RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 PPP1R9AQ9ULJ8 1098 aa16.29■□□□□ 0.2
TRIM28-211ENST00000597968 ZMYND8Q9ULU4 1186 aaPredicted RBP16.29■□□□□ 0.2
TRIM28-211ENST00000597968 MYH7P12883 1935 aa16.29■□□□□ 0.2
TRIM28-211ENST00000597968 MYH8P13535 1937 aa16.29■□□□□ 0.2
TRIM28-211ENST00000597968 CYP2D7A0A087X1C5 515 aa16.28■□□□□ 0.2
TRIM28-211ENST00000597968 GSG1L2A8MUP6 293 aa16.28■□□□□ 0.2
TRIM28-211ENST00000597968 VWA5AO00534 786 aa16.28■□□□□ 0.2
TRIM28-211ENST00000597968 SMARCA5O60264 1052 aaPredicted RBP16.28■□□□□ 0.2
TRIM28-211ENST00000597968 COBLO75128 1261 aa16.28■□□□□ 0.2
TRIM28-211ENST00000597968 PLS1Q14651 629 aa16.28■□□□□ 0.2
TRIM28-211ENST00000597968 TMEM132BQ14DG7 1078 aa16.28■□□□□ 0.2
TRIM28-211ENST00000597968 LRRC26Q2I0M4 334 aa16.28■□□□□ 0.2
TRIM28-211ENST00000597968 SLFNL1Q499Z3 407 aa16.28■□□□□ 0.2
TRIM28-211ENST00000597968 C1orf53Q5VUE5 145 aa16.28■□□□□ 0.2
TRIM28-211ENST00000597968 MAML3Q96JK9 1138 aa16.28■□□□□ 0.2
TRIM28-211ENST00000597968 SENP6Q9GZR1 1112 aaPredicted RBP16.28■□□□□ 0.2
TRIM28-211ENST00000597968 PATL2C9JE40 543 aaKnown RBP16.27■□□□□ 0.2
TRIM28-211ENST00000597968 KBTBD13C9JR72 458 aa16.27■□□□□ 0.2
TRIM28-211ENST00000597968 ATP2A1O14983 1001 aa16.27■□□□□ 0.2
TRIM28-211ENST00000597968 RASA1P20936 1047 aa16.27■□□□□ 0.2
TRIM28-211ENST00000597968 STAT3P40763 770 aa16.27■□□□□ 0.2
TRIM28-211ENST00000597968 KCTD2Q14681 263 aa16.27■□□□□ 0.2
TRIM28-211ENST00000597968 PPP4R3BQ5MIZ7 849 aa16.27■□□□□ 0.2
TRIM28-211ENST00000597968 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.27■□□□□ 0.26e-9■■□□□ 12.4
TRIM28-211ENST00000597968 TICAM2Q86XR7 235 aa16.27■□□□□ 0.2
TRIM28-211ENST00000597968 PRPF38AQ8NAV1 312 aaKnown RBP16.27■□□□□ 0.2
TRIM28-211ENST00000597968 OSBP2Q969R2 916 aa16.27■□□□□ 0.2
TRIM28-211ENST00000597968 MKL1Q969V6 931 aa16.27■□□□□ 0.2
TRIM28-211ENST00000597968 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.27■□□□□ 0.2
TRIM28-211ENST00000597968 NACAP1Q9BZK3 213 aa16.27■□□□□ 0.2
TRIM28-211ENST00000597968 UBE2OQ9C0C9 1292 aaKnown RBP16.27■□□□□ 0.2
TRIM28-211ENST00000597968 BAZ2AQ9UIF9 1905 aaKnown RBP16.26■□□□□ 0.19
TRIM28-211ENST00000597968 GPAA1O43292 621 aa16.26■□□□□ 0.19
TRIM28-211ENST00000597968 FDX1P10109 184 aa16.26■□□□□ 0.19
TRIM28-211ENST00000597968 CLEC10AQ8IUN9 316 aa16.26■□□□□ 0.19
TRIM28-211ENST00000597968 ZNF444Q8N0Y2 327 aaPredicted RBP16.26■□□□□ 0.19
TRIM28-211ENST00000597968 TRPV1Q8NER1 839 aa16.26■□□□□ 0.19
TRIM28-211ENST00000597968 MMP19Q99542 508 aa16.26■□□□□ 0.19
TRIM28-211ENST00000597968 TEX13BQ9BXU2 312 aa16.26■□□□□ 0.19
TRIM28-211ENST00000597968 PRKAG2Q9UGJ0 569 aa16.26■□□□□ 0.19
TRIM28-211ENST00000597968 ZNF214Q9UL59 606 aaPredicted RBP16.26■□□□□ 0.19
TRIM28-211ENST00000597968 FRMPD3Q5JV73 1810 aa16.25■□□□□ 0.19
TRIM28-211ENST00000597968 F5H6K3 240 aa16.25■□□□□ 0.19
TRIM28-211ENST00000597968 CHGBP05060 677 aa16.25■□□□□ 0.19
TRIM28-211ENST00000597968 SLC3A2P08195 630 aaKnown RBP16.25■□□□□ 0.19
TRIM28-211ENST00000597968 SYN1P17600 705 aa16.25■□□□□ 0.19
TRIM28-211ENST00000597968 KLRC3Q07444 240 aa16.25■□□□□ 0.19
TRIM28-211ENST00000597968 SNX17Q15036 470 aa16.25■□□□□ 0.19
TRIM28-211ENST00000597968 REPS2Q8NFH8 660 aa16.25■□□□□ 0.19
TRIM28-211ENST00000597968 LBHD1Q9BQE6 289 aaPredicted RBP16.25■□□□□ 0.19
TRIM28-211ENST00000597968 SLF1Q9BQI6 1058 aa16.25■□□□□ 0.19
TRIM28-211ENST00000597968 TINF2Q9BSI4 451 aa16.25■□□□□ 0.19
TRIM28-211ENST00000597968 GREB1LQ9C091 1923 aaPredicted RBP16.25■□□□□ 0.19
TRIM28-211ENST00000597968 PLIN4Q96Q06 1357 aa16.25■□□□□ 0.19
TRIM28-211ENST00000597968 IGKV6D-41A0A0C4DH26 115 aa16.24■□□□□ 0.19
TRIM28-211ENST00000597968 SOX1O00570 391 aaPredicted RBP16.24■□□□□ 0.19
TRIM28-211ENST00000597968 TDO2P48775 406 aa16.24■□□□□ 0.19
TRIM28-211ENST00000597968 OAZ1P54368 228 aa16.24■□□□□ 0.19
TRIM28-211ENST00000597968 PDE4BQ07343 736 aa16.24■□□□□ 0.19
TRIM28-211ENST00000597968 ZNF792Q3KQV3 632 aa16.24■□□□□ 0.19
TRIM28-211ENST00000597968 FAM83BQ5T0W9 1011 aa16.24■□□□□ 0.19
TRIM28-211ENST00000597968 MINDY4BA8MYZ0 360 aa16.23■□□□□ 0.19
TRIM28-211ENST00000597968 SMIM22K7EJ46 135 aa16.23■□□□□ 0.19
TRIM28-211ENST00000597968 TTLL1O95922 423 aa16.23■□□□□ 0.19
TRIM28-211ENST00000597968 RARBP10826 455 aa16.23■□□□□ 0.19
TRIM28-211ENST00000597968 SLC39A5Q6ZMH5 540 aa16.23■□□□□ 0.19
TRIM28-211ENST00000597968 ZNF467Q7Z7K2 595 aaPredicted RBP16.23■□□□□ 0.19
TRIM28-211ENST00000597968 IFNL3Q8IZI9 196 aa16.23■□□□□ 0.19
TRIM28-211ENST00000597968 GMCL1P1Q8NEA9 526 aa16.23■□□□□ 0.19
TRIM28-211ENST00000597968 FBXO28Q9NVF7 368 aa16.23■□□□□ 0.19
TRIM28-211ENST00000597968 MTMR4Q9NYA4 1195 aa16.23■□□□□ 0.19
TRIM28-211ENST00000597968 FBXO40Q9UH90 709 aa16.23■□□□□ 0.19
TRIM28-211ENST00000597968 FEM1BQ9UK73 627 aa16.23■□□□□ 0.19
TRIM28-211ENST00000597968 PARP14Q460N5 1801 aa16.23■□□□□ 0.19
TRIM28-211ENST00000597968 SYNGAP1Q96PV0 1343 aa16.22■□□□□ 0.19
TRIM28-211ENST00000597968 ZBED4O75132 1171 aa16.22■□□□□ 0.19
TRIM28-211ENST00000597968 APPP05067 770 aa16.22■□□□□ 0.19
TRIM28-211ENST00000597968 MAMDC4Q6UXC1 1216 aa16.22■□□□□ 0.19
TRIM28-211ENST00000597968 RNF180Q86T96 592 aa16.22■□□□□ 0.19
TRIM28-211ENST00000597968 PI4K2BQ8TCG2 481 aa16.22■□□□□ 0.19
TRIM28-211ENST00000597968 LRCH3Q96II8 777 aa16.22■□□□□ 0.19
TRIM28-211ENST00000597968 EPB41L4AQ9HCS5 686 aaPredicted RBP16.22■□□□□ 0.19
TRIM28-211ENST00000597968 CNPY2Q9Y2B0 182 aa16.22■□□□□ 0.19
TRIM28-211ENST00000597968 COL6A3P12111 3177 aa16.22■□□□□ 0.19
TRIM28-211ENST00000597968 NDUFB10O96000 172 aa16.21■□□□□ 0.19
TRIM28-211ENST00000597968 AKR1A1P14550 325 aa16.21■□□□□ 0.19
TRIM28-211ENST00000597968 RTP1P59025 263 aa16.21■□□□□ 0.19
TRIM28-211ENST00000597968 AAMPQ13685 434 aa16.21■□□□□ 0.19
TRIM28-211ENST00000597968 LRRC41Q15345 812 aa16.21■□□□□ 0.19
TRIM28-211ENST00000597968 ZMYM1Q5SVZ6 1142 aa16.21■□□□□ 0.19
TRIM28-211ENST00000597968 GJC2Q5T442 439 aaPredicted RBP16.21■□□□□ 0.19
TRIM28-211ENST00000597968 FAM109BQ6ICB4 259 aaPredicted RBP16.21■□□□□ 0.19
TRIM28-211ENST00000597968 CHST13Q8NET6 341 aa16.21■□□□□ 0.19
TRIM28-211ENST00000597968 NEDD1Q8NHV4 660 aa16.21■□□□□ 0.19
TRIM28-211ENST00000597968 TSEN34Q9BSV6 310 aaKnown RBP16.21■□□□□ 0.19
TRIM28-211ENST00000597968 CLIP2Q9UDT6 1046 aa16.21■□□□□ 0.19
TRIM28-211ENST00000597968 ZBTB47Q9UFB7 747 aaPredicted RBP16.21■□□□□ 0.19
TRIM28-211ENST00000597968 CTDP1Q9Y5B0 961 aaPredicted RBP16.21■□□□□ 0.19
TRIM28-211ENST00000597968 DNAJC25-GNG10A0A024R161 153 aa16.2■□□□□ 0.18
TRIM28-211ENST00000597968 RAD21O60216 631 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms