RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 WWC2Q6AWC2 1192 aa20.83■□□□□ 0.93
CCDC88C-203ENST00000389856 HOMER1Q86YM7 354 aa20.83■□□□□ 0.93
CCDC88C-203ENST00000389856 BLIDQ8IZY5 108 aa20.83■□□□□ 0.93
CCDC88C-203ENST00000389856 ADARB2Q9NS39 739 aaKnown RBP20.83■□□□□ 0.93
CCDC88C-203ENST00000389856 PITPNM2Q9BZ72 1349 aa20.83■□□□□ 0.93
CCDC88C-203ENST00000389856 BAZ2BQ9UIF8 2168 aaKnown RBP20.83■□□□□ 0.92
CCDC88C-203ENST00000389856 PNMA6FA0A0J9YX94 578 aa20.82■□□□□ 0.92
CCDC88C-203ENST00000389856 ESYT2A0FGR8 921 aa20.82■□□□□ 0.92
CCDC88C-203ENST00000389856 STXBP3O00186 592 aa20.82■□□□□ 0.92
CCDC88C-203ENST00000389856 GRIN3BO60391 1043 aa20.82■□□□□ 0.92
CCDC88C-203ENST00000389856 CAVIN2O95810 425 aa20.82■□□□□ 0.92
CCDC88C-203ENST00000389856 EGFRP00533 1210 aa20.82■□□□□ 0.92
CCDC88C-203ENST00000389856 SLURP2P0DP57 97 aa20.82■□□□□ 0.92
CCDC88C-203ENST00000389856 YBX3P16989 372 aaKnown RBP eCLIP20.82■□□□□ 0.92
CCDC88C-203ENST00000389856 C9orf131Q5VYM1 1079 aa20.82■□□□□ 0.92
CCDC88C-203ENST00000389856 ADALQ6DHV7 355 aa20.82■□□□□ 0.92
CCDC88C-203ENST00000389856 RBM43Q6ZSC3 357 aaKnown RBP20.82■□□□□ 0.92
CCDC88C-203ENST00000389856 MIGA2Q7L4E1 593 aa20.82■□□□□ 0.92
CCDC88C-203ENST00000389856 TEPSINQ96N21 525 aa20.82■□□□□ 0.92
CCDC88C-203ENST00000389856 ZNF341Q9BYN7 854 aa20.82■□□□□ 0.92
CCDC88C-203ENST00000389856 GLT8D2Q9H1C3 349 aa20.82■□□□□ 0.92
CCDC88C-203ENST00000389856 VAT1LQ9HCJ6 419 aa20.82■□□□□ 0.92
CCDC88C-203ENST00000389856 TMX2Q9Y320 296 aa20.82■□□□□ 0.92
CCDC88C-203ENST00000389856 CLIC4Q9Y696 253 aa20.82■□□□□ 0.92
CCDC88C-203ENST00000389856 NR5A1Q13285 461 aa20.82■□□□□ 0.92
CCDC88C-203ENST00000389856 ANGEL2Q5VTE6 544 aaKnown RBP20.82■□□□□ 0.92
CCDC88C-203ENST00000389856 GPKOWQ92917 476 aaPredicted RBP eCLIP20.82■□□□□ 0.92
CCDC88C-203ENST00000389856 PIGSQ96S52 555 aa20.82■□□□□ 0.92
CCDC88C-203ENST00000389856 UBA5Q9GZZ9 404 aa20.82■□□□□ 0.92
CCDC88C-203ENST00000389856 EIF4ENIF1Q9NRA8 985 aaKnown RBP20.82■□□□□ 0.92
CCDC88C-203ENST00000389856 MORC2Q9Y6X9 1032 aaPredicted RBP20.82■□□□□ 0.92
CCDC88C-203ENST00000389856 TRIM75PA6NK02 468 aa20.81■□□□□ 0.92
CCDC88C-203ENST00000389856 ZNF500O60304 480 aaPredicted RBP20.81■□□□□ 0.92
CCDC88C-203ENST00000389856 CTNND1O60716 968 aaKnown RBP20.81■□□□□ 0.92
CCDC88C-203ENST00000389856 NDUFB10O96000 172 aa20.81■□□□□ 0.92
CCDC88C-203ENST00000389856 BMP3P12645 472 aa20.81■□□□□ 0.92
CCDC88C-203ENST00000389856 ADGRF4Q8IZF3 695 aa20.81■□□□□ 0.92
CCDC88C-203ENST00000389856 PGBD1Q96JS3 809 aa20.81■□□□□ 0.92
CCDC88C-203ENST00000389856 ATAD5Q96QE3 1844 aa20.81■□□□□ 0.92
CCDC88C-203ENST00000389856 FTOQ9C0B1 505 aaKnown RBP eCLIP20.81■□□□□ 0.92
CCDC88C-203ENST00000389856 ZMYND12Q9H0C1 365 aa20.81■□□□□ 0.92
CCDC88C-203ENST00000389856 CLSTN2Q9H4D0 955 aa20.81■□□□□ 0.92
CCDC88C-203ENST00000389856 ZKSCAN5Q9Y2L8 839 aa20.81■□□□□ 0.92
CCDC88C-203ENST00000389856 CCDC194A0A1B0GVG4 234 aa20.8■□□□□ 0.92
CCDC88C-203ENST00000389856 ZBTB5O15062 677 aa20.8■□□□□ 0.92
CCDC88C-203ENST00000389856 CTAGE5O15320 804 aa20.8■□□□□ 0.92
CCDC88C-203ENST00000389856 GPR162Q16538 588 aa20.8■□□□□ 0.92
CCDC88C-203ENST00000389856 SUPT20HL1Q3ZLR7 823 aa20.8■□□□□ 0.92
CCDC88C-203ENST00000389856 KCTD1Q719H9 257 aa20.8■□□□□ 0.92
CCDC88C-203ENST00000389856 SIAH1Q8IUQ4 282 aa20.8■□□□□ 0.92
CCDC88C-203ENST00000389856 OXER1Q8TDS5 423 aa20.8■□□□□ 0.92
CCDC88C-203ENST00000389856 MRPS27Q92552 414 aaKnown RBP20.8■□□□□ 0.92
CCDC88C-203ENST00000389856 IKQ13123 557 aaPredicted RBP20.79■□□□□ 0.92
CCDC88C-203ENST00000389856 RRP1BQ14684 758 aaKnown RBP20.79■□□□□ 0.92
CCDC88C-203ENST00000389856 SLC35G1Q2M3R5 365 aa20.79■□□□□ 0.92
CCDC88C-203ENST00000389856 TPRNQ4KMQ1 711 aa20.79■□□□□ 0.92
CCDC88C-203ENST00000389856 CCAR1Q8IX12 1150 aaKnown RBP20.79■□□□□ 0.92
CCDC88C-203ENST00000389856 TRPM4Q8TD43 1214 aa20.79■□□□□ 0.92
CCDC88C-203ENST00000389856 TNFRSF25Q93038 417 aa20.79■□□□□ 0.92
CCDC88C-203ENST00000389856 TNMDQ9H2S6 317 aa20.79■□□□□ 0.92
CCDC88C-203ENST00000389856 JMJD4Q9H9V9 463 aa20.79■□□□□ 0.92
CCDC88C-203ENST00000389856 GGA3Q9NZ52 723 aa20.79■□□□□ 0.92
CCDC88C-203ENST00000389856 PCDHA7Q9UN72 937 aa20.79■□□□□ 0.92
CCDC88C-203ENST00000389856 EPS15P42566 896 aa20.78■□□□□ 0.92
CCDC88C-203ENST00000389856 RASGRP2Q7LDG7 609 aa20.78■□□□□ 0.92
CCDC88C-203ENST00000389856 KRT25Q7Z3Z0 450 aa20.78■□□□□ 0.92
CCDC88C-203ENST00000389856 SMCO2A6NFE2 343 aa20.78■□□□□ 0.92
CCDC88C-203ENST00000389856 PHF20L1A8MW92 1017 aa20.78■□□□□ 0.92
CCDC88C-203ENST00000389856 CUTAO60888 179 aa20.78■□□□□ 0.92
CCDC88C-203ENST00000389856 DDNO94850 711 aaPredicted RBP20.78■□□□□ 0.92
CCDC88C-203ENST00000389856 LIG1P18858 919 aa20.78■□□□□ 0.92
CCDC88C-203ENST00000389856 PTPAQ15257 358 aa20.78■□□□□ 0.92
CCDC88C-203ENST00000389856 NPY5RQ15761 445 aa20.78■□□□□ 0.92
CCDC88C-203ENST00000389856 SHROOM1Q2M3G4 852 aaPredicted RBP20.78■□□□□ 0.92
CCDC88C-203ENST00000389856 SHISA4Q96DD7 197 aa20.78■□□□□ 0.92
CCDC88C-203ENST00000389856 MTMR8Q96EF0 704 aa20.78■□□□□ 0.92
CCDC88C-203ENST00000389856 CPVLQ9H3G5 476 aa20.78■□□□□ 0.92
CCDC88C-203ENST00000389856 VCPKMTQ9H867 229 aa20.78■□□□□ 0.92
CCDC88C-203ENST00000389856 ADCY7P51828 1080 aa20.77■□□□□ 0.92
CCDC88C-203ENST00000389856 JAG1P78504 1218 aa20.77■□□□□ 0.92
CCDC88C-203ENST00000389856 FAM160A1Q05DH4 1040 aa20.77■□□□□ 0.92
CCDC88C-203ENST00000389856 BTNL9Q6UXG8 535 aa20.77■□□□□ 0.92
CCDC88C-203ENST00000389856 TEX2Q8IWB9 1127 aa20.77■□□□□ 0.92
CCDC88C-203ENST00000389856 CDAN1Q8IWY9 1227 aa20.77■□□□□ 0.92
CCDC88C-203ENST00000389856 KRI1Q8N9T8 703 aaKnown RBP20.77■□□□□ 0.92
CCDC88C-203ENST00000389856 FSIP1Q8NA03 581 aa20.77■□□□□ 0.92
CCDC88C-203ENST00000389856 FAM200AQ8TCP9 573 aa20.77■□□□□ 0.92
CCDC88C-203ENST00000389856 CHURC1Q8WUH1 139 aa20.77■□□□□ 0.92
CCDC88C-203ENST00000389856 FEZ1Q99689 392 aa20.77■□□□□ 0.92
CCDC88C-203ENST00000389856 DACT1Q9NYF0 836 aa20.77■□□□□ 0.92
CCDC88C-203ENST00000389856 ASTN2O75129 1339 aaPredicted RBP20.76■□□□□ 0.91
CCDC88C-203ENST00000389856 KINO60870 393 aaKnown RBP20.76■□□□□ 0.91
CCDC88C-203ENST00000389856 TPM3P06753 285 aa20.76■□□□□ 0.91
CCDC88C-203ENST00000389856 CMA1P23946 247 aa20.76■□□□□ 0.91
CCDC88C-203ENST00000389856 TOB1P50616 345 aaPredicted RBP20.76■□□□□ 0.91
CCDC88C-203ENST00000389856 MRPL12P52815 198 aaKnown RBP20.76■□□□□ 0.91
CCDC88C-203ENST00000389856 TTC38Q5R3I4 469 aa20.76■□□□□ 0.91
CCDC88C-203ENST00000389856 SYDE2Q5VT97 1194 aa20.76■□□□□ 0.91
CCDC88C-203ENST00000389856 MCTP2Q6DN12 878 aa20.76■□□□□ 0.91
CCDC88C-203ENST00000389856 TTBK2Q6IQ55 1244 aa20.76■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms