RNA–Protein interactions for RNA: ENST00000373019.4

SF3A3-201, Transcript of splicing factor 3a subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A3, Length 3,673 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-201ENST00000373019 PDIA5Q14554 519 aa10.69□□□□□ -0.7
SF3A3-201ENST00000373019 CWF19L1Q69YN2 538 aaKnown RBP10.69□□□□□ -0.7
SF3A3-201ENST00000373019 CNGA4Q8IV77 575 aa10.69□□□□□ -0.7
SF3A3-201ENST00000373019 CCDC47Q96A33 483 aaKnown RBP10.69□□□□□ -0.7
SF3A3-201ENST00000373019 CCDC8Q9H0W5 538 aaPredicted RBP10.69□□□□□ -0.7
SF3A3-201ENST00000373019 SPATA31A3Q5VYP0 1347 aa10.68□□□□□ -0.7
SF3A3-201ENST00000373019 SRRM3A6NNA2 597 aaPredicted RBP10.68□□□□□ -0.7
SF3A3-201ENST00000373019 BUB1BO60566 1050 aaPredicted RBP10.68□□□□□ -0.7
SF3A3-201ENST00000373019 NR1D1P20393 614 aa10.68□□□□□ -0.7
SF3A3-201ENST00000373019 CDC25AP30304 524 aa10.68□□□□□ -0.7
SF3A3-201ENST00000373019 MORC3Q14149 939 aa10.68□□□□□ -0.7
SF3A3-201ENST00000373019 CRELD2Q6UXH1 353 aaPredicted RBP10.68□□□□□ -0.7
SF3A3-201ENST00000373019 RPUSD2Q8IZ73 545 aaKnown RBP10.68□□□□□ -0.7
SF3A3-201ENST00000373019 KCNH5Q8NCM2 988 aa10.68□□□□□ -0.7
SF3A3-201ENST00000373019 PIK3R5Q8WYR1 880 aa10.68□□□□□ -0.7
SF3A3-201ENST00000373019 EZH1Q92800 747 aaPredicted RBP10.68□□□□□ -0.7
SF3A3-201ENST00000373019 CHP1Q99653 195 aa10.68□□□□□ -0.7
SF3A3-201ENST00000373019 PAIP2Q9BPZ3 127 aaKnown RBP10.68□□□□□ -0.7
SF3A3-201ENST00000373019 SEC31BQ9NQW1 1179 aa10.68□□□□□ -0.7
SF3A3-201ENST00000373019 LEMD3Q9Y2U8 911 aa10.68□□□□□ -0.7
SF3A3-201ENST00000373019 NCAPD2Q15021 1401 aa10.68□□□□□ -0.7
SF3A3-201ENST00000373019 DNAJC8O75937 253 aaPredicted RBP10.68□□□□□ -0.7
SF3A3-201ENST00000373019 CLSTN1O94985 981 aa10.68□□□□□ -0.7
SF3A3-201ENST00000373019 ITGB3BPQ13352 177 aaPredicted RBP10.68□□□□□ -0.7
SF3A3-201ENST00000373019 CCDC102BQ68D86 513 aa10.68□□□□□ -0.7
SF3A3-201ENST00000373019 SYNE3Q6ZMZ3 975 aa10.68□□□□□ -0.7
SF3A3-201ENST00000373019 CCDC51Q96ER9 411 aa10.68□□□□□ -0.7
SF3A3-201ENST00000373019 L3MBTL3Q96JM7 780 aaPredicted RBP10.68□□□□□ -0.7
SF3A3-201ENST00000373019 A0A0G2JLW4 131 aa10.68□□□□□ -0.7
SF3A3-201ENST00000373019 KIF23Q02241 960 aaPredicted RBP10.68□□□□□ -0.7
SF3A3-201ENST00000373019 MTHFSDQ2M296 383 aaKnown RBP10.68□□□□□ -0.7
SF3A3-201ENST00000373019 FAM182BQ5T319 152 aa10.68□□□□□ -0.7
SF3A3-201ENST00000373019 BEND3Q5T5X7 828 aa10.68□□□□□ -0.7
SF3A3-201ENST00000373019 SLC30A9Q6PML9 568 aa10.68□□□□□ -0.7
SF3A3-201ENST00000373019 MLKLQ8NB16 471 aa10.68□□□□□ -0.7
SF3A3-201ENST00000373019 CCT6BQ92526 530 aa10.68□□□□□ -0.7
SF3A3-201ENST00000373019 CAVIN3Q969G5 261 aa10.68□□□□□ -0.7
SF3A3-201ENST00000373019 ZNF274Q96GC6 653 aaPredicted RBP10.68□□□□□ -0.7
SF3A3-201ENST00000373019 EPAS1Q99814 870 aa10.68□□□□□ -0.7
SF3A3-201ENST00000373019 BAIAP2L1Q9UHR4 511 aa10.68□□□□□ -0.7
SF3A3-201ENST00000373019 PPIP5K2O43314 1243 aa10.67□□□□□ -0.7
SF3A3-201ENST00000373019 HSF2BPO75031 334 aa10.67□□□□□ -0.7
SF3A3-201ENST00000373019 PPP6R2O75170 966 aa10.67□□□□□ -0.7
SF3A3-201ENST00000373019 ABL2P42684 1182 aa10.67□□□□□ -0.7
SF3A3-201ENST00000373019 PAPOLAP51003 745 aaKnown RBP10.67□□□□□ -0.7
SF3A3-201ENST00000373019 EPHB4P54760 987 aa10.67□□□□□ -0.7
SF3A3-201ENST00000373019 SLC7A5Q01650 507 aa10.67□□□□□ -0.7
SF3A3-201ENST00000373019 NFXL1Q6ZNB6 911 aa10.67□□□□□ -0.7
SF3A3-201ENST00000373019 MMGT1Q8N4V1 131 aa10.67□□□□□ -0.7
SF3A3-201ENST00000373019 TRIM58Q8NG06 486 aa10.67□□□□□ -0.7
SF3A3-201ENST00000373019 AIDAQ96BJ3 306 aa10.67□□□□□ -0.7
SF3A3-201ENST00000373019 C8orf76Q96K31 380 aa10.67□□□□□ -0.7
SF3A3-201ENST00000373019 SENP2Q9HC62 589 aa10.67□□□□□ -0.7
SF3A3-201ENST00000373019 SLC5A4Q9NY91 659 aa10.67□□□□□ -0.7
SF3A3-201ENST00000373019 RGPD1P0DJD0 1748 aa10.67□□□□□ -0.7
SF3A3-201ENST00000373019 UPP2O95045 317 aa10.67□□□□□ -0.7
SF3A3-201ENST00000373019 CKAP4Q07065 602 aaKnown RBP10.67□□□□□ -0.7
SF3A3-201ENST00000373019 LAMB3Q13751 1172 aa10.67□□□□□ -0.7
SF3A3-201ENST00000373019 BLMHQ13867 455 aa10.67□□□□□ -0.7
SF3A3-201ENST00000373019 FKBP15Q5T1M5 1219 aa10.67□□□□□ -0.7
SF3A3-201ENST00000373019 CYP26C1Q6V0L0 522 aa10.67□□□□□ -0.7
SF3A3-201ENST00000373019 CHST3Q7LGC8 479 aa10.67□□□□□ -0.7
SF3A3-201ENST00000373019 FAM163AQ96GL9 167 aaPredicted RBP10.67□□□□□ -0.7
SF3A3-201ENST00000373019 MAP3K14Q99558 947 aa10.67□□□□□ -0.7
SF3A3-201ENST00000373019 PPANQ9NQ55 473 aaKnown RBP10.67□□□□□ -0.7
SF3A3-201ENST00000373019 KCNH3Q9ULD8 1083 aa10.67□□□□□ -0.7
SF3A3-201ENST00000373019 ROBO1Q9Y6N7 1651 aa10.67□□□□□ -0.7
SF3A3-201ENST00000373019 ZNF609O15014 1411 aa10.67□□□□□ -0.7
SF3A3-201ENST00000373019 PYGBP11216 843 aa10.66□□□□□ -0.7
SF3A3-201ENST00000373019 USP4Q13107 963 aa10.66□□□□□ -0.7
SF3A3-201ENST00000373019 MTA1Q13330 715 aa10.66□□□□□ -0.7
SF3A3-201ENST00000373019 EMBQ6PCB8 327 aa10.66□□□□□ -0.7
SF3A3-201ENST00000373019 TBC1D5Q92609 795 aa10.66□□□□□ -0.7
SF3A3-201ENST00000373019 NDUFA10O95299 355 aa10.66□□□□□ -0.7
SF3A3-201ENST00000373019 HERVK_113P62684 666 aa10.66□□□□□ -0.7
SF3A3-201ENST00000373019 MKRN4PQ13434 485 aaPredicted RBP10.66□□□□□ -0.7
SF3A3-201ENST00000373019 CREG2Q8IUH2 290 aa10.66□□□□□ -0.7
SF3A3-201ENST00000373019 MFN1Q8IWA4 741 aa10.66□□□□□ -0.7
SF3A3-201ENST00000373019 PAPOLBQ9NRJ5 636 aaKnown RBP10.66□□□□□ -0.7
SF3A3-201ENST00000373019 U3KPZ7 1027 aaPredicted RBP10.66□□□□□ -0.7
SF3A3-201ENST00000373019 EDC4Q6P2E9 1401 aaKnown RBP10.66□□□□□ -0.7
SF3A3-201ENST00000373019 LIN7AO14910 233 aaPredicted RBP10.66□□□□□ -0.7
SF3A3-201ENST00000373019 PPFIA2O75334 1257 aa10.66□□□□□ -0.7
SF3A3-201ENST00000373019 CDKAL1Q5VV42 579 aa10.66□□□□□ -0.7
SF3A3-201ENST00000373019 HIBCHQ6NVY1 386 aaPredicted RBP10.66□□□□□ -0.7
SF3A3-201ENST00000373019 ELOA2Q8IYF1 753 aaPredicted RBP10.66□□□□□ -0.7
SF3A3-201ENST00000373019 EHBP1Q8NDI1 1231 aa10.66□□□□□ -0.7
SF3A3-201ENST00000373019 SEC16BQ96JE7 1060 aa10.66□□□□□ -0.7
SF3A3-201ENST00000373019 RUFY1Q96T51 708 aa10.66□□□□□ -0.7
SF3A3-201ENST00000373019 EPN1Q9Y6I3 576 aaPredicted RBP10.66□□□□□ -0.7
SF3A3-201ENST00000373019 ITIH6Q6UXX5 1313 aa10.66□□□□□ -0.7
SF3A3-201ENST00000373019 A0A1B0GVG6 124 aa10.65□□□□□ -0.7
SF3A3-201ENST00000373019 MAP3K13O43283 966 aa10.65□□□□□ -0.7
SF3A3-201ENST00000373019 HMGB1P09429 215 aaKnown RBP10.65□□□□□ -0.7
SF3A3-201ENST00000373019 PPARAQ07869 468 aa10.65□□□□□ -0.7
SF3A3-201ENST00000373019 RIPK1Q13546 671 aa10.65□□□□□ -0.7
SF3A3-201ENST00000373019 TAF7Q15545 349 aaPredicted RBP10.65□□□□□ -0.7
SF3A3-201ENST00000373019 PPP4R3AQ6IN85 833 aa10.65□□□□□ -0.7
SF3A3-201ENST00000373019 ANKRD23Q86SG2 305 aa10.65□□□□□ -0.7
SF3A3-201ENST00000373019 TAX1BP1Q86VP1 789 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms