RNA–Protein interactions for RNA: ENST00000409588.1

NIF3L1-205, Transcript of NGG1 interacting factor 3 like 1, humanhuman

TSL 1 (best) BASIC

Gene NIF3L1, Length 1,269 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIF3L1-205ENST00000409588 RILPL2Q969X0 211 aa17.23■□□□□ 0.35
NIF3L1-205ENST00000409588 TEX13BQ9BXU2 312 aa17.23■□□□□ 0.35
NIF3L1-205ENST00000409588 CTDP1Q9Y5B0 961 aaPredicted RBP17.23■□□□□ 0.35
NIF3L1-205ENST00000409588 RLFQ13129 1914 aa17.22■□□□□ 0.35
NIF3L1-205ENST00000409588 GREB1LQ9C091 1923 aaPredicted RBP17.22■□□□□ 0.35
NIF3L1-205ENST00000409588 TSPY2A6NKD2 308 aa17.22■□□□□ 0.35
NIF3L1-205ENST00000409588 H0YGN5 161 aa17.22■□□□□ 0.35
NIF3L1-205ENST00000409588 PLA2G6O60733 806 aa17.22■□□□□ 0.35
NIF3L1-205ENST00000409588 FGAP02671 866 aa17.22■□□□□ 0.35
NIF3L1-205ENST00000409588 MSL3Q8N5Y2 521 aaKnown RBP17.22■□□□□ 0.35
NIF3L1-205ENST00000409588 NPLOC4Q8TAT6 608 aa17.22■□□□□ 0.35
NIF3L1-205ENST00000409588 GMCL1Q96IK5 515 aa17.22■□□□□ 0.35
NIF3L1-205ENST00000409588 C11orf49Q9H6J7 331 aa17.22■□□□□ 0.35
NIF3L1-205ENST00000409588 FBXO28Q9NVF7 368 aa17.22■□□□□ 0.35
NIF3L1-205ENST00000409588 ZNF214Q9UL59 606 aaPredicted RBP17.22■□□□□ 0.35
NIF3L1-205ENST00000409588 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.22■□□□□ 0.35
NIF3L1-205ENST00000409588 FOXP2O15409 715 aa17.21■□□□□ 0.35
NIF3L1-205ENST00000409588 HSPD1P10809 573 aaKnown RBP17.21■□□□□ 0.35
NIF3L1-205ENST00000409588 BMP3P12645 472 aa17.21■□□□□ 0.35
NIF3L1-205ENST00000409588 SDSP20132 328 aa17.21■□□□□ 0.35
NIF3L1-205ENST00000409588 HABP4Q5JVS0 413 aaKnown RBP17.21■□□□□ 0.35
NIF3L1-205ENST00000409588 SLFN13Q68D06 897 aa17.21■□□□□ 0.35
NIF3L1-205ENST00000409588 CCDC129Q6ZRS4 1044 aa17.21■□□□□ 0.35
NIF3L1-205ENST00000409588 FAM160B2Q86V87 743 aa17.21■□□□□ 0.35
NIF3L1-205ENST00000409588 REPS2Q8NFH8 660 aa17.21■□□□□ 0.35
NIF3L1-205ENST00000409588 MMP19Q99542 508 aa17.21■□□□□ 0.35
NIF3L1-205ENST00000409588 TCP11L1Q9NUJ3 509 aa17.21■□□□□ 0.35
NIF3L1-205ENST00000409588 FLRT1Q9NZU1 646 aa17.21■□□□□ 0.35
NIF3L1-205ENST00000409588 FBXO40Q9UH90 709 aa17.21■□□□□ 0.35
NIF3L1-205ENST00000409588 DDX20Q9UHI6 824 aaKnown RBP17.21■□□□□ 0.35
NIF3L1-205ENST00000409588 COBLO75128 1261 aa17.2■□□□□ 0.34
NIF3L1-205ENST00000409588 CCND3P30281 292 aaPredicted RBP17.2■□□□□ 0.34
NIF3L1-205ENST00000409588 NOVP48745 357 aa17.2■□□□□ 0.34
NIF3L1-205ENST00000409588 FAM47AQ5JRC9 791 aa17.2■□□□□ 0.34
NIF3L1-205ENST00000409588 RCSD1Q6JBY9 416 aa17.2■□□□□ 0.34
NIF3L1-205ENST00000409588 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.2■□□□□ 0.34
NIF3L1-205ENST00000409588 ARRDC4Q8NCT1 418 aa17.2■□□□□ 0.34
NIF3L1-205ENST00000409588 FAM227BQ96M60 508 aa17.2■□□□□ 0.34
NIF3L1-205ENST00000409588 TTC14Q96N46 770 aa17.2■□□□□ 0.34
NIF3L1-205ENST00000409588 RNF41Q9H4P4 317 aaPredicted RBP17.2■□□□□ 0.34
NIF3L1-205ENST00000409588 SLC38A10Q9HBR0 1119 aa17.2■□□□□ 0.34
NIF3L1-205ENST00000409588 A0A0G2JMZ2 1700 aa17.2■□□□□ 0.34
NIF3L1-205ENST00000409588 CCDC171Q6TFL3 1326 aa17.2■□□□□ 0.34
NIF3L1-205ENST00000409588 ZNF236Q9UL36 1845 aa17.19■□□□□ 0.34
NIF3L1-205ENST00000409588 A0A0D9SFI3 127 aa17.19■□□□□ 0.34
NIF3L1-205ENST00000409588 RANBP6O60518 1105 aaKnown RBP17.19■□□□□ 0.34
NIF3L1-205ENST00000409588 CYBAP13498 195 aa17.19■□□□□ 0.34
NIF3L1-205ENST00000409588 CNGA1P29973 690 aa17.19■□□□□ 0.34
NIF3L1-205ENST00000409588 CYP2C19P33261 490 aa17.19■□□□□ 0.34
NIF3L1-205ENST00000409588 SLC1A4P43007 532 aa17.19■□□□□ 0.34
NIF3L1-205ENST00000409588 CTDSPL2Q05D32 466 aa17.19■□□□□ 0.34
NIF3L1-205ENST00000409588 NMIQ13287 307 aaPredicted RBP17.19■□□□□ 0.34
NIF3L1-205ENST00000409588 VPS53Q5VIR6 699 aa17.19■□□□□ 0.34
NIF3L1-205ENST00000409588 CHST13Q8NET6 341 aa17.19■□□□□ 0.34
NIF3L1-205ENST00000409588 STAG1Q8WVM7 1258 aa17.19■□□□□ 0.34
NIF3L1-205ENST00000409588 MAML3Q96JK9 1138 aa17.19■□□□□ 0.34
NIF3L1-205ENST00000409588 STX8Q9UNK0 236 aa17.19■□□□□ 0.34
NIF3L1-205ENST00000409588 SEPT4O43236 478 aa17.18■□□□□ 0.34
NIF3L1-205ENST00000409588 COL6A1P12109 1028 aa17.18■□□□□ 0.34
NIF3L1-205ENST00000409588 STAT2P52630 851 aa17.18■□□□□ 0.34
NIF3L1-205ENST00000409588 ZNF792Q3KQV3 632 aa17.18■□□□□ 0.34
NIF3L1-205ENST00000409588 SNRNP48Q6IEG0 339 aaKnown RBP17.18■□□□□ 0.34
NIF3L1-205ENST00000409588 MFSD6Q6ZSS7 791 aa17.18■□□□□ 0.34
NIF3L1-205ENST00000409588 NUP88Q99567 741 aaPredicted RBP17.18■□□□□ 0.34
NIF3L1-205ENST00000409588 IL17RBQ9NRM6 502 aa17.18■□□□□ 0.34
NIF3L1-205ENST00000409588 A0A1W2PPC1 479 aa17.17■□□□□ 0.34
NIF3L1-205ENST00000409588 CCDC178Q5BJE1 867 aa17.17■□□□□ 0.34
NIF3L1-205ENST00000409588 ZNF467Q7Z7K2 595 aaPredicted RBP17.17■□□□□ 0.34
NIF3L1-205ENST00000409588 KIFC2Q96AC6 838 aa17.17■□□□□ 0.34
NIF3L1-205ENST00000409588 DDX11Q96FC9 970 aa17.17■□□□□ 0.34
NIF3L1-205ENST00000409588 TINF2Q9BSI4 451 aa17.17■□□□□ 0.34
NIF3L1-205ENST00000409588 DIAPH3Q9NSV4 1193 aa17.17■□□□□ 0.34
NIF3L1-205ENST00000409588 CTNNA3Q9UI47 895 aa17.17■□□□□ 0.34
NIF3L1-205ENST00000409588 PNMA2Q9UL42 364 aa17.17■□□□□ 0.34
NIF3L1-205ENST00000409588 COLQQ9Y215 455 aaPredicted RBP17.17■□□□□ 0.34
NIF3L1-205ENST00000409588 TMEM232C9JQI7 657 aa17.16■□□□□ 0.34
NIF3L1-205ENST00000409588 DNM1LO00429 736 aa17.16■□□□□ 0.34
NIF3L1-205ENST00000409588 ZNF213O14771 459 aa17.16■□□□□ 0.34
NIF3L1-205ENST00000409588 TKFCQ3LXA3 575 aa17.16■□□□□ 0.34
NIF3L1-205ENST00000409588 AKNAD1Q5T1N1 836 aa17.16■□□□□ 0.34
NIF3L1-205ENST00000409588 LRRC47Q8N1G4 583 aaKnown RBP17.16■□□□□ 0.34
NIF3L1-205ENST00000409588 DIS3LQ8TF46 1054 aaKnown RBP17.16■□□□□ 0.34
NIF3L1-205ENST00000409588 PARP14Q460N5 1801 aa17.15■□□□□ 0.34
NIF3L1-205ENST00000409588 TOP1P11387 765 aaKnown RBP17.15■□□□□ 0.34
NIF3L1-205ENST00000409588 MCCP23508 829 aa17.15■□□□□ 0.34
NIF3L1-205ENST00000409588 MAMDC4Q6UXC1 1216 aa17.15■□□□□ 0.34
NIF3L1-205ENST00000409588 ZNF589Q86UQ0 364 aaPredicted RBP17.15■□□□□ 0.34
NIF3L1-205ENST00000409588 CPXCR1Q8N123 301 aa17.15■□□□□ 0.34
NIF3L1-205ENST00000409588 DCAF4Q8WV16 495 aa17.15■□□□□ 0.34
NIF3L1-205ENST00000409588 DSCC1Q9BVC3 393 aa17.15■□□□□ 0.34
NIF3L1-205ENST00000409588 TOMM22Q9NS69 142 aa17.15■□□□□ 0.34
NIF3L1-205ENST00000409588 CNPY2Q9Y2B0 182 aa17.15■□□□□ 0.34
NIF3L1-205ENST00000409588 DNAJC25-GNG10A0A024R161 153 aa17.14■□□□□ 0.33
NIF3L1-205ENST00000409588 IKQ13123 557 aaPredicted RBP17.14■□□□□ 0.33
NIF3L1-205ENST00000409588 CWC27Q6UX04 472 aaKnown RBP17.14■□□□□ 0.33
NIF3L1-205ENST00000409588 ANKRD35Q8N283 1001 aa17.14■□□□□ 0.33
NIF3L1-205ENST00000409588 TRPV1Q8NER1 839 aa17.14■□□□□ 0.33
NIF3L1-205ENST00000409588 ESR2Q92731 530 aa17.14■□□□□ 0.33
NIF3L1-205ENST00000409588 MS4A3Q96HJ5 214 aa17.14■□□□□ 0.33
NIF3L1-205ENST00000409588 PCDH10Q9P2E7 1040 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms