RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 HPS5Q9UPZ3 1129 aa20.77■□□□□ 0.92
USP48-204ENST00000400301 CASP14P31944 242 aa20.77■□□□□ 0.92
USP48-204ENST00000400301 COL9A3Q14050 684 aaPredicted RBP20.77■□□□□ 0.92
USP48-204ENST00000400301 ENGASEQ8NFI3 743 aa20.77■□□□□ 0.92
USP48-204ENST00000400301 OR8K1Q8NGG5 319 aa20.77■□□□□ 0.92
USP48-204ENST00000400301 USP17L8P0C7I0 530 aa20.77■□□□□ 0.92
USP48-204ENST00000400301 LONP1P36776 959 aaKnown RBP20.77■□□□□ 0.92
USP48-204ENST00000400301 TMEM232C9JQI7 657 aa20.77■□□□□ 0.91
USP48-204ENST00000400301 UIMC1Q96RL1 719 aa20.77■□□□□ 0.91
USP48-204ENST00000400301 ADCY7P51828 1080 aa20.76■□□□□ 0.91
USP48-204ENST00000400301 ENAHQ8N8S7 591 aaPredicted RBP20.76■□□□□ 0.91
USP48-204ENST00000400301 SPDYE3A6NKU9 549 aa20.76■□□□□ 0.91
USP48-204ENST00000400301 FOXN1O15353 648 aa20.76■□□□□ 0.91
USP48-204ENST00000400301 TUBBP07437 444 aa20.76■□□□□ 0.91
USP48-204ENST00000400301 TUBB2AQ13885 445 aa20.76■□□□□ 0.91
USP48-204ENST00000400301 CALCRLQ16602 461 aa20.76■□□□□ 0.91
USP48-204ENST00000400301 TUBB2BQ9BVA1 445 aa20.76■□□□□ 0.91
USP48-204ENST00000400301 SRP68Q9UHB9 627 aaKnown RBP20.76■□□□□ 0.91
USP48-204ENST00000400301 EFCAB8A8MWE9 144 aa20.76■□□□□ 0.91
USP48-204ENST00000400301 H7C1D1 291 aa20.76■□□□□ 0.91
USP48-204ENST00000400301 VPS18Q9P253 973 aa20.76■□□□□ 0.91
USP48-204ENST00000400301 CASP1P29466 404 aa20.75■□□□□ 0.91
USP48-204ENST00000400301 TNIP1Q15025 636 aa20.75■□□□□ 0.91
USP48-204ENST00000400301 JAKMIP2Q96AA8 810 aa20.75■□□□□ 0.91
USP48-204ENST00000400301 BRIP1Q9BX63 1249 aa20.75■□□□□ 0.91
USP48-204ENST00000400301 TECP42680 631 aa20.75■□□□□ 0.91
USP48-204ENST00000400301 COPB1P53618 953 aaKnown RBP20.75■□□□□ 0.91
USP48-204ENST00000400301 HDXQ7Z353 690 aa20.75■□□□□ 0.91
USP48-204ENST00000400301 PAGE5Q96GU1 130 aa20.75■□□□□ 0.91
USP48-204ENST00000400301 MINPP1Q9UNW1 487 aa20.75■□□□□ 0.91
USP48-204ENST00000400301 CLEC4GQ6UXB4 293 aa20.75■□□□□ 0.91
USP48-204ENST00000400301 GPR161Q8N6U8 529 aaKnown RBP20.75■□□□□ 0.91
USP48-204ENST00000400301 NUP58Q9BVL2 599 aa20.75■□□□□ 0.91
USP48-204ENST00000400301 DYNLL2Q96FJ2 89 aa20.74■□□□□ 0.91
USP48-204ENST00000400301 PRDX5P30044 214 aa20.74■□□□□ 0.91
USP48-204ENST00000400301 BTDP43251 543 aa20.74■□□□□ 0.91
USP48-204ENST00000400301 GTF2IP78347 998 aa20.74■□□□□ 0.91
USP48-204ENST00000400301 RBL2Q08999 1139 aa20.74■□□□□ 0.91
USP48-204ENST00000400301 CELF1Q92879 486 aaKnown RBP20.74■□□□□ 0.91
USP48-204ENST00000400301 OR52Z1P0C646 297 aa20.74■□□□□ 0.91
USP48-204ENST00000400301 TMTC3Q6ZXV5 915 aa20.74■□□□□ 0.91
USP48-204ENST00000400301 CYP2D6P10635 497 aa20.74■□□□□ 0.91
USP48-204ENST00000400301 DIXDC1Q155Q3 683 aa20.74■□□□□ 0.91
USP48-204ENST00000400301 CCDC65Q8IXS2 484 aa20.74■□□□□ 0.91
USP48-204ENST00000400301 ZNF512BQ96KM6 892 aaPredicted RBP20.74■□□□□ 0.91
USP48-204ENST00000400301 KIAA0754O94854 1291 aa20.73■□□□□ 0.91
USP48-204ENST00000400301 ZNF34Q8IZ26 560 aa20.73■□□□□ 0.91
USP48-204ENST00000400301 TBC1D22AQ8WUA7 517 aa20.73■□□□□ 0.91
USP48-204ENST00000400301 EPB41L4AQ9HCS5 686 aaPredicted RBP20.73■□□□□ 0.91
USP48-204ENST00000400301 PPP1R1BQ9UD71 204 aaPredicted RBP20.73■□□□□ 0.91
USP48-204ENST00000400301 PCDHA4Q9UN74 947 aa20.73■□□□□ 0.91
USP48-204ENST00000400301 PEAK1Q9H792 1746 aa20.73■□□□□ 0.91
USP48-204ENST00000400301 FAM182BQ5T319 152 aa20.73■□□□□ 0.91
USP48-204ENST00000400301 SYCP3Q8IZU3 236 aa20.73■□□□□ 0.91
USP48-204ENST00000400301 MTA3Q9BTC8 594 aa20.73■□□□□ 0.91
USP48-204ENST00000400301 PRR29P0C7W0 189 aa20.72■□□□□ 0.91
USP48-204ENST00000400301 ARMCX5Q6P1M9 558 aa20.72■□□□□ 0.91
USP48-204ENST00000400301 RBM43Q6ZSC3 357 aaKnown RBP20.72■□□□□ 0.91
USP48-204ENST00000400301 NEK8Q86SG6 692 aa20.72■□□□□ 0.91
USP48-204ENST00000400301 METTL16Q86W50 562 aaKnown RBP20.72■□□□□ 0.91
USP48-204ENST00000400301 ZNF579Q8NAF0 562 aaKnown RBP20.72■□□□□ 0.91
USP48-204ENST00000400301 PNPLA7Q6ZV29 1317 aa20.72■□□□□ 0.91
USP48-204ENST00000400301 GALNT17Q6IS24 598 aa20.72■□□□□ 0.91
USP48-204ENST00000400301 PHLPP2Q6ZVD8 1323 aa20.72■□□□□ 0.91
USP48-204ENST00000400301 CAPN2P17655 700 aa20.72■□□□□ 0.91
USP48-204ENST00000400301 EHMT1Q9H9B1 1298 aa20.72■□□□□ 0.91
USP48-204ENST00000400301 FAM207AQ9NSI2 230 aaPredicted RBP20.72■□□□□ 0.91
USP48-204ENST00000400301 NMT2O60551 498 aa20.72■□□□□ 0.91
USP48-204ENST00000400301 AGXT2Q9BYV1 514 aa20.72■□□□□ 0.91
USP48-204ENST00000400301 FRMPD2Q68DX3 1309 aaPredicted RBP20.71■□□□□ 0.91
USP48-204ENST00000400301 PRPF4BQ13523 1007 aaKnown RBP20.71■□□□□ 0.91
USP48-204ENST00000400301 USP8P40818 1118 aa20.71■□□□□ 0.91
USP48-204ENST00000400301 DNM2P50570 870 aa20.71■□□□□ 0.91
USP48-204ENST00000400301 STXBP4Q6ZWJ1 553 aa20.71■□□□□ 0.91
USP48-204ENST00000400301 LRRC47Q8N1G4 583 aaKnown RBP20.71■□□□□ 0.91
USP48-204ENST00000400301 ZFP91Q96JP5 570 aaPredicted RBP20.71■□□□□ 0.91
USP48-204ENST00000400301 EIF4ENIF1Q9NRA8 985 aaKnown RBP20.71■□□□□ 0.91
USP48-204ENST00000400301 SOWAHDA6NJG2 315 aa20.71■□□□□ 0.91
USP48-204ENST00000400301 DPF2Q92785 391 aa20.71■□□□□ 0.91
USP48-204ENST00000400301 USP17L3A6NCW0 530 aa20.7■□□□□ 0.9
USP48-204ENST00000400301 USP17L4A6NCW7 530 aa20.7■□□□□ 0.9
USP48-204ENST00000400301 RAD51AP2Q09MP3 1159 aa20.7■□□□□ 0.9
USP48-204ENST00000400301 USP17L1Q7RTZ2 530 aa20.7■□□□□ 0.9
USP48-204ENST00000400301 TBC1D7Q9P0N9 293 aa20.7■□□□□ 0.9
USP48-204ENST00000400301 SHTN1A0MZ66 631 aa20.7■□□□□ 0.9
USP48-204ENST00000400301 RCAN1P53805 252 aa20.7■□□□□ 0.9
USP48-204ENST00000400301 CCZ1BP86790 482 aa20.7■□□□□ 0.9
USP48-204ENST00000400301 CCZ1P86791 482 aaPredicted RBP20.7■□□□□ 0.9
USP48-204ENST00000400301 HERC4Q5GLZ8 1057 aaPredicted RBP20.7■□□□□ 0.9
USP48-204ENST00000400301 LEMD3Q9Y2U8 911 aa20.7■□□□□ 0.9
USP48-204ENST00000400301 EPN1Q9Y6I3 576 aaPredicted RBP20.7■□□□□ 0.9
USP48-204ENST00000400301 RAPGEF1Q13905 1077 aa20.7■□□□□ 0.9
USP48-204ENST00000400301 TSGA10Q9BZW7 698 aa20.7■□□□□ 0.9
USP48-204ENST00000400301 USP21Q9UK80 565 aa20.7■□□□□ 0.9
USP48-204ENST00000400301 SAMM50Q9Y512 469 aa20.7■□□□□ 0.9
USP48-204ENST00000400301 FBXO38Q6PIJ6 1188 aa20.69■□□□□ 0.9
USP48-204ENST00000400301 FER1L4A9Z1Z3 1794 aa20.69■□□□□ 0.9
USP48-204ENST00000400301 SLC1A4P43007 532 aa20.69■□□□□ 0.9
USP48-204ENST00000400301 CETN1Q12798 172 aa20.69■□□□□ 0.9
USP48-204ENST00000400301 DCP1AQ9NPI6 582 aaPredicted RBP20.69■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 126.9 ms