RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 RRAGCQ9HB90 399 aa8.66□□□□□ -1.02
VPS13D-211ENST00000543710 DDX21Q9NR30 783 aaKnown RBP eCLIP8.66□□□□□ -1.02
VPS13D-211ENST00000543710 BZW2Q9Y6E2 419 aaKnown RBP8.66□□□□□ -1.02
VPS13D-211ENST00000543710 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP8.66□□□□□ -1.02
VPS13D-211ENST00000543710 QRICH2Q9H0J4 1663 aa8.66□□□□□ -1.02
VPS13D-211ENST00000543710 BCRP11274 1271 aa8.65□□□□□ -1.02
VPS13D-211ENST00000543710 GNAT1P11488 350 aa8.65□□□□□ -1.02
VPS13D-211ENST00000543710 HOXC9P31274 260 aa8.65□□□□□ -1.02
VPS13D-211ENST00000543710 HEATR3Q7Z4Q2 680 aa8.65□□□□□ -1.02
VPS13D-211ENST00000543710 SLFN12Q8IYM2 578 aa8.65□□□□□ -1.02
VPS13D-211ENST00000543710 APPBP2Q92624 585 aa8.65□□□□□ -1.02
VPS13D-211ENST00000543710 TESK2Q96S53 571 aa8.65□□□□□ -1.02
VPS13D-211ENST00000543710 PUF60Q9UHX1 559 aaKnown RBP8.65□□□□□ -1.02
VPS13D-211ENST00000543710 CPS1P31327 1500 aa8.65□□□□□ -1.02
VPS13D-211ENST00000543710 P4HA1P13674 534 aa8.65□□□□□ -1.02
VPS13D-211ENST00000543710 HCLS1P14317 486 aaPredicted RBP8.65□□□□□ -1.02
VPS13D-211ENST00000543710 MNAT1P51948 309 aa8.65□□□□□ -1.02
VPS13D-211ENST00000543710 EVCP57679 992 aa8.65□□□□□ -1.02
VPS13D-211ENST00000543710 MKRN3Q13064 507 aaKnown RBP8.65□□□□□ -1.02
VPS13D-211ENST00000543710 ORC2Q13416 577 aaPredicted RBP8.65□□□□□ -1.02
VPS13D-211ENST00000543710 PPP1R7Q15435 360 aa8.65□□□□□ -1.02
VPS13D-211ENST00000543710 CFAP221Q4G0U5 840 aa8.65□□□□□ -1.02
VPS13D-211ENST00000543710 CHADLQ6NUI6 762 aa8.65□□□□□ -1.02
VPS13D-211ENST00000543710 GSTA5Q7RTV2 222 aa8.65□□□□□ -1.02
VPS13D-211ENST00000543710 CCHCR1Q8TD31 782 aa8.65□□□□□ -1.02
VPS13D-211ENST00000543710 PPIL4Q8WUA2 492 aaKnown RBP eCLIP8.65□□□□□ -1.02
VPS13D-211ENST00000543710 DDX17Q92841 729 aaKnown RBP8.65□□□□□ -1.02
VPS13D-211ENST00000543710 MRFAP1L1Q96HT8 127 aa8.65□□□□□ -1.02
VPS13D-211ENST00000543710 HAUS8Q9BT25 410 aa8.65□□□□□ -1.02
VPS13D-211ENST00000543710 TRMT1Q9NXH9 659 aaKnown RBP8.65□□□□□ -1.02
VPS13D-211ENST00000543710 USP19O94966 1318 aa8.65□□□□□ -1.02
VPS13D-211ENST00000543710 WDR17Q8IZU2 1322 aa8.65□□□□□ -1.02
VPS13D-211ENST00000543710 ZMYM6O95789 1325 aa8.65□□□□□ -1.02
VPS13D-211ENST00000543710 DPYSL4O14531 572 aa8.65□□□□□ -1.02
VPS13D-211ENST00000543710 CAPN2P17655 700 aa8.65□□□□□ -1.02
VPS13D-211ENST00000543710 GIMAP6Q6P9H5 292 aa8.65□□□□□ -1.02
VPS13D-211ENST00000543710 YAF2Q8IY57 180 aa8.65□□□□□ -1.02
VPS13D-211ENST00000543710 TRMT44Q8IYL2 757 aaKnown RBP8.65□□□□□ -1.02
VPS13D-211ENST00000543710 MIPOL1Q8TD10 442 aa8.65□□□□□ -1.02
VPS13D-211ENST00000543710 DNAJC25Q9H1X3 360 aa8.65□□□□□ -1.02
VPS13D-211ENST00000543710 LMTK2Q8IWU2 1503 aa8.65□□□□□ -1.03
VPS13D-211ENST00000543710 PXDNLA1KZ92 1463 aa8.65□□□□□ -1.03
VPS13D-211ENST00000543710 SPATA31E1Q6ZUB1 1445 aa8.65□□□□□ -1.03
VPS13D-211ENST00000543710 EFCAB8A8MWE9 144 aa8.65□□□□□ -1.03
VPS13D-211ENST00000543710 C21orf2O43822 256 aa8.65□□□□□ -1.03
VPS13D-211ENST00000543710 EVI5O60447 810 aa8.65□□□□□ -1.03
VPS13D-211ENST00000543710 SEC24BO95487 1268 aa8.65□□□□□ -1.03
VPS13D-211ENST00000543710 SLC8A3P57103 927 aa8.65□□□□□ -1.03
VPS13D-211ENST00000543710 UTP14CQ5TAP6 766 aaKnown RBP8.65□□□□□ -1.03
VPS13D-211ENST00000543710 TRIM58Q8NG06 486 aa8.65□□□□□ -1.03
VPS13D-211ENST00000543710 CHURC1Q8WUH1 139 aa8.65□□□□□ -1.03
VPS13D-211ENST00000543710 KDM4FA0A1W2PPD8 638 aa8.65□□□□□ -1.03
VPS13D-211ENST00000543710 PDE8AO60658 829 aa8.65□□□□□ -1.03
VPS13D-211ENST00000543710 IL13P35225 146 aa8.65□□□□□ -1.03
VPS13D-211ENST00000543710 UBE4AQ14139 1066 aa8.65□□□□□ -1.03
VPS13D-211ENST00000543710 TNNI3KQ59H18 835 aa8.65□□□□□ -1.03
VPS13D-211ENST00000543710 ZNF569Q5MCW4 686 aa8.65□□□□□ -1.03
VPS13D-211ENST00000543710 TCERG1LQ5VWI1 586 aa8.65□□□□□ -1.03
VPS13D-211ENST00000543710 Q9H521 79 aa8.65□□□□□ -1.03
VPS13D-211ENST00000543710 CTNND2Q9UQB3 1225 aa8.65□□□□□ -1.03
VPS13D-211ENST00000543710 FPGT-TNNI3KV9GXZ4 949 aa8.65□□□□□ -1.03
VPS13D-211ENST00000543710 IGSF1Q8N6C5 1336 aa8.64□□□□□ -1.03
VPS13D-211ENST00000543710 TRAPPC10P48553 1259 aa8.64□□□□□ -1.03
VPS13D-211ENST00000543710 MAPK8IP2Q13387 824 aaPredicted RBP8.64□□□□□ -1.03
VPS13D-211ENST00000543710 PPP2R5DQ14738 602 aa8.64□□□□□ -1.03
VPS13D-211ENST00000543710 USPL1Q5W0Q7 1092 aa8.64□□□□□ -1.03
VPS13D-211ENST00000543710 MICU3Q86XE3 530 aa8.64□□□□□ -1.03
VPS13D-211ENST00000543710 TRIM42Q8IWZ5 723 aa8.64□□□□□ -1.03
VPS13D-211ENST00000543710 SEC62Q99442 399 aaKnown RBP8.64□□□□□ -1.03
VPS13D-211ENST00000543710 PTCH1Q13635 1447 aa8.64□□□□□ -1.03
VPS13D-211ENST00000543710 ABCC12Q96J65 1359 aa8.64□□□□□ -1.03
VPS13D-211ENST00000543710 PPP6R2O75170 966 aa8.64□□□□□ -1.03
VPS13D-211ENST00000543710 FLOT1O75955 427 aa8.64□□□□□ -1.03
VPS13D-211ENST00000543710 ARRDC4Q8NCT1 418 aa8.64□□□□□ -1.03
VPS13D-211ENST00000543710 FAM71BQ8TC56 605 aa8.64□□□□□ -1.03
VPS13D-211ENST00000543710 HVCN1Q96D96 273 aa8.64□□□□□ -1.03
VPS13D-211ENST00000543710 WDR19Q8NEZ3 1342 aa8.64□□□□□ -1.03
VPS13D-211ENST00000543710 PHACTR2O75167 634 aa8.64□□□□□ -1.03
VPS13D-211ENST00000543710 USP17L8P0C7I0 530 aa8.64□□□□□ -1.03
VPS13D-211ENST00000543710 LIG1P18858 919 aa8.64□□□□□ -1.03
VPS13D-211ENST00000543710 ELF1P32519 619 aa8.64□□□□□ -1.03
VPS13D-211ENST00000543710 C8orf74Q6P047 294 aa8.64□□□□□ -1.03
VPS13D-211ENST00000543710 COPS6Q7L5N1 327 aa8.64□□□□□ -1.03
VPS13D-211ENST00000543710 SRRM1Q8IYB3 904 aaKnown RBP8.64□□□□□ -1.03
VPS13D-211ENST00000543710 NOC4LQ9BVI4 516 aaKnown RBP8.64□□□□□ -1.03
VPS13D-211ENST00000543710 LARSQ9P2J5 1176 aaKnown RBP8.64□□□□□ -1.03
VPS13D-211ENST00000543710 POLKQ9UBT6 870 aa8.64□□□□□ -1.03
VPS13D-211ENST00000543710 A0A1W2PQ27 194 aa8.64□□□□□ -1.03
VPS13D-211ENST00000543710 A0A1W2PQ64 194 aa8.64□□□□□ -1.03
VPS13D-211ENST00000543710 A0A1W2PQD8 194 aa8.64□□□□□ -1.03
VPS13D-211ENST00000543710 RPS6KA4O75676 772 aa8.64□□□□□ -1.03
VPS13D-211ENST00000543710 ERCC5P28715 1186 aaPredicted RBP8.64□□□□□ -1.03
VPS13D-211ENST00000543710 MXRA7P84157 204 aa8.64□□□□□ -1.03
VPS13D-211ENST00000543710 LMNB2Q03252 620 aa8.64□□□□□ -1.03
VPS13D-211ENST00000543710 DNM1Q05193 864 aaKnown RBP8.64□□□□□ -1.03
VPS13D-211ENST00000543710 FAM182BQ5T319 152 aa8.64□□□□□ -1.03
VPS13D-211ENST00000543710 NLRX1Q86UT6 975 aa8.64□□□□□ -1.03
VPS13D-211ENST00000543710 ZKSCAN3Q9BRR0 538 aa8.64□□□□□ -1.03
VPS13D-211ENST00000543710 VPS18Q9P253 973 aa8.64□□□□□ -1.03
VPS13D-211ENST00000543710 SNX14Q9Y5W7 946 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 547 ms