RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 BDNFP23560 247 aa5.36□□□□□ -1.55
VPS41-212ENST00000482217 MYBPC2Q14324 1141 aa5.36□□□□□ -1.55
VPS41-212ENST00000482217 PPP2R5EQ16537 467 aa5.36□□□□□ -1.55
VPS41-212ENST00000482217 RUFY4Q6ZNE9 571 aa5.36□□□□□ -1.55
VPS41-212ENST00000482217 TTC6Q86TZ1 520 aa5.36□□□□□ -1.55
VPS41-212ENST00000482217 DTX1Q86Y01 620 aa5.36□□□□□ -1.55
VPS41-212ENST00000482217 FMNL3Q8IVF7 1028 aa5.36□□□□□ -1.55
VPS41-212ENST00000482217 FBXL6Q8N531 539 aa5.36□□□□□ -1.55
VPS41-212ENST00000482217 RPS6KC1Q96S38 1066 aa5.36□□□□□ -1.55
VPS41-212ENST00000482217 DPH2Q9BQC3 489 aaPredicted RBP5.36□□□□□ -1.55
VPS41-212ENST00000482217 TRIM55Q9BYV6 548 aa5.36□□□□□ -1.55
VPS41-212ENST00000482217 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP5.36□□□□□ -1.55
VPS41-212ENST00000482217 C1GALT1Q9NS00 363 aa5.36□□□□□ -1.55
VPS41-212ENST00000482217 IFT57Q9NWB7 429 aa5.36□□□□□ -1.55
VPS41-212ENST00000482217 SIRPGQ9P1W8 387 aa5.36□□□□□ -1.55
VPS41-212ENST00000482217 MRPL42Q9Y6G3 142 aaKnown RBP5.36□□□□□ -1.55
VPS41-212ENST00000482217 EXOC5O00471 708 aa5.35□□□□□ -1.55
VPS41-212ENST00000482217 DYNC1LI2O43237 492 aaPredicted RBP5.35□□□□□ -1.55
VPS41-212ENST00000482217 GBP1P32455 592 aa5.35□□□□□ -1.55
VPS41-212ENST00000482217 FXNQ16595 210 aa5.35□□□□□ -1.55
VPS41-212ENST00000482217 DUSP27Q5VZP5 1158 aa5.35□□□□□ -1.55
VPS41-212ENST00000482217 LETMD1Q6P1Q0 360 aa5.35□□□□□ -1.55
VPS41-212ENST00000482217 UNC5AQ6ZN44 842 aa5.35□□□□□ -1.55
VPS41-212ENST00000482217 FILIP1Q7Z7B0 1213 aa5.35□□□□□ -1.55
VPS41-212ENST00000482217 HNRNPLLQ8WVV9 542 aaKnown RBP5.35□□□□□ -1.55
VPS41-212ENST00000482217 MKL1Q969V6 931 aa5.35□□□□□ -1.55
VPS41-212ENST00000482217 DHRS1Q96LJ7 313 aa5.35□□□□□ -1.55
VPS41-212ENST00000482217 SLC9A7Q96T83 725 aa5.35□□□□□ -1.55
VPS41-212ENST00000482217 KIF2CQ99661 725 aa5.35□□□□□ -1.55
VPS41-212ENST00000482217 PHAXQ9H814 394 aaKnown RBP5.35□□□□□ -1.55
VPS41-212ENST00000482217 DDX56Q9NY93 547 aaKnown RBP5.35□□□□□ -1.55
VPS41-212ENST00000482217 NAP1L2Q9ULW6 460 aaPredicted RBP5.35□□□□□ -1.55
VPS41-212ENST00000482217 CEP131Q9UPN4 1083 aa5.35□□□□□ -1.55
VPS41-212ENST00000482217 CCDC189A1A4V9 331 aa5.34□□□□□ -1.55
VPS41-212ENST00000482217 HMGB1P1B2RPK0 211 aaPredicted RBP5.34□□□□□ -1.55
VPS41-212ENST00000482217 SLITRK5O94991 958 aa5.34□□□□□ -1.55
VPS41-212ENST00000482217 MED26O95402 600 aa5.34□□□□□ -1.55
VPS41-212ENST00000482217 PDE6BP35913 854 aa5.34□□□□□ -1.55
VPS41-212ENST00000482217 ETV3P41162 512 aa5.34□□□□□ -1.55
VPS41-212ENST00000482217 BIRC2Q13490 618 aa5.34□□□□□ -1.55
VPS41-212ENST00000482217 SERINC3Q13530 473 aa5.34□□□□□ -1.55
VPS41-212ENST00000482217 BBS9Q3SYG4 887 aa5.34□□□□□ -1.55
VPS41-212ENST00000482217 RINLQ6ZS11 566 aa5.34□□□□□ -1.55
VPS41-212ENST00000482217 PPP1R13LQ8WUF5 828 aa5.34□□□□□ -1.55
VPS41-212ENST00000482217 GATA6Q92908 595 aa5.34□□□□□ -1.55
VPS41-212ENST00000482217 COX4I2Q96KJ9 171 aa5.34□□□□□ -1.55
VPS41-212ENST00000482217 MIPEPQ99797 713 aa5.34□□□□□ -1.55
VPS41-212ENST00000482217 OSBPL2Q9H1P3 480 aa5.34□□□□□ -1.55
VPS41-212ENST00000482217 TNKS2Q9H2K2 1166 aa5.34□□□□□ -1.55
VPS41-212ENST00000482217 LGR6Q9HBX8 967 aa5.34□□□□□ -1.55
VPS41-212ENST00000482217 CYP26A1O43174 497 aa5.33□□□□□ -1.56
VPS41-212ENST00000482217 UBOX5O94941 541 aa5.33□□□□□ -1.56
VPS41-212ENST00000482217 WNT11O96014 354 aa5.33□□□□□ -1.56
VPS41-212ENST00000482217 PTMAP06454 111 aaKnown RBP5.33□□□□□ -1.56
VPS41-212ENST00000482217 CYP7A1P22680 504 aa5.33□□□□□ -1.56
VPS41-212ENST00000482217 POLR2BP30876 1174 aaKnown RBP5.33□□□□□ -1.56
VPS41-212ENST00000482217 ADMP35318 185 aa5.33□□□□□ -1.56
VPS41-212ENST00000482217 CHMP4BP1P59074 171 aa5.33□□□□□ -1.56
VPS41-212ENST00000482217 CDK5R2Q13319 367 aa5.33□□□□□ -1.56
VPS41-212ENST00000482217 ZYXQ15942 572 aaKnown RBP5.33□□□□□ -1.56
VPS41-212ENST00000482217 MSMPQ1L6U9 139 aa5.33□□□□□ -1.56
VPS41-212ENST00000482217 CYP27C1Q4G0S4 372 aa5.33□□□□□ -1.56
VPS41-212ENST00000482217 OGFOD3Q6PK18 319 aa5.33□□□□□ -1.56
VPS41-212ENST00000482217 LRP10Q7Z4F1 713 aa5.33□□□□□ -1.56
VPS41-212ENST00000482217 TOP6BLQ8N6T0 577 aa5.33□□□□□ -1.56
VPS41-212ENST00000482217 DNAJB8Q8NHS0 232 aa5.33□□□□□ -1.56
VPS41-212ENST00000482217 BAHD1Q8TBE0 780 aaPredicted RBP5.33□□□□□ -1.56
VPS41-212ENST00000482217 XAGE3Q8WTP9 111 aa5.33□□□□□ -1.56
VPS41-212ENST00000482217 SMARCC1Q92922 1105 aaPredicted RBP5.33□□□□□ -1.56
VPS41-212ENST00000482217 DUSP23Q9BVJ7 150 aa5.33□□□□□ -1.56
VPS41-212ENST00000482217 SUCOQ9UBS9 1254 aaKnown RBP5.33□□□□□ -1.56
VPS41-212ENST00000482217 ZNF214Q9UL59 606 aaPredicted RBP5.33□□□□□ -1.56
VPS41-212ENST00000482217 LTBP3Q9NS15 1303 aa5.32□□□□□ -1.56
VPS41-212ENST00000482217 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.32□□□□□ -1.56
VPS41-212ENST00000482217 CLEC3AO75596 197 aa5.32□□□□□ -1.56
VPS41-212ENST00000482217 EOMESO95936 686 aa5.32□□□□□ -1.56
VPS41-212ENST00000482217 PRNPP04156 253 aa5.32□□□□□ -1.56
VPS41-212ENST00000482217 S100BP04271 92 aaPredicted RBP5.32□□□□□ -1.56
VPS41-212ENST00000482217 HSD3B2P26439 372 aa5.32□□□□□ -1.56
VPS41-212ENST00000482217 PMS1P54277 932 aaKnown RBP5.32□□□□□ -1.56
VPS41-212ENST00000482217 RNF4P78317 190 aa5.32□□□□□ -1.56
VPS41-212ENST00000482217 NCAPHQ15003 741 aa5.32□□□□□ -1.56
VPS41-212ENST00000482217 NFE2L2Q16236 605 aa5.32□□□□□ -1.56
VPS41-212ENST00000482217 DDR2Q16832 855 aa5.32□□□□□ -1.56
VPS41-212ENST00000482217 LARP1BQ659C4 914 aaKnown RBP5.32□□□□□ -1.56
VPS41-212ENST00000482217 TMEM192Q8IY95 271 aa5.32□□□□□ -1.56
VPS41-212ENST00000482217 ZCRB1Q8TBF4 217 aaKnown RBP5.32□□□□□ -1.56
VPS41-212ENST00000482217 SLC6A18Q96N87 628 aa5.32□□□□□ -1.56
VPS41-212ENST00000482217 ASPNQ9BXN1 380 aa5.32□□□□□ -1.56
VPS41-212ENST00000482217 KRTAP9-2Q9BYQ4 174 aa5.32□□□□□ -1.56
VPS41-212ENST00000482217 CCDC113Q9H0I3 377 aa5.32□□□□□ -1.56
VPS41-212ENST00000482217 SPC25Q9HBM1 224 aa5.32□□□□□ -1.56
VPS41-212ENST00000482217 NRBP1Q9UHY1 535 aa5.32□□□□□ -1.56
VPS41-212ENST00000482217 MSRB2Q9Y3D2 182 aa5.32□□□□□ -1.56
VPS41-212ENST00000482217 COMMD10Q9Y6G5 202 aa5.32□□□□□ -1.56
VPS41-212ENST00000482217 CLSPNQ9HAW4 1339 aa5.31□□□□□ -1.56
VPS41-212ENST00000482217 CFAP69A5D8W1 941 aa5.31□□□□□ -1.56
VPS41-212ENST00000482217 FAM170BA6NMN3 283 aa5.31□□□□□ -1.56
VPS41-212ENST00000482217 ZNF500O60304 480 aaPredicted RBP5.31□□□□□ -1.56
VPS41-212ENST00000482217 FAM87AP0C7U9 286 aa5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms