RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 PRPF38AQ8NAV1 312 aaKnown RBP12.56□□□□□ -0.4
UBR4-208ENST00000459947 NBPF3Q9H094 633 aa12.56□□□□□ -0.4
UBR4-208ENST00000459947 PPP1R9AQ9ULJ8 1098 aa12.56□□□□□ -0.4
UBR4-208ENST00000459947 A0A0G2JMZ2 1700 aa12.55□□□□□ -0.4
UBR4-208ENST00000459947 SLC1A4P43007 532 aa12.55□□□□□ -0.4
UBR4-208ENST00000459947 ASPRV1Q53RT3 343 aa12.55□□□□□ -0.4
UBR4-208ENST00000459947 FBXO46Q6PJ61 603 aaPredicted RBP12.55□□□□□ -0.4
UBR4-208ENST00000459947 SOCS4Q8WXH5 440 aa12.55□□□□□ -0.4
UBR4-208ENST00000459947 B4E1Z4 1266 aa12.55□□□□□ -0.4
UBR4-208ENST00000459947 KCNB2Q92953 911 aa12.55□□□□□ -0.4
UBR4-208ENST00000459947 P2RX7Q99572 595 aaKnown RBP12.55□□□□□ -0.4
UBR4-208ENST00000459947 SLC5A4Q9NY91 659 aa12.55□□□□□ -0.4
UBR4-208ENST00000459947 CPA4Q9UI42 421 aa12.55□□□□□ -0.4
UBR4-208ENST00000459947 MAP3K14Q99558 947 aa12.55□□□□□ -0.4
UBR4-208ENST00000459947 CALM1P0DP23 149 aa12.54□□□□□ -0.4
UBR4-208ENST00000459947 CALM2P0DP24 149 aa12.54□□□□□ -0.4
UBR4-208ENST00000459947 CALM3P0DP25 149 aa12.54□□□□□ -0.4
UBR4-208ENST00000459947 SHROOM1Q2M3G4 852 aaPredicted RBP12.54□□□□□ -0.4
UBR4-208ENST00000459947 IFIT1BQ5T764 474 aaKnown RBP12.54□□□□□ -0.4
UBR4-208ENST00000459947 MROH8Q9H579 483 aa12.54□□□□□ -0.4
UBR4-208ENST00000459947 SPDYE16A6NNV3 312 aaPredicted RBP12.54□□□□□ -0.4
UBR4-208ENST00000459947 CYP2C8P10632 490 aa12.54□□□□□ -0.4
UBR4-208ENST00000459947 CCDC96Q2M329 555 aa12.54□□□□□ -0.4
UBR4-208ENST00000459947 TMEM47Q9BQJ4 181 aa12.54□□□□□ -0.4
UBR4-208ENST00000459947 IL25Q9H293 177 aa12.54□□□□□ -0.4
UBR4-208ENST00000459947 FBXO40Q9UH90 709 aa12.54□□□□□ -0.4
UBR4-208ENST00000459947 STAT2P52630 851 aa12.54□□□□□ -0.4
UBR4-208ENST00000459947 ERVK-9P63128 1117 aa12.54□□□□□ -0.4
UBR4-208ENST00000459947 ERVK-24P63145 666 aa12.54□□□□□ -0.4
UBR4-208ENST00000459947 WTAPQ15007 396 aa12.54□□□□□ -0.4
UBR4-208ENST00000459947 IL17RBQ9NRM6 502 aa12.54□□□□□ -0.4
UBR4-208ENST00000459947 TNKSO95271 1327 aa12.53□□□□□ -0.4
UBR4-208ENST00000459947 IFIT3O14879 490 aaKnown RBP12.53□□□□□ -0.4
UBR4-208ENST00000459947 ATP2A1O14983 1001 aa12.53□□□□□ -0.4
UBR4-208ENST00000459947 FMNL1O95466 1100 aaPredicted RBP12.53□□□□□ -0.4
UBR4-208ENST00000459947 GNAQP50148 359 aa12.53□□□□□ -0.4
UBR4-208ENST00000459947 FAM83BQ5T0W9 1011 aa12.53□□□□□ -0.4
UBR4-208ENST00000459947 BTNL9Q6UXG8 535 aa12.53□□□□□ -0.4
UBR4-208ENST00000459947 LRRC47Q8N1G4 583 aaKnown RBP12.53□□□□□ -0.4
UBR4-208ENST00000459947 CD99L2Q8TCZ2 262 aa12.53□□□□□ -0.4
UBR4-208ENST00000459947 ADAMTS5Q9UNA0 930 aa12.53□□□□□ -0.4
UBR4-208ENST00000459947 IVNS1ABPQ9Y6Y0 642 aa12.53□□□□□ -0.4
UBR4-208ENST00000459947 SMIM22K7EJ46 135 aa12.53□□□□□ -0.4
UBR4-208ENST00000459947 TNPO2O14787 897 aaKnown RBP12.53□□□□□ -0.4
UBR4-208ENST00000459947 RAD21O60216 631 aa12.53□□□□□ -0.4
UBR4-208ENST00000459947 RCAN1P53805 252 aa12.53□□□□□ -0.4
UBR4-208ENST00000459947 SYNE3Q6ZMZ3 975 aa12.53□□□□□ -0.4
UBR4-208ENST00000459947 MB21D2Q8IYB1 491 aaPredicted RBP12.53□□□□□ -0.4
UBR4-208ENST00000459947 TSKSQ9UJT2 592 aa12.53□□□□□ -0.4
UBR4-208ENST00000459947 STRNO43815 780 aa12.53□□□□□ -0.4
UBR4-208ENST00000459947 DDAH1O94760 285 aa12.53□□□□□ -0.4
UBR4-208ENST00000459947 HSPA4P34932 840 aa12.53□□□□□ -0.4
UBR4-208ENST00000459947 ANAPC15P60006 121 aa12.53□□□□□ -0.4
UBR4-208ENST00000459947 IRF5Q13568 498 aa12.53□□□□□ -0.4
UBR4-208ENST00000459947 DGKZQ13574 1117 aa12.53□□□□□ -0.4
UBR4-208ENST00000459947 CATIPQ7Z7H3 387 aa12.53□□□□□ -0.4
UBR4-208ENST00000459947 ABRAQ8N0Z2 381 aa12.53□□□□□ -0.4
UBR4-208ENST00000459947 ANKRD13CQ8N6S4 541 aa12.53□□□□□ -0.4
UBR4-208ENST00000459947 NEK1Q96PY6 1258 aa12.53□□□□□ -0.4
UBR4-208ENST00000459947 LZTS2Q9BRK4 669 aa12.53□□□□□ -0.4
UBR4-208ENST00000459947 ZSWIM5Q9P217 1185 aa12.53□□□□□ -0.4
UBR4-208ENST00000459947 KIF5BP33176 963 aa12.52□□□□□ -0.4
UBR4-208ENST00000459947 PSMC4P43686 418 aa12.52□□□□□ -0.4
UBR4-208ENST00000459947 IKQ13123 557 aaPredicted RBP12.52□□□□□ -0.4
UBR4-208ENST00000459947 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.52□□□□□ -0.46e-6■□□□□ 8.9
UBR4-208ENST00000459947 PNMA1Q8ND90 353 aa12.52□□□□□ -0.4
UBR4-208ENST00000459947 SRRDQ9UH36 339 aa12.52□□□□□ -0.4
UBR4-208ENST00000459947 ISY1Q9ULR0 285 aaKnown RBP12.52□□□□□ -0.4
UBR4-208ENST00000459947 TRIM17Q9Y577 477 aa12.52□□□□□ -0.4
UBR4-208ENST00000459947 LIFRP42702 1097 aa12.52□□□□□ -0.41
UBR4-208ENST00000459947 TMEM67Q5HYA8 995 aa12.52□□□□□ -0.41
UBR4-208ENST00000459947 ZNF236Q9UL36 1845 aa12.52□□□□□ -0.41
UBR4-208ENST00000459947 SLC15A5A6NIM6 579 aa12.52□□□□□ -0.41
UBR4-208ENST00000459947 SNHG28P0DPA3 235 aa12.52□□□□□ -0.41
UBR4-208ENST00000459947 PPP2R5BQ15173 497 aa12.52□□□□□ -0.41
UBR4-208ENST00000459947 OTOP1Q7RTM1 612 aa12.52□□□□□ -0.41
UBR4-208ENST00000459947 PLEKHH3Q7Z736 793 aa12.52□□□□□ -0.41
UBR4-208ENST00000459947 RIOX2Q8IUF8 465 aa12.52□□□□□ -0.41
UBR4-208ENST00000459947 CLEC10AQ8IUN9 316 aa12.52□□□□□ -0.41
UBR4-208ENST00000459947 PAGR1Q9BTK6 254 aa12.52□□□□□ -0.41
UBR4-208ENST00000459947 MGAMO43451 1857 aa12.52□□□□□ -0.41
UBR4-208ENST00000459947 GOLGB1Q14789 3259 aaKnown RBP12.52□□□□□ -0.41
UBR4-208ENST00000459947 TM6SF1Q9BZW5 370 aa12.51□□□□□ -0.41
UBR4-208ENST00000459947 PARP1P09874 1014 aaKnown RBP12.51□□□□□ -0.41
UBR4-208ENST00000459947 TNS4Q8IZW8 715 aa12.51□□□□□ -0.41
UBR4-208ENST00000459947 SPICE1Q8N0Z3 855 aa12.51□□□□□ -0.41
UBR4-208ENST00000459947 ENAHQ8N8S7 591 aaPredicted RBP12.51□□□□□ -0.41
UBR4-208ENST00000459947 SLAIN1Q8ND83 568 aa12.51□□□□□ -0.41
UBR4-208ENST00000459947 CHST13Q8NET6 341 aa12.51□□□□□ -0.41
UBR4-208ENST00000459947 TEX13BQ9BXU2 312 aa12.51□□□□□ -0.41
UBR4-208ENST00000459947 RBPJLQ9UBG7 517 aa12.51□□□□□ -0.41
UBR4-208ENST00000459947 PARP14Q460N5 1801 aa12.51□□□□□ -0.41
UBR4-208ENST00000459947 CASP8AP2Q9UKL3 1982 aa12.51□□□□□ -0.41
UBR4-208ENST00000459947 CCDC69A6NI79 296 aa12.51□□□□□ -0.41
UBR4-208ENST00000459947 PRC1O43663 620 aa12.51□□□□□ -0.41
UBR4-208ENST00000459947 SMARCA1P28370 1054 aa12.51□□□□□ -0.41
UBR4-208ENST00000459947 ZNF543Q08ER8 600 aa12.51□□□□□ -0.41
UBR4-208ENST00000459947 SEC23AQ15436 765 aa12.51□□□□□ -0.41
UBR4-208ENST00000459947 DHX32Q7L7V1 743 aaKnown RBP12.51□□□□□ -0.41
UBR4-208ENST00000459947 NBPF11Q86T75 865 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms