 MMP19Q99542 508 aa22.97■■□□□ 1.27
USP40-207ENST00000450940 C11orf49Q9H6J7 331 aa22.97■■□□□ 1.27
USP40-207ENST00000450940 DDX20Q9UHI6 824 aaKnown RBP22.97■■□□□ 1.27
USP40-207ENST00000450940 HIP1O00291 1037 aa22.96■■□□□ 1.27
USP40-207ENST00000450940 EVI5O60447 810 aa22.96■■□□□ 1.27
USP40-207ENST00000450940 RANBP6O60518 1105 aaKnown RBP22.96■■□□□ 1.27
USP40-207ENST00000450940 NMT2O60551 498 aa22.96■■□□□ 1.27
USP40-207ENST00000450940 PLA2G6O60733 806 aa22.96■■□□□ 1.27
USP40-207ENST00000450940 ZBED4O75132 1171 aa22.96■■□□□ 1.27
USP40-207ENST00000450940 OAZ1P54368 228 aa22.96■■□□□ 1.27
USP40-207ENST00000450940 KCTD2Q14681 263 aa22.96■■□□□ 1.27
USP40-207ENST00000450940 ZNF792Q3KQV3 632 aa22.96■■□□□ 1.27
USP40-207ENST00000450940 TCP11L1Q9NUJ3 509 aa22.96■■□□□ 1.27
USP40-207ENST00000450940 COLQQ9Y215 455 aaPredicted RBP22.96■■□□□ 1.27
USP40-207ENST00000450940 RIPK3Q9Y572 518 aa22.96■■□□□ 1.27
USP40-207ENST00000450940 PCP11498 1178 aaKnown RBP22.95■■□□□ 1.26
USP40-207ENST00000450940 PDE4AP27815 886 aa22.95■■□□□ 1.26
USP40-207ENST00000450940 SNRNP48Q6IEG0 339 aaKnown RBP22.95■■□□□ 1.26
USP40-207ENST00000450940 KIFC2Q96AC6 838 aa22.95■■□□□ 1.26
USP40-207ENST00000450940 STX8Q9UNK0 236 aa22.95■■□□□ 1.26
USP40-207ENST00000450940 LAMA4Q16363 1823 aa22.94■■□□□ 1.26
USP40-207ENST00000450940 PFASO15067 1338 aa22.94■■□□□ 1.26
USP40-207ENST00000450940 TMEM232C9JQI7 657 aa22.94■■□□□ 1.26
USP40-207ENST00000450940 RCSD1Q6JBY9 416 aa22.94■■□□□ 1.26
USP40-207ENST00000450940 FAM160B2Q86V87 743 aa22.94■■□□□ 1.26
USP40-207ENST00000450940 CHURC1Q8WUH1 139 aa22.94■■□□□ 1.26
USP40-207ENST00000450940 STAG1Q8WVM7 1258 aa22.94■■□□□ 1.26
USP40-207ENST00000450940 NRBP1Q9UHY1 535 aa22.94■■□□□ 1.26
USP40-207ENST00000450940 SMCHD1A6NHR9 2005 aa22.94■■□□□ 1.26
USP40-207ENST00000450940 SEPT4O43236 478 aa22.93■■□□□ 1.26
USP40-207ENST00000450940 PGK2P07205 417 aa22.93■■□□□ 1.26
USP40-207ENST00000450940 MCCP23508 829 aa22.93■■□□□ 1.26
USP40-207ENST00000450940 CNGA1P29973 690 aa22.93■■□□□ 1.26
USP40-207ENST00000450940 SLC1A4P43007 532 aa22.93■■□□□ 1.26
USP40-207ENST00000450940 STAT2P52630 851 aa22.93■■□□□ 1.26
USP40-207ENST00000450940 AKNAD1Q5T1N1 836 aa22.93■■□□□ 1.26
USP40-207ENST00000450940 CWC27Q6UX04 472 aaKnown RBP22.93■■□□□ 1.26
USP40-207ENST00000450940 DIAPH3Q9NSV4 1193 aa22.93■■□□□ 1.26
USP40-207ENST00000450940 DNAJC25-GNG10A0A024R161 153 aa22.92■■□□□ 1.26
USP40-207ENST00000450940 IRX6P78412 446 aaPredicted RBP22.92■■□□□ 1.26
USP40-207ENST00000450940 CPXCR1Q8N123 301 aa22.92■■□□□ 1.26
USP40-207ENST00000450940 TINF2Q9BSI4 451 aa22.92■■□□□ 1.26
USP40-207ENST00000450940 PRO3102Q9H379 93 aa22.92■■□□□ 1.26
USP40-207ENST00000450940 RAVER2Q9HCJ3 691 aaKnown RBP22.92■■□□□ 1.26
USP40-207ENST00000450940 NT5C2P49902 561 aa22.91■■□□□ 1.26
USP40-207ENST00000450940 HAND2P61296 217 aa22.91■■□□□ 1.26
USP40-207ENST00000450940 MFSD6Q6ZSS7 791 aa22.91■■□□□ 1.26
USP40-207ENST00000450940 MSL3Q8N5Y2 521 aaKnown RBP22.91■■□□□ 1.26
USP40-207ENST00000450940 FBXO40Q9UH90 709 aa22.91■■□□□ 1.26
USP40-207ENST00000450940 CTDP1Q9Y5B0 961 aaPredicted RBP22.91■■□□□ 1.26
USP40-207ENST00000450940 TOP1P11387 765 aaKnown RBP22.9■■□□□ 1.26
USP40-207ENST00000450940 PRAMEF19Q5SWL8 479 aa22.9■■□□□ 1.26
USP40-207ENST00000450940 TTC22Q5TAA0 569 aa22.9■■□□□ 1.26
USP40-207ENST00000450940 TBC1D10CQ8IV04 446 aa22.9■■□□□ 1.26
USP40-207ENST00000450940 CHST13Q8NET6 341 aa22.9■■□□□ 1.26
USP40-207ENST00000450940 TTC14Q96N46 770 aa22.9■■□□□ 1.26
USP40-207ENST00000450940 DSCC1Q9BVC3 393 aa22.9■■□□□ 1.26
USP40-207ENST00000450940 RNF41Q9H4P4 317 aaPredicted RBP22.9■■□□□ 1.26
USP40-207ENST00000450940 TOMM22Q9NS69 142 aa22.9■■□□□ 1.26
USP40-207ENST00000450940 ZNF536O15090 1300 aa22.89■■□□□ 1.26
USP40-207ENST00000450940 TRIOBPQ9H2D6 2365 aa22.89■■□□□ 1.26
USP40-207ENST00000450940 DNM1LO00429 736 aa22.89■■□□□ 1.25
USP40-207ENST00000450940 ZNF213O14771 459 aa22.89■■□□□ 1.25
USP40-207ENST00000450940 GSPT1P15170 499 aaKnown RBP22.89■■□□□ 1.25
USP40-207ENST00000450940 RRP12Q5JTH9 1297 aaKnown RBP22.89■■□□□ 1.25
USP40-207ENST00000450940 CHRDL2Q6WN34 429 aa22.89■■□□□ 1.25
USP40-207ENST00000450940 DCAF4Q8WV16 495 aa22.89■■□□□ 1.25
USP40-207ENST00000450940 TMEM47Q9BQJ4 181 aa22.89■■□□□ 1.25
USP40-207ENST00000450940 DNAH12Q6ZR08 3092 aa22.89■■□□□ 1.25
USP40-207ENST00000450940 MAMDC4Q6UXC1 1216 aa22.88■■□□□ 1.25
USP40-207ENST00000450940 BTNL9Q6UXG8 535 aa22.88■■□□□ 1.25
USP40-207ENST00000450940 KCTD1Q719H9 257 aa22.88■■□□□ 1.25
USP40-207ENST00000450940 ZNF467Q7Z7K2 595 aaPredicted RBP22.88■■□□□ 1.25
USP40-207ENST00000450940 ARRDC4Q8NCT1 418 aa22.88■■□□□ 1.25
USP40-207ENST00000450940 DDX11Q96FC9 970 aa22.88■■□□□ 1.25
USP40-207ENST00000450940 SYNGAP1Q96PV0 1343 aa22.87■■□□□ 1.25
USP40-207ENST00000450940 PRR12Q9ULL5 1215 aa22.87■■□□□ 1.25
USP40-207ENST00000450940 RANBP2P49792 3224 aaKnown RBP22.86■■□□□ 1.25
USP40-207ENST00000450940 ZNF865P0CJ78 1059 aaPredicted RBP22.86■■□□□ 1.25
USP40-207ENST00000450940 LRRC26Q2I0M4 334 aa22.86■■□□□ 1.25
USP40-207ENST00000450940 TKFCQ3LXA3 575 aa22.86■■□□□ 1.25
USP40-207ENST00000450940 RASGRP2Q7LDG7 609 aa22.86■■□□□ 1.25
USP40-207ENST00000450940 C7orf61Q8IZ16 206 aa22.86■■□□□ 1.25
USP40-207ENST00000450940 ESR2Q92731 530 aa22.86■■□□□ 1.25
USP40-207ENST00000450940 RBM27Q9P2N5 1060 aaKnown RBP22.86■■□□□ 1.25
USP40-207ENST00000450940 NEDD4P46934 1319 aa22.85■■□□□ 1.25
USP40-207ENST00000450940 MCM3APO60318 1980 aa22.85■■□□□ 1.25
USP40-207ENST00000450940 SNAI1O95863 264 aaPredicted RBP22.85■■□□□ 1.25
USP40-207ENST00000450940 TAL1P17542 331 aaPredicted RBP22.85■■□□□ 1.25
USP40-207ENST00000450940 SLC4A3P48751 1232 aa22.85■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms