RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 NAPBQ9H115 298 aa22.73■■□□□ 1.23
CCDC28A-203ENST00000617445 ZNF236Q9UL36 1845 aa22.73■■□□□ 1.23
CCDC28A-203ENST00000617445 MSCO60682 206 aa22.72■■□□□ 1.23
CCDC28A-203ENST00000617445 COPB2P35606 906 aa22.72■■□□□ 1.23
CCDC28A-203ENST00000617445 OLFML2BQ68BL8 750 aa22.72■■□□□ 1.23
CCDC28A-203ENST00000617445 MKL1Q969V6 931 aa22.72■■□□□ 1.23
CCDC28A-203ENST00000617445 PPP1R9AQ9ULJ8 1098 aa22.72■■□□□ 1.23
CCDC28A-203ENST00000617445 TRIOBPQ9H2D6 2365 aa22.71■■□□□ 1.23
CCDC28A-203ENST00000617445 IGKV6D-41A0A0C4DH26 115 aa22.71■■□□□ 1.23
CCDC28A-203ENST00000617445 ADORA2AP29274 412 aa22.71■■□□□ 1.23
CCDC28A-203ENST00000617445 PPP4R3BQ5MIZ7 849 aa22.71■■□□□ 1.23
CCDC28A-203ENST00000617445 NCAPG2Q86XI2 1143 aa22.71■■□□□ 1.23
CCDC28A-203ENST00000617445 STK11IPQ8N1F8 1099 aa22.71■■□□□ 1.23
CCDC28A-203ENST00000617445 COLQQ9Y215 455 aaPredicted RBP22.71■■□□□ 1.23
CCDC28A-203ENST00000617445 F5H6K3 240 aa22.7■■□□□ 1.22
CCDC28A-203ENST00000617445 VWA5AO00534 786 aa22.7■■□□□ 1.22
CCDC28A-203ENST00000617445 RAD21O60216 631 aa22.7■■□□□ 1.22
CCDC28A-203ENST00000617445 IGHA2P01877 340 aa22.7■■□□□ 1.22
CCDC28A-203ENST00000617445 FCER1AP12319 257 aa22.7■■□□□ 1.22
CCDC28A-203ENST00000617445 CCND3P30281 292 aaPredicted RBP22.7■■□□□ 1.22
CCDC28A-203ENST00000617445 KLRC3Q07444 240 aa22.7■■□□□ 1.22
CCDC28A-203ENST00000617445 TMEM132BQ14DG7 1078 aa22.7■■□□□ 1.22
CCDC28A-203ENST00000617445 FAM83BQ5T0W9 1011 aa22.7■■□□□ 1.22
CCDC28A-203ENST00000617445 LHX8Q68G74 356 aa22.7■■□□□ 1.22
CCDC28A-203ENST00000617445 RIOX2Q8IUF8 465 aa22.7■■□□□ 1.22
CCDC28A-203ENST00000617445 NPLOC4Q8TAT6 608 aa22.7■■□□□ 1.22
CCDC28A-203ENST00000617445 HELLSQ9NRZ9 838 aa22.7■■□□□ 1.22
CCDC28A-203ENST00000617445 MTMR4Q9NYA4 1195 aa22.7■■□□□ 1.22
CCDC28A-203ENST00000617445 FLRT1Q9NZU1 646 aa22.7■■□□□ 1.22
CCDC28A-203ENST00000617445 CLIP2Q9UDT6 1046 aa22.7■■□□□ 1.22
CCDC28A-203ENST00000617445 ZNFX1Q9P2E3 1918 aaKnown RBP22.7■■□□□ 1.22
CCDC28A-203ENST00000617445 MYH4Q9Y623 1939 aa22.7■■□□□ 1.22
CCDC28A-203ENST00000617445 PLIN4Q96Q06 1357 aa22.69■■□□□ 1.22
CCDC28A-203ENST00000617445 TTLL1O95922 423 aa22.69■■□□□ 1.22
CCDC28A-203ENST00000617445 MNX1P50219 401 aaPredicted RBP22.69■■□□□ 1.22
CCDC28A-203ENST00000617445 PPARAQ07869 468 aa22.69■■□□□ 1.22
CCDC28A-203ENST00000617445 SMC5Q8IY18 1101 aa22.69■■□□□ 1.22
CCDC28A-203ENST00000617445 NEDD1Q8NHV4 660 aa22.69■■□□□ 1.22
CCDC28A-203ENST00000617445 DIS3LQ8TF46 1054 aaKnown RBP22.69■■□□□ 1.22
CCDC28A-203ENST00000617445 C11orf49Q9H6J7 331 aa22.69■■□□□ 1.22
CCDC28A-203ENST00000617445 COL11A1P12107 1806 aaPredicted RBP22.68■■□□□ 1.22
CCDC28A-203ENST00000617445 PRDM1O75626 825 aa22.68■■□□□ 1.22
CCDC28A-203ENST00000617445 TSPY3P0CV98 308 aa22.68■■□□□ 1.22
CCDC28A-203ENST00000617445 TSPY8P0CW00 308 aa22.68■■□□□ 1.22
CCDC28A-203ENST00000617445 STAT3P40763 770 aa22.68■■□□□ 1.22
CCDC28A-203ENST00000617445 SAMD1Q6SPF0 538 aaPredicted RBP22.68■■□□□ 1.22
CCDC28A-203ENST00000617445 PRPF38AQ8NAV1 312 aaKnown RBP22.68■■□□□ 1.22
CCDC28A-203ENST00000617445 SLF1Q9BQI6 1058 aa22.68■■□□□ 1.22
CCDC28A-203ENST00000617445 FBXO28Q9NVF7 368 aa22.68■■□□□ 1.22
CCDC28A-203ENST00000617445 NDUFB10O96000 172 aa22.67■■□□□ 1.22
CCDC28A-203ENST00000617445 GMCL1P1Q8NEA9 526 aa22.67■■□□□ 1.22
CCDC28A-203ENST00000617445 CEP95Q96GE4 821 aa22.67■■□□□ 1.22
CCDC28A-203ENST00000617445 CYP2C19P33261 490 aa22.66■■□□□ 1.22
CCDC28A-203ENST00000617445 ALX1Q15699 326 aa22.66■■□□□ 1.22
CCDC28A-203ENST00000617445 LNPKQ9C0E8 428 aa22.66■■□□□ 1.22
CCDC28A-203ENST00000617445 DDX20Q9UHI6 824 aaKnown RBP22.66■■□□□ 1.22
CCDC28A-203ENST00000617445 ZNF214Q9UL59 606 aaPredicted RBP22.66■■□□□ 1.22
CCDC28A-203ENST00000617445 COBLO75128 1261 aa22.65■■□□□ 1.22
CCDC28A-203ENST00000617445 CNGA1P29973 690 aa22.65■■□□□ 1.22
CCDC28A-203ENST00000617445 TFAP4Q01664 338 aa22.65■■□□□ 1.22
CCDC28A-203ENST00000617445 KCTD2Q14681 263 aa22.65■■□□□ 1.22
CCDC28A-203ENST00000617445 MCMDC2Q4G0Z9 681 aa22.65■■□□□ 1.22
CCDC28A-203ENST00000617445 CHRDL2Q6WN34 429 aa22.65■■□□□ 1.22
CCDC28A-203ENST00000617445 REPS2Q8NFH8 660 aa22.65■■□□□ 1.22
CCDC28A-203ENST00000617445 MMP19Q99542 508 aa22.65■■□□□ 1.22
CCDC28A-203ENST00000617445 PCDH10Q9P2E7 1040 aa22.65■■□□□ 1.22
CCDC28A-203ENST00000617445 ANAPC4Q9UJX5 808 aa22.65■■□□□ 1.22
