RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 ZFYP08048 801 aaPredicted RBP20.52■□□□□ 0.87
CLN3-216ENST00000565316 RASA1P20936 1047 aa20.52■□□□□ 0.87
CLN3-216ENST00000565316 TSHZ3Q63HK5 1081 aa20.52■□□□□ 0.87
CLN3-216ENST00000565316 NCAPG2Q86XI2 1143 aa20.52■□□□□ 0.87
CLN3-216ENST00000565316 FBXO28Q9NVF7 368 aa20.52■□□□□ 0.87
CLN3-216ENST00000565316 PARP14Q460N5 1801 aa20.51■□□□□ 0.87
CLN3-216ENST00000565316 VWA5AO00534 786 aa20.51■□□□□ 0.87
CLN3-216ENST00000565316 FCER1AP12319 257 aa20.51■□□□□ 0.87
CLN3-216ENST00000565316 RIOX2Q8IUF8 465 aa20.51■□□□□ 0.87
CLN3-216ENST00000565316 LRCH3Q96II8 777 aa20.51■□□□□ 0.87
CLN3-216ENST00000565316 SENP6Q9GZR1 1112 aaPredicted RBP20.51■□□□□ 0.87
CLN3-216ENST00000565316 PPP1R9AQ9ULJ8 1098 aa20.51■□□□□ 0.87
CLN3-216ENST00000565316 GREB1LQ9C091 1923 aaPredicted RBP20.5■□□□□ 0.87
CLN3-216ENST00000565316 SEPT4O43236 478 aa20.5■□□□□ 0.87
CLN3-216ENST00000565316 REPS2Q8NFH8 660 aa20.5■□□□□ 0.87
CLN3-216ENST00000565316 MAML3Q96JK9 1138 aa20.5■□□□□ 0.87
CLN3-216ENST00000565316 EPB41L4AQ9HCS5 686 aaPredicted RBP20.5■□□□□ 0.87
CLN3-216ENST00000565316 NYAP2Q9P242 653 aa20.5■□□□□ 0.87
CLN3-216ENST00000565316 IGKV6D-41A0A0C4DH26 115 aa20.49■□□□□ 0.87
CLN3-216ENST00000565316 GPAA1O43292 621 aa20.49■□□□□ 0.87
CLN3-216ENST00000565316 GNAT2P19087 354 aa20.49■□□□□ 0.87
CLN3-216ENST00000565316 LRIT3Q3SXY7 679 aa20.49■□□□□ 0.87
CLN3-216ENST00000565316 FAM83BQ5T0W9 1011 aa20.49■□□□□ 0.87
CLN3-216ENST00000565316 GPR153Q6NV75 609 aa20.49■□□□□ 0.87
CLN3-216ENST00000565316 ARRDC4Q8NCT1 418 aa20.49■□□□□ 0.87
CLN3-216ENST00000565316 MKNK2Q9HBH9 465 aa20.49■□□□□ 0.87
CLN3-216ENST00000565316 ZNF214Q9UL59 606 aaPredicted RBP20.49■□□□□ 0.87
CLN3-216ENST00000565316 PCDHB15Q9Y5E8 787 aa20.49■□□□□ 0.87
CLN3-216ENST00000565316 TTC41PQ6P2S7 1318 aa20.48■□□□□ 0.87
CLN3-216ENST00000565316 MINDY4BA8MYZ0 360 aa20.48■□□□□ 0.87
CLN3-216ENST00000565316 M0R2C6 588 aa20.48■□□□□ 0.87
CLN3-216ENST00000565316 STAT3P40763 770 aa20.48■□□□□ 0.87
CLN3-216ENST00000565316 SAMD1Q6SPF0 538 aaPredicted RBP20.48■□□□□ 0.87
CLN3-216ENST00000565316 TDHQ8IZJ6 230 aa20.48■□□□□ 0.87
CLN3-216ENST00000565316 NRBP1Q9UHY1 535 aa20.48■□□□□ 0.87
CLN3-216ENST00000565316 PATL2C9JE40 543 aaKnown RBP20.47■□□□□ 0.87
CLN3-216ENST00000565316 COPB2P35606 906 aa20.47■□□□□ 0.87
CLN3-216ENST00000565316 LRRFIP1Q32MZ4 808 aaKnown RBP20.47■□□□□ 0.87
CLN3-216ENST00000565316 PRAMEF19Q5SWL8 479 aa20.47■□□□□ 0.87
CLN3-216ENST00000565316 PI4K2BQ8TCG2 481 aa20.47■□□□□ 0.87
CLN3-216ENST00000565316 MKL1Q969V6 931 aa20.47■□□□□ 0.87
CLN3-216ENST00000565316 MMP19Q99542 508 aa20.47■□□□□ 0.87
CLN3-216ENST00000565316 UBE2OQ9C0C9 1292 aaKnown RBP20.47■□□□□ 0.87
CLN3-216ENST00000565316 DIS3Q9Y2L1 958 aaKnown RBP20.47■□□□□ 0.87
CLN3-216ENST00000565316 F5H6K3 240 aa20.46■□□□□ 0.87
CLN3-216ENST00000565316 KLRC3Q07444 240 aa20.46■□□□□ 0.87
CLN3-216ENST00000565316 ZNF792Q3KQV3 632 aa20.46■□□□□ 0.87
CLN3-216ENST00000565316 GJC2Q5T442 439 aaPredicted RBP20.46■□□□□ 0.87
CLN3-216ENST00000565316 SLF1Q9BQI6 1058 aa20.46■□□□□ 0.87
CLN3-216ENST00000565316 ERC2O15083 957 aa20.45■□□□□ 0.86
CLN3-216ENST00000565316 NDUFB10O96000 172 aa20.45■□□□□ 0.86
CLN3-216ENST00000565316 PGK2P07205 417 aa20.45■□□□□ 0.86
CLN3-216ENST00000565316 TDO2P48775 406 aa20.45■□□□□ 0.86
CLN3-216ENST00000565316 ATN1P54259 1190 aaPredicted RBP20.45■□□□□ 0.86
CLN3-216ENST00000565316 KCTD2Q14681 263 aa20.45■□□□□ 0.86
CLN3-216ENST00000565316 IFNL3Q8IZI9 196 aa20.45■□□□□ 0.86
CLN3-216ENST00000565316 STK11IPQ8N1F8 1099 aa20.45■□□□□ 0.86
CLN3-216ENST00000565316 NUP88Q99567 741 aaPredicted RBP20.45■□□□□ 0.86
CLN3-216ENST00000565316 ZNF287Q9HBT7 754 aa20.45■□□□□ 0.86
CLN3-216ENST00000565316 SYNPO2Q9UMS6 1093 aa20.45■□□□□ 0.86
CLN3-216ENST00000565316 KBTBD13C9JR72 458 aa20.44■□□□□ 0.86
CLN3-216ENST00000565316 RAD21O60216 631 aa20.44■□□□□ 0.86
CLN3-216ENST00000565316 ANO1Q5XXA6 986 aa20.44■□□□□ 0.86
CLN3-216ENST00000565316 PRPF38AQ8NAV1 312 aaKnown RBP20.44■□□□□ 0.86
CLN3-216ENST00000565316 OTUD7AQ8TE49 926 aaPredicted RBP20.44■□□□□ 0.86
CLN3-216ENST00000565316 TINF2Q9BSI4 451 aa20.44■□□□□ 0.86
CLN3-216ENST00000565316 TEX13BQ9BXU2 312 aa20.44■□□□□ 0.86
CLN3-216ENST00000565316 CLIP2Q9UDT6 1046 aa20.44■□□□□ 0.86
CLN3-216ENST00000565316 COL11A1P12107 1806 aaPredicted RBP20.44■□□□□ 0.86
CLN3-216ENST00000565316 ATP2A1O14983 1001 aa20.43■□□□□ 0.86
CLN3-216ENST00000565316 APPP05067 770 aa20.43■□□□□ 0.86
CLN3-216ENST00000565316 RTP1P59025 263 aa20.43■□□□□ 0.86
CLN3-216ENST00000565316 MDM2Q00987 491 aaPredicted RBP20.43■□□□□ 0.86
CLN3-216ENST00000565316 SNX17Q15036 470 aa20.43■□□□□ 0.86
CLN3-216ENST00000565316 LRRC41Q15345 812 aa20.43■□□□□ 0.86
CLN3-216ENST00000565316 ZMYM1Q5SVZ6 1142 aa20.43■□□□□ 0.86
CLN3-216ENST00000565316 SLC39A5Q6ZMH5 540 aa20.43■□□□□ 0.86
CLN3-216ENST00000565316 ZNF444Q8N0Y2 327 aaPredicted RBP20.43■□□□□ 0.86
CLN3-216ENST00000565316 SEC62Q99442 399 aaKnown RBP20.43■□□□□ 0.86
CLN3-216ENST00000565316 MTMR4Q9NYA4 1195 aa20.43■□□□□ 0.86
CLN3-216ENST00000565316 ZNFX1Q9P2E3 1918 aaKnown RBP20.42■□□□□ 0.86
CLN3-216ENST00000565316 PRDM1O75626 825 aa20.42■□□□□ 0.86
CLN3-216ENST00000565316 CEP95Q96GE4 821 aa20.42■□□□□ 0.86
CLN3-216ENST00000565316 NACAP1Q9BZK3 213 aa20.42■□□□□ 0.86
CLN3-216ENST00000565316 PLIN4Q96Q06 1357 aa20.42■□□□□ 0.86
CLN3-216ENST00000565316 COL6A3P12111 3177 aa20.41■□□□□ 0.86
CLN3-216ENST00000565316 FAM47AQ5JRC9 791 aa20.41■□□□□ 0.86
CLN3-216ENST00000565316 C1orf53Q5VUE5 145 aa20.41■□□□□ 0.86
CLN3-216ENST00000565316 DHX30Q7L2E3 1194 aaKnown RBP eCLIP20.41■□□□□ 0.86
CLN3-216ENST00000565316 MSL3Q8N5Y2 521 aaKnown RBP20.41■□□□□ 0.86
CLN3-216ENST00000565316 GMCL1P1Q8NEA9 526 aa20.41■□□□□ 0.86
CLN3-216ENST00000565316 NEDD1Q8NHV4 660 aa20.41■□□□□ 0.86
CLN3-216ENST00000565316 SALL3Q9BXA9 1300 aa20.41■□□□□ 0.86
CLN3-216ENST00000565316 TTLL1O95922 423 aa20.4■□□□□ 0.86
CLN3-216ENST00000565316 ZNF865P0CJ78 1059 aaPredicted RBP20.4■□□□□ 0.86
CLN3-216ENST00000565316 TAL1P17542 331 aaPredicted RBP20.4■□□□□ 0.86
CLN3-216ENST00000565316 MX1P20591 662 aa20.4■□□□□ 0.86
CLN3-216ENST00000565316 ADCYAP1R1P41586 468 aa20.4■□□□□ 0.86
CLN3-216ENST00000565316 SNRNP48Q6IEG0 339 aaKnown RBP20.4■□□□□ 0.86
CLN3-216ENST00000565316 LBHD1Q9BQE6 289 aaPredicted RBP20.4■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms