RNA–Protein interactions for RNA: YIL030C

SSM4, Transcript of Ubiquitin-protein ligase involved in ER-associated protein degradation, yeast

Gene SSM4, Length 3,960 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSM4	YIL030C	ULP1	Q02724	621 aa		3.58	□□□□□ -1.84
SSM4	YIL030C	CEF1	Q03654	590 aa	Predicted RBP	3.58	□□□□□ -1.84
SSM4	YIL030C	DLT1	Q04216	342 aa		3.58	□□□□□ -1.84
SSM4	YIL030C	ARR1	Q06596	294 aa		3.58	□□□□□ -1.84
SSM4	YIL030C	GRS2	Q06817	618 aa		3.58	□□□□□ -1.84
SSM4	YIL030C	YOR214C	Q12282	236 aa		3.58	□□□□□ -1.84
SSM4	YIL030C	IES3	Q12345	250 aa		3.58	□□□□□ -1.84
SSM4	YIL030C	MIS1	P09440	975 aa	Known RBP	3.57	□□□□□ -1.84
SSM4	YIL030C	NHP6B	P11633	99 aa	Known RBP	3.57	□□□□□ -1.84
SSM4	YIL030C	RPT5	P33297	434 aa	Known RBP	3.57	□□□□□ -1.84
SSM4	YIL030C	HSP78	P33416	811 aa		3.57	□□□□□ -1.84
SSM4	YIL030C	IFA38	P38286	347 aa		3.57	□□□□□ -1.84
SSM4	YIL030C	YBR242W	P38331	238 aa		3.57	□□□□□ -1.84
SSM4	YIL030C	RCK1	P38622	512 aa		3.57	□□□□□ -1.84
SSM4	YIL030C	SSZ1	P38788	538 aa	Known RBP	3.57	□□□□□ -1.84
SSM4	YIL030C	YER186C	P40101	306 aa		3.57	□□□□□ -1.84
SSM4	YIL030C	ALR2	P43553	858 aa		3.57	□□□□□ -1.84
SSM4	YIL030C	SET2	P46995	733 aa	Known RBP	3.57	□□□□□ -1.84
SSM4	YIL030C	NOG2	P53742	486 aa	Known RBP	3.57	□□□□□ -1.84
SSM4	YIL030C	CIK1	Q01649	594 aa		3.57	□□□□□ -1.84
SSM4	YIL030C	TYW1	Q08960	810 aa	Known RBP	3.57	□□□□□ -1.84
SSM4	YIL030C	VPS5	Q92331	675 aa		3.57	□□□□□ -1.84
SSM4	YIL030C	MDL2	P33311	773 aa		3.57	□□□□□ -1.84
SSM4	YIL030C	YKR051W	P36142	418 aa		3.57	□□□□□ -1.84
SSM4	YIL030C	YBR138C	P38277	524 aa		3.57	□□□□□ -1.84
SSM4	YIL030C	STP2	P38704	541 aa		3.57	□□□□□ -1.84
SSM4	YIL030C	LAM1	P38851	1228 aa		3.57	□□□□□ -1.84
SSM4	YIL030C	YFL012W	P43580	148 aa		3.57	□□□□□ -1.84
SSM4	YIL030C	ROM1	P53046	1155 aa		3.57	□□□□□ -1.84
SSM4	YIL030C	PEX31	P53203	462 aa		3.57	□□□□□ -1.84
SSM4	YIL030C	YNL144C	P53907	740 aa		3.57	□□□□□ -1.84
SSM4	YIL030C	ARP9	Q05123	467 aa		3.57	□□□□□ -1.84
SSM4	YIL030C	YLL032C	Q07834	825 aa	Known RBP RIP-Chip data	3.57	□□□□□ -1.84	not detected
SSM4	YIL030C	PNS1	Q12412	539 aa		3.57	□□□□□ -1.84
SSM4	YIL030C	CYC1	P00044	109 aa	Predicted RBP	3.57	□□□□□ -1.84
SSM4	YIL030C	CDC19	P00549	500 aa	Known RBP	3.57	□□□□□ -1.84
SSM4	YIL030C	ASP3-2	P0CX77	362 aa		3.57	□□□□□ -1.84
SSM4	YIL030C	ASP3-3	P0CX78	362 aa		3.57	□□□□□ -1.84
SSM4	YIL030C	ASP3-4	P0CX79	362 aa		3.57	□□□□□ -1.84
SSM4	YIL030C	ASP3-1	P0CZ17	362 aa		3.57	□□□□□ -1.84
SSM4	YIL030C	FBA1	P14540	359 aa	Known RBP	3.57	□□□□□ -1.84
SSM4	YIL030C	TRM1	P15565	570 aa	Known RBP	3.57	□□□□□ -1.84
SSM4	YIL030C	ACO1	P19414	778 aa	Known RBP RIP-Chip data	3.57	□□□□□ -1.84	not detected
SSM4	YIL030C	GIT1	P25346	518 aa		3.57	□□□□□ -1.84
SSM4	YIL030C	GID7	P25569	745 aa		3.57	□□□□□ -1.84
SSM4	YIL030C	COQ2	P32378	372 aa		3.57	□□□□□ -1.84
SSM4	YIL030C	PEX2	P32800	271 aa		3.57	□□□□□ -1.84
SSM4	YIL030C	YBR071W	P38243	211 aa		3.57	□□□□□ -1.84
SSM4	YIL030C	EXO1	P39875	702 aa		3.57	□□□□□ -1.84
SSM4	YIL030C	IRC7	P43623	340 aa		3.57	□□□□□ -1.84
SSM4	YIL030C	IMD3	P50095	523 aa	Known RBP	3.57	□□□□□ -1.84
SSM4	YIL030C	MRH4	P53166	561 aa		3.57	□□□□□ -1.84
SSM4	YIL030C	MUK1	Q02866	612 aa		3.57	□□□□□ -1.84
SSM4	YIL030C	EMI2	Q04409	500 aa	Known RBP	3.57	□□□□□ -1.84
SSM4	YIL030C	SPC2	Q04969	178 aa		3.57	□□□□□ -1.84
SSM4	YIL030C	RRG1	Q12167	365 aa	Predicted RBP	3.57	□□□□□ -1.84
SSM4	YIL030C	YPL066W	Q12194	479 aa		3.57	□□□□□ -1.84
SSM4	YIL030C	PUF2	Q12221	1075 aa	Known RBP RIP-Chip data	3.57	□□□□□ -1.84	not detected
SSM4	YIL030C	PSF1	Q12488	208 aa		3.57	□□□□□ -1.84
SSM4	YIL030C	MOD5	P07884	428 aa		3.56	□□□□□ -1.84
SSM4	YIL030C	CHS1	P08004	1131 aa		3.56	□□□□□ -1.84
SSM4	YIL030C	GLN4	P13188	809 aa	Known RBP	3.56	□□□□□ -1.84
SSM4	YIL030C	DAP2	P18962	818 aa		3.56	□□□□□ -1.84
SSM4	YIL030C	URA10	P30402	227 aa		3.56	□□□□□ -1.84
SSM4	YIL030C	DGR2	P32330	852 aa		3.56	□□□□□ -1.84
SSM4	YIL030C	RMA1	P36001	430 aa	Known RBP	3.56	□□□□□ -1.84
SSM4	YIL030C	SAF1	P38352	637 aa		3.56	□□□□□ -1.84
SSM4	YIL030C	DDI1	P40087	428 aa		3.56	□□□□□ -1.84
SSM4	YIL030C	AYR1	P40471	297 aa		3.56	□□□□□ -1.84
SSM4	YIL030C	BUD13	P46947	266 aa	Predicted RBP	3.56	□□□□□ -1.84
SSM4	YIL030C	ASG7	P46993	209 aa		3.56	□□□□□ -1.84
SSM4	YIL030C	GCV1	P48015	400 aa		3.56	□□□□□ -1.84
SSM4	YIL030C	CPR8	P53728	308 aa		3.56	□□□□□ -1.84
SSM4	YIL030C	YNR068C	P53754	272 aa		3.56	□□□□□ -1.84
SSM4	YIL030C	NOP13	P53883	403 aa	Known RBP RIP-Chip data	3.56	□□□□□ -1.84	not detected
SSM4	YIL030C	YNL033W	P53964	284 aa		3.56	□□□□□ -1.84
SSM4	YIL030C	YNL019C	P53975	284 aa		3.56	□□□□□ -1.84
SSM4	YIL030C	NAN1	Q02931	896 aa	Known RBP	3.56	□□□□□ -1.84
SSM4	YIL030C	GCN5	Q03330	439 aa		3.56	□□□□□ -1.84
SSM4	YIL030C	NUT2	Q06213	157 aa		3.56	□□□□□ -1.84
SSM4	YIL030C	YDL124W	Q07551	312 aa	Known RBP	3.56	□□□□□ -1.84
SSM4	YIL030C	THP3	Q12049	470 aa	Known RBP	3.56	□□□□□ -1.84
SSM4	YIL030C	IOC2	Q12072	812 aa		3.56	□□□□□ -1.84
SSM4	YIL030C	TIF6	Q12522	245 aa	Known RBP	3.56	□□□□□ -1.84
SSM4	YIL030C	CAM1	P29547	415 aa	Known RBP	3.56	□□□□□ -1.84
SSM4	YIL030C	FUN30	P31380	1131 aa		3.56	□□□□□ -1.84
SSM4	YIL030C	NAB2	P32505	525 aa	Known RBP RIP-Chip data	3.56	□□□□□ -1.84	not detected
SSM4	YIL030C	THI80	P35202	319 aa		3.56	□□□□□ -1.84
SSM4	YIL030C	YEL025C	P39991	1188 aa		3.56	□□□□□ -1.84
SSM4	YIL030C	BPL1	P48445	690 aa	Predicted RBP	3.56	□□□□□ -1.84
SSM4	YIL030C	YML6	P51998	286 aa		3.56	□□□□□ -1.84
SSM4	YIL030C	YGR168C	P53293	376 aa		3.56	□□□□□ -1.84
SSM4	YIL030C	BLS1	Q06071	122 aa		3.56	□□□□□ -1.84
SSM4	YIL030C	MFG1	Q07684	458 aa		3.56	□□□□□ -1.84
SSM4	YIL030C	PST2	Q12335	198 aa	Known RBP	3.56	□□□□□ -1.84
SSM4	YIL030C	GTT2	Q12390	233 aa		3.56	□□□□□ -1.84
SSM4	YIL030C	YPL247C	Q12523	523 aa		3.56	□□□□□ -1.84
SSM4	YIL030C	ADF1	Q2V2Q1	113 aa		3.56	□□□□□ -1.84
SSM4	YIL030C	VCX1	Q99385	411 aa		3.56	□□□□□ -1.84
SSM4	YIL030C	SEC53	P07283	254 aa	Known RBP	3.56	□□□□□ -1.84

Retrieved 100 of 5,963 RNA–protein pairs in 165.3 ms