CCDC28A-203ENST00000617445 FEM1BQ9UK73 627 aa22.65■■□□□ 1.22
CCDC28A-203ENST00000617445 DIS3Q9Y2L1 958 aaKnown RBP22.65■■□□□ 1.22
CCDC28A-203ENST00000617445 ALPK3Q96L96 1907 aa22.65■■□□□ 1.22
CCDC28A-203ENST00000617445 ATP2A1O14983 1001 aa22.64■■□□□ 1.21
CCDC28A-203ENST00000617445 FDX1P10109 184 aa22.64■■□□□ 1.21
CCDC28A-203ENST00000617445 COL6A1P12109 1028 aa22.64■■□□□ 1.21
CCDC28A-203ENST00000617445 CYBAP13498 195 aa22.64■■□□□ 1.21
CCDC28A-203ENST00000617445 CCDC129Q6ZRS4 1044 aa22.64■■□□□ 1.21
CCDC28A-203ENST00000617445 TEX13BQ9BXU2 312 aa22.64■■□□□ 1.21
CCDC28A-203ENST00000617445 NRBP1Q9UHY1 535 aa22.64■■□□□ 1.21
CCDC28A-203ENST00000617445 FOXP2O15409 715 aa22.63■■□□□ 1.21
CCDC28A-203ENST00000617445 ZBED4O75132 1171 aa22.63■■□□□ 1.21
CCDC28A-203ENST00000617445 CHD1LQ86WJ1 897 aa22.63■■□□□ 1.21
CCDC28A-203ENST00000617445 MAML3Q96JK9 1138 aa22.63■■□□□ 1.21
CCDC28A-203ENST00000617445 NUP88Q99567 741 aaPredicted RBP22.63■■□□□ 1.21
CCDC28A-203ENST00000617445 OSBPL3Q9H4L5 887 aa22.63■■□□□ 1.21
CCDC28A-203ENST00000617445 DDX52Q9Y2R4 599 aaKnown RBP eCLIP22.63■■□□□ 1.21
CCDC28A-203ENST00000617445 CTDP1Q9Y5B0 961 aaPredicted RBP22.63■■□□□ 1.21
CCDC28A-203ENST00000617445 FRMPD3Q5JV73 1810 aa22.62■■□□□ 1.21
CCDC28A-203ENST00000617445 NUCB1Q02818 461 aa22.62■■□□□ 1.21
CCDC28A-203ENST00000617445 FAM47AQ5JRC9 791 aa22.62■■□□□ 1.21
CCDC28A-203ENST00000617445 PFASO15067 1338 aa22.61■■□□□ 1.21
CCDC28A-203ENST00000617445 A0A1W2PPC1 479 aa22.61■■□□□ 1.21
CCDC28A-203ENST00000617445 TSPY2A6NKD2 308 aa22.61■■□□□ 1.21
CCDC28A-203ENST00000617445 TRIM6-TRIM34B2RNG4 842 aa22.61■■□□□ 1.21
CCDC28A-203ENST00000617445 SEPT4O43236 478 aa22.61■■□□□ 1.21
CCDC28A-203ENST00000617445 ORC4O43929 436 aa22.61■■□□□ 1.21
CCDC28A-203ENST00000617445 BMP3P12645 472 aa22.61■■□□□ 1.21
CCDC28A-203ENST00000617445 FXR1P51114 621 aaKnown RBP eCLIP22.61■■□□□ 1.21
CCDC28A-203ENST00000617445 OAZ1P54368 228 aa22.61■■□□□ 1.21
CCDC28A-203ENST00000617445 MFAP1P55081 439 aaKnown RBP22.61■■□□□ 1.21
CCDC28A-203ENST00000617445 SLFN13Q68D06 897 aa22.61■■□□□ 1.21
CCDC28A-203ENST00000617445 B4GALNT3Q6L9W6 998 aa22.61■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms