RNA–Protein interactions for RNA: ENST00000618902.1

SHMT1-211, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 5 BASIC

Gene SHMT1, Length 378 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-211ENST00000618902 MB21D2Q8IYB1 491 aaPredicted RBP6.18□□□□□ -1.42
SHMT1-211ENST00000618902 SLAIN1Q8ND83 568 aa6.18□□□□□ -1.42
SHMT1-211ENST00000618902 SOCS4Q8WXH5 440 aa6.18□□□□□ -1.42
SHMT1-211ENST00000618902 COA7Q96BR5 231 aa6.18□□□□□ -1.42
SHMT1-211ENST00000618902 NUP88Q99567 741 aaPredicted RBP6.18□□□□□ -1.42
SHMT1-211ENST00000618902 ZKSCAN3Q9BRR0 538 aa6.18□□□□□ -1.42
SHMT1-211ENST00000618902 USP26Q9BXU7 913 aa6.18□□□□□ -1.42
SHMT1-211ENST00000618902 ARHGEF10LQ9HCE6 1279 aa6.18□□□□□ -1.42
SHMT1-211ENST00000618902 ZSWIM5Q9P217 1185 aa6.18□□□□□ -1.42
SHMT1-211ENST00000618902 SRRDQ9UH36 339 aa6.18□□□□□ -1.42
SHMT1-211ENST00000618902 CTNNA3Q9UI47 895 aa6.18□□□□□ -1.42
SHMT1-211ENST00000618902 HPS5Q9UPZ3 1129 aa6.18□□□□□ -1.42
SHMT1-211ENST00000618902 RABGAP1Q9Y3P9 1069 aa6.18□□□□□ -1.42
SHMT1-211ENST00000618902 TRIM17Q9Y577 477 aa6.18□□□□□ -1.42
SHMT1-211ENST00000618902 LOC285556D6RIA3 1793 aa6.18□□□□□ -1.42
SHMT1-211ENST00000618902 DOCK3Q8IZD9 2030 aa6.18□□□□□ -1.42
SHMT1-211ENST00000618902 LAMA3Q16787 3333 aa6.17□□□□□ -1.42
SHMT1-211ENST00000618902 LAMA2P24043 3122 aaKnown RBP6.17□□□□□ -1.42
SHMT1-211ENST00000618902 RLFQ13129 1914 aa6.17□□□□□ -1.42
SHMT1-211ENST00000618902 KDM4AO75164 1064 aa6.17□□□□□ -1.42
SHMT1-211ENST00000618902 NDUFB10O96000 172 aa6.17□□□□□ -1.42
SHMT1-211ENST00000618902 TSPY3P0CV98 308 aa6.17□□□□□ -1.42
SHMT1-211ENST00000618902 TSPY8P0CW00 308 aa6.17□□□□□ -1.42
SHMT1-211ENST00000618902 CYP2C8P10632 490 aa6.17□□□□□ -1.42
SHMT1-211ENST00000618902 CPA1P15085 419 aa6.17□□□□□ -1.42
SHMT1-211ENST00000618902 VCAM1P19320 739 aa6.17□□□□□ -1.42
SHMT1-211ENST00000618902 UBXN2AP68543 259 aa6.17□□□□□ -1.42
SHMT1-211ENST00000618902 ATP2B2Q01814 1243 aa6.17□□□□□ -1.42
SHMT1-211ENST00000618902 COG2Q14746 738 aa6.17□□□□□ -1.42
SHMT1-211ENST00000618902 SEC23AQ15436 765 aa6.17□□□□□ -1.42
SHMT1-211ENST00000618902 SLC9C1Q4G0N8 1177 aa6.17□□□□□ -1.42
SHMT1-211ENST00000618902 CCDC178Q5BJE1 867 aa6.17□□□□□ -1.42
SHMT1-211ENST00000618902 KIAA1211Q6ZU35 1233 aa6.17□□□□□ -1.42
SHMT1-211ENST00000618902 CHST3Q7LGC8 479 aa6.17□□□□□ -1.42
SHMT1-211ENST00000618902 ZNF444Q8N0Y2 327 aaPredicted RBP6.17□□□□□ -1.42
SHMT1-211ENST00000618902 ABRAQ8N0Z2 381 aa6.17□□□□□ -1.42
SHMT1-211ENST00000618902 SPICE1Q8N0Z3 855 aa6.17□□□□□ -1.42
SHMT1-211ENST00000618902 LRRC47Q8N1G4 583 aaKnown RBP6.17□□□□□ -1.42
SHMT1-211ENST00000618902 ENAHQ8N8S7 591 aaPredicted RBP6.17□□□□□ -1.42
SHMT1-211ENST00000618902 GPRC5AQ8NFJ5 357 aa6.17□□□□□ -1.42
SHMT1-211ENST00000618902 MKL1Q969V6 931 aa6.17□□□□□ -1.42
SHMT1-211ENST00000618902 CHMP4CQ96CF2 233 aa6.17□□□□□ -1.42
SHMT1-211ENST00000618902 TRIM47Q96LD4 638 aa6.17□□□□□ -1.42
SHMT1-211ENST00000618902 TBC1D32Q96NH3 1257 aa6.17□□□□□ -1.42
SHMT1-211ENST00000618902 TMEM106CQ9BVX2 250 aa6.17□□□□□ -1.42
SHMT1-211ENST00000618902 VCPKMTQ9H867 229 aa6.17□□□□□ -1.42
SHMT1-211ENST00000618902 GOPCQ9HD26 462 aa6.17□□□□□ -1.42
SHMT1-211ENST00000618902 TOMM22Q9NS69 142 aa6.17□□□□□ -1.42
SHMT1-211ENST00000618902 TCP11L1Q9NUJ3 509 aa6.17□□□□□ -1.42
SHMT1-211ENST00000618902 FBXO28Q9NVF7 368 aa6.17□□□□□ -1.42
SHMT1-211ENST00000618902 SLC5A4Q9NY91 659 aa6.17□□□□□ -1.42
SHMT1-211ENST00000618902 NYAP2Q9P242 653 aa6.17□□□□□ -1.42
SHMT1-211ENST00000618902 CLIP2Q9UDT6 1046 aa6.17□□□□□ -1.42
SHMT1-211ENST00000618902 TMX2Q9Y320 296 aa6.17□□□□□ -1.42
SHMT1-211ENST00000618902 SNX14Q9Y5W7 946 aa6.17□□□□□ -1.42
SHMT1-211ENST00000618902 BAZ2BQ9UIF8 2168 aaKnown RBP6.17□□□□□ -1.42
SHMT1-211ENST00000618902 MYH4Q9Y623 1939 aa6.17□□□□□ -1.42
SHMT1-211ENST00000618902 TSPY2A6NKD2 308 aa6.16□□□□□ -1.42
SHMT1-211ENST00000618902 SPDYE4A6NLX3 237 aa6.16□□□□□ -1.42
SHMT1-211ENST00000618902 WDR46O15213 610 aaKnown RBP6.16□□□□□ -1.42
SHMT1-211ENST00000618902 PLA2G6O60733 806 aa6.16□□□□□ -1.42
SHMT1-211ENST00000618902 CNMDO75829 334 aa6.16□□□□□ -1.42
SHMT1-211ENST00000618902 FMNL1O95466 1100 aaPredicted RBP6.16□□□□□ -1.42
SHMT1-211ENST00000618902 SLC25A27O95847 323 aa6.16□□□□□ -1.42
SHMT1-211ENST00000618902 CTGFP29279 349 aa6.16□□□□□ -1.42
SHMT1-211ENST00000618902 HSPA4P34932 840 aa6.16□□□□□ -1.42
SHMT1-211ENST00000618902 PSMC4P43686 418 aa6.16□□□□□ -1.42
SHMT1-211ENST00000618902 HERVK_113P62684 666 aa6.16□□□□□ -1.42
SHMT1-211ENST00000618902 EXOSC10Q01780 885 aaKnown RBP6.16□□□□□ -1.42
SHMT1-211ENST00000618902 MLLT1Q03111 559 aaPredicted RBP6.16□□□□□ -1.42
SHMT1-211ENST00000618902 SLC35G1Q2M3R5 365 aa6.16□□□□□ -1.42
SHMT1-211ENST00000618902 TSGA10IPQ3SY00 556 aa6.16□□□□□ -1.42
SHMT1-211ENST00000618902 CATSPERGQ6ZRH7 1159 aa6.16□□□□□ -1.42
SHMT1-211ENST00000618902 SHCBP1Q8NEM2 672 aa6.16□□□□□ -1.42
SHMT1-211ENST00000618902 RAET1EQ8TD07 263 aa6.16□□□□□ -1.42
SHMT1-211ENST00000618902 IGDCC4Q8TDY8 1250 aa6.16□□□□□ -1.42
SHMT1-211ENST00000618902 ANKS1AQ92625 1134 aa6.16□□□□□ -1.42
SHMT1-211ENST00000618902 SNX21Q969T3 373 aa6.16□□□□□ -1.42
SHMT1-211ENST00000618902 ZNF333Q96JL9 665 aa6.16□□□□□ -1.42
SHMT1-211ENST00000618902 TCEANC2Q96MN5 208 aa6.16□□□□□ -1.42
SHMT1-211ENST00000618902 TTC14Q96N46 770 aa6.16□□□□□ -1.42
SHMT1-211ENST00000618902 P2RX7Q99572 595 aaKnown RBP6.16□□□□□ -1.42
SHMT1-211ENST00000618902 FEZ1Q99689 392 aa6.16□□□□□ -1.42
SHMT1-211ENST00000618902 TMEM47Q9BQJ4 181 aa6.16□□□□□ -1.42
SHMT1-211ENST00000618902 LRRC2Q9BYS8 371 aa6.16□□□□□ -1.42
SHMT1-211ENST00000618902 TANGO6Q9C0B7 1094 aa6.16□□□□□ -1.42
SHMT1-211ENST00000618902 ASCC2Q9H1I8 757 aaPredicted RBP6.16□□□□□ -1.42
SHMT1-211ENST00000618902 RNF41Q9H4P4 317 aaPredicted RBP6.16□□□□□ -1.42
SHMT1-211ENST00000618902 RPAP3Q9H6T3 665 aaPredicted RBP6.16□□□□□ -1.42
SHMT1-211ENST00000618902 TXNRD2Q9NNW7 524 aa6.16□□□□□ -1.42
SHMT1-211ENST00000618902 CPA4Q9UI42 421 aa6.16□□□□□ -1.42
SHMT1-211ENST00000618902 CIZ1Q9ULV3 898 aaPredicted RBP6.16□□□□□ -1.42
SHMT1-211ENST00000618902 SMCHD1A6NHR9 2005 aa6.16□□□□□ -1.42
SHMT1-211ENST00000618902 ZSWIM8A7E2V4 1837 aa6.15□□□□□ -1.42
SHMT1-211ENST00000618902 CCDC85CA6NKD9 419 aa6.15□□□□□ -1.42
SHMT1-211ENST00000618902 F5H6K3 240 aa6.15□□□□□ -1.42
SHMT1-211ENST00000618902 TNPO2O14787 897 aaKnown RBP6.15□□□□□ -1.42
SHMT1-211ENST00000618902 ATP2A1O14983 1001 aa6.15□□□□□ -1.42
SHMT1-211ENST00000618902 TTLL1O95922 423 aa6.15□□□□□ -1.42
SHMT1-211ENST00000618902 HOXC6P09630 235 aa6.15□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms