RNA–Protein interactions for RNA: ENST00000441089.1

PTPN4-206, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 671 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-206ENST00000441089 SLC9A9Q8IVB4 645 aa6.18□□□□□ -1.42
PTPN4-206ENST00000441089 RUNDC1Q96C34 613 aa6.18□□□□□ -1.42
PTPN4-206ENST00000441089 SHISA4Q96DD7 197 aa6.18□□□□□ -1.42
PTPN4-206ENST00000441089 PHACTR3Q96KR7 559 aa6.18□□□□□ -1.42
PTPN4-206ENST00000441089 GDF15Q99988 308 aa6.18□□□□□ -1.42
PTPN4-206ENST00000441089 KRTAP4-7Q9BYR0 210 aa6.18□□□□□ -1.42
PTPN4-206ENST00000441089 RAPGEFL1Q9UHV5 662 aa6.18□□□□□ -1.42
PTPN4-206ENST00000441089 ASTN2O75129 1339 aaPredicted RBP6.18□□□□□ -1.42
PTPN4-206ENST00000441089 SPTBN4Q9H254 2564 aa6.17□□□□□ -1.42
PTPN4-206ENST00000441089 LRRC37AA6NMS7 1700 aa6.17□□□□□ -1.42
PTPN4-206ENST00000441089 LAMB2P55268 1798 aa6.17□□□□□ -1.42
PTPN4-206ENST00000441089 TMEM265A0A087WTH1 108 aa6.17□□□□□ -1.42
PTPN4-206ENST00000441089 UNCXA6NJT0 531 aa6.17□□□□□ -1.42
PTPN4-206ENST00000441089 IGF2BP3O00425 579 aaKnown RBP eCLIP6.17□□□□□ -1.42
PTPN4-206ENST00000441089 LILRB5O75023 590 aa6.17□□□□□ -1.42
PTPN4-206ENST00000441089 WDHD1O75717 1129 aaPredicted RBP6.17□□□□□ -1.42
PTPN4-206ENST00000441089 GJB1P08034 283 aa6.17□□□□□ -1.42
PTPN4-206ENST00000441089 VIL1P09327 827 aaKnown RBP6.17□□□□□ -1.42
PTPN4-206ENST00000441089 SKIP12755 728 aa6.17□□□□□ -1.42
PTPN4-206ENST00000441089 PRKAR2BP31323 418 aa6.17□□□□□ -1.42
PTPN4-206ENST00000441089 GJA8P48165 433 aa6.17□□□□□ -1.42
PTPN4-206ENST00000441089 AFF1P51825 1210 aaKnown RBP6.17□□□□□ -1.42
PTPN4-206ENST00000441089 ZNF280AP59817 542 aaPredicted RBP6.17□□□□□ -1.42
PTPN4-206ENST00000441089 PLAURQ03405 335 aa6.17□□□□□ -1.42
PTPN4-206ENST00000441089 PTPN12Q05209 780 aaKnown RBP6.17□□□□□ -1.42
PTPN4-206ENST00000441089 TYRO3Q06418 890 aa6.17□□□□□ -1.42
PTPN4-206ENST00000441089 KIF22Q14807 665 aa6.17□□□□□ -1.42
PTPN4-206ENST00000441089 LDLRAD1Q5T700 205 aa6.17□□□□□ -1.42
PTPN4-206ENST00000441089 TDHQ8IZJ6 230 aa6.17□□□□□ -1.42
PTPN4-206ENST00000441089 FMR1NBQ8N0W7 255 aaPredicted RBP6.17□□□□□ -1.42
PTPN4-206ENST00000441089 AGBL3Q8NEM8 1001 aa6.17□□□□□ -1.42
PTPN4-206ENST00000441089 SH3TC2Q8TF17 1288 aa6.17□□□□□ -1.42
PTPN4-206ENST00000441089 JPH1Q9HDC5 661 aaPredicted RBP6.17□□□□□ -1.42
PTPN4-206ENST00000441089 BRD7Q9NPI1 651 aa6.17□□□□□ -1.42
PTPN4-206ENST00000441089 RRP7AQ9Y3A4 280 aaKnown RBP6.17□□□□□ -1.42
PTPN4-206ENST00000441089 ABCC4O15439 1325 aa6.17□□□□□ -1.42
PTPN4-206ENST00000441089 ZBED9Q6R2W3 1325 aa6.17□□□□□ -1.42
PTPN4-206ENST00000441089 ZNF521Q96K83 1311 aa6.17□□□□□ -1.42
PTPN4-206ENST00000441089 ERVV-1B6SEH8 477 aa6.16□□□□□ -1.42
PTPN4-206ENST00000441089 ECE2O60344 883 aa6.16□□□□□ -1.42
PTPN4-206ENST00000441089 FARP2O94887 1054 aaPredicted RBP6.16□□□□□ -1.42
PTPN4-206ENST00000441089 MAP3K12Q12852 859 aa6.16□□□□□ -1.42
PTPN4-206ENST00000441089 HLFQ16534 295 aa6.16□□□□□ -1.42
PTPN4-206ENST00000441089 LCE1DQ5T752 114 aa6.16□□□□□ -1.42
PTPN4-206ENST00000441089 SLC51AQ86UW1 340 aa6.16□□□□□ -1.42
PTPN4-206ENST00000441089 DMRTC2Q8IXT2 367 aaPredicted RBP6.16□□□□□ -1.42
PTPN4-206ENST00000441089 BHMTQ93088 406 aa6.16□□□□□ -1.42
PTPN4-206ENST00000441089 MEGF10Q96KG7 1140 aa6.16□□□□□ -1.42
PTPN4-206ENST00000441089 DBNDD1Q9H9R9 158 aa6.16□□□□□ -1.42
PTPN4-206ENST00000441089 SLC6A14Q9UN76 642 aa6.16□□□□□ -1.42
PTPN4-206ENST00000441089 NOD1Q9Y239 953 aa6.16□□□□□ -1.42
PTPN4-206ENST00000441089 IRS2Q9Y4H2 1338 aa6.16□□□□□ -1.42
PTPN4-206ENST00000441089 DUOX1Q9NRD9 1551 aa6.15□□□□□ -1.42
PTPN4-206ENST00000441089 POM121CA8CG34 1229 aa6.15□□□□□ -1.42
PTPN4-206ENST00000441089 USP17L5A8MUK1 530 aa6.15□□□□□ -1.42
PTPN4-206ENST00000441089 SNRPA1P09661 255 aaKnown RBP6.15□□□□□ -1.42
PTPN4-206ENST00000441089 NOS3P29474 1203 aa6.15□□□□□ -1.42
PTPN4-206ENST00000441089 TMPOP42166 694 aaKnown RBP6.15□□□□□ -1.42
PTPN4-206ENST00000441089 PIP4K2AP48426 406 aaPredicted RBP6.15□□□□□ -1.42
PTPN4-206ENST00000441089 TBC1D8BQ0IIM8 1120 aa6.15□□□□□ -1.42
PTPN4-206ENST00000441089 NCOA4Q13772 614 aa6.15□□□□□ -1.42
PTPN4-206ENST00000441089 DDX46Q7L014 1031 aaKnown RBP6.15□□□□□ -1.42
PTPN4-206ENST00000441089 PPP1R42Q7Z4L9 355 aa6.15□□□□□ -1.42
PTPN4-206ENST00000441089 MAFAQ8NHW3 353 aaPredicted RBP6.15□□□□□ -1.42
PTPN4-206ENST00000441089 RHPN1Q8TCX5 695 aa6.15□□□□□ -1.42
PTPN4-206ENST00000441089 ADAMTS19Q8TE59 1207 aa6.15□□□□□ -1.42
PTPN4-206ENST00000441089 GUCD1Q96NT3 240 aa6.15□□□□□ -1.42
PTPN4-206ENST00000441089 EYA3Q99504 573 aa6.15□□□□□ -1.42
PTPN4-206ENST00000441089 ZFYVE28Q9HCC9 887 aa6.15□□□□□ -1.42
PTPN4-206ENST00000441089 MYOZ2Q9NPC6 264 aa6.15□□□□□ -1.42
PTPN4-206ENST00000441089 RNF112Q9ULX5 631 aa6.15□□□□□ -1.42
PTPN4-206ENST00000441089 ANGEL1Q9UNK9 670 aaKnown RBP6.15□□□□□ -1.42
PTPN4-206ENST00000441089 ZNF232Q9UNY5 417 aa6.15□□□□□ -1.42
PTPN4-206ENST00000441089 USP16Q9Y5T5 823 aa6.15□□□□□ -1.42
PTPN4-206ENST00000441089 RTL9Q8NET4 1388 aa6.15□□□□□ -1.43
PTPN4-206ENST00000441089 SFI1A8K8P3 1242 aa6.14□□□□□ -1.43
PTPN4-206ENST00000441089 PPP1R12BO60237 982 aaPredicted RBP6.14□□□□□ -1.43
PTPN4-206ENST00000441089 UBXN2AP68543 259 aa6.14□□□□□ -1.43
PTPN4-206ENST00000441089 GTF2IP78347 998 aa6.14□□□□□ -1.43
PTPN4-206ENST00000441089 NFE2L2Q16236 605 aa6.14□□□□□ -1.43
PTPN4-206ENST00000441089 MTHFSDQ2M296 383 aaKnown RBP6.14□□□□□ -1.43
PTPN4-206ENST00000441089 PARP10Q53GL7 1025 aa6.14□□□□□ -1.43
PTPN4-206ENST00000441089 PRAMEF18Q5VWM3 479 aa6.14□□□□□ -1.43
PTPN4-206ENST00000441089 PLEKHM2Q8IWE5 1019 aa6.14□□□□□ -1.43
PTPN4-206ENST00000441089 WNK4Q96J92 1243 aa6.14□□□□□ -1.43
PTPN4-206ENST00000441089 CEP63Q96MT8 703 aa6.14□□□□□ -1.43
PTPN4-206ENST00000441089 RNF208Q9H0X6 261 aa6.14□□□□□ -1.43
PTPN4-206ENST00000441089 IGFLR1Q9H665 355 aa6.14□□□□□ -1.43
PTPN4-206ENST00000441089 KIAA1024Q9UPX6 916 aa6.14□□□□□ -1.43
PTPN4-206ENST00000441089 HCN4Q9Y3Q4 1203 aa6.14□□□□□ -1.43
PTPN4-206ENST00000441089 CDH23Q9H251 3354 aa6.13□□□□□ -1.43
PTPN4-206ENST00000441089 CACNA1BQ00975 2339 aa6.13□□□□□ -1.43
PTPN4-206ENST00000441089 GNAT3A8MTJ3 354 aa6.13□□□□□ -1.43
PTPN4-206ENST00000441089 BACH1O14867 736 aa6.13□□□□□ -1.43
PTPN4-206ENST00000441089 NTSR2O95665 410 aa6.13□□□□□ -1.43
PTPN4-206ENST00000441089 CCL5P13501 91 aa6.13□□□□□ -1.43
PTPN4-206ENST00000441089 GPTP24298 496 aa6.13□□□□□ -1.43
PTPN4-206ENST00000441089 HOXD10P28358 340 aa6.13□□□□□ -1.43
PTPN4-206ENST00000441089 GRK4P32298 578 aa6.13□□□□□ -1.43
PTPN4-206ENST00000441089 IREB2P48200 963 aaKnown RBP6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms