RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 FLRT1Q9NZU1 646 aa21.16■□□□□ 0.98
HDDC3-201ENST00000330334 PPP1R9AQ9ULJ8 1098 aa21.16■□□□□ 0.98
HDDC3-201ENST00000330334 COLQQ9Y215 455 aaPredicted RBP21.16■□□□□ 0.98
HDDC3-201ENST00000330334 RANBP2P49792 3224 aaKnown RBP21.16■□□□□ 0.98
HDDC3-201ENST00000330334 F5H6K3 240 aa21.15■□□□□ 0.98
HDDC3-201ENST00000330334 VWA5AO00534 786 aa21.15■□□□□ 0.98
HDDC3-201ENST00000330334 EVI5O60447 810 aa21.15■□□□□ 0.98
HDDC3-201ENST00000330334 ADORA2AP29274 412 aa21.15■□□□□ 0.98
HDDC3-201ENST00000330334 CCND3P30281 292 aaPredicted RBP21.15■□□□□ 0.98
HDDC3-201ENST00000330334 PDE4BQ07343 736 aa21.15■□□□□ 0.98
HDDC3-201ENST00000330334 KLRC3Q07444 240 aa21.15■□□□□ 0.98
HDDC3-201ENST00000330334 TMEM132BQ14DG7 1078 aa21.15■□□□□ 0.98
HDDC3-201ENST00000330334 DPP9Q86TI2 863 aa21.15■□□□□ 0.98
HDDC3-201ENST00000330334 SMC5Q8IY18 1101 aa21.15■□□□□ 0.98
HDDC3-201ENST00000330334 DIS3LQ8TF46 1054 aaKnown RBP21.15■□□□□ 0.98
HDDC3-201ENST00000330334 NAPBQ9H115 298 aa21.15■□□□□ 0.98
HDDC3-201ENST00000330334 MTMR4Q9NYA4 1195 aa21.15■□□□□ 0.98
HDDC3-201ENST00000330334 A0A0G2JMZ2 1700 aa21.15■□□□□ 0.98
HDDC3-201ENST00000330334 GREB1LQ9C091 1923 aaPredicted RBP21.14■□□□□ 0.98
HDDC3-201ENST00000330334 MSCO60682 206 aa21.14■□□□□ 0.97
HDDC3-201ENST00000330334 PLS1Q14651 629 aa21.14■□□□□ 0.97
HDDC3-201ENST00000330334 RIOX2Q8IUF8 465 aa21.14■□□□□ 0.97
HDDC3-201ENST00000330334 FBXO28Q9NVF7 368 aa21.14■□□□□ 0.97
HDDC3-201ENST00000330334 COPB2P35606 906 aa21.13■□□□□ 0.97
HDDC3-201ENST00000330334 PPARAQ07869 468 aa21.13■□□□□ 0.97
HDDC3-201ENST00000330334 FAM83BQ5T0W9 1011 aa21.13■□□□□ 0.97
HDDC3-201ENST00000330334 NCAPG2Q86XI2 1143 aa21.13■□□□□ 0.97
HDDC3-201ENST00000330334 STK11IPQ8N1F8 1099 aa21.13■□□□□ 0.97
HDDC3-201ENST00000330334 NEDD1Q8NHV4 660 aa21.13■□□□□ 0.97
HDDC3-201ENST00000330334 C11orf49Q9H6J7 331 aa21.13■□□□□ 0.97
HDDC3-201ENST00000330334 HELLSQ9NRZ9 838 aa21.13■□□□□ 0.97
HDDC3-201ENST00000330334 CLIP2Q9UDT6 1046 aa21.13■□□□□ 0.97
HDDC3-201ENST00000330334 PLIN4Q96Q06 1357 aa21.12■□□□□ 0.97
HDDC3-201ENST00000330334 COBLO75128 1261 aa21.12■□□□□ 0.97
HDDC3-201ENST00000330334 PRDM1O75626 825 aa21.12■□□□□ 0.97
HDDC3-201ENST00000330334 TTLL1O95922 423 aa21.12■□□□□ 0.97
HDDC3-201ENST00000330334 NDUFB10O96000 172 aa21.12■□□□□ 0.97
HDDC3-201ENST00000330334 FCER1AP12319 257 aa21.12■□□□□ 0.97
HDDC3-201ENST00000330334 STAT3P40763 770 aa21.12■□□□□ 0.97
HDDC3-201ENST00000330334 PRPF38AQ8NAV1 312 aaKnown RBP21.12■□□□□ 0.97
HDDC3-201ENST00000330334 REPS2Q8NFH8 660 aa21.12■□□□□ 0.97
HDDC3-201ENST00000330334 CEP95Q96GE4 821 aa21.12■□□□□ 0.97
HDDC3-201ENST00000330334 SLF1Q9BQI6 1058 aa21.12■□□□□ 0.97
HDDC3-201ENST00000330334 ZNF214Q9UL59 606 aaPredicted RBP21.12■□□□□ 0.97
HDDC3-201ENST00000330334 ZNF236Q9UL36 1845 aa21.12■□□□□ 0.97
HDDC3-201ENST00000330334 FOXP2O15409 715 aa21.11■□□□□ 0.97
HDDC3-201ENST00000330334 COL6A1P12109 1028 aa21.11■□□□□ 0.97
HDDC3-201ENST00000330334 CYP2C19P33261 490 aa21.11■□□□□ 0.97
HDDC3-201ENST00000330334 ALX1Q15699 326 aa21.11■□□□□ 0.97
HDDC3-201ENST00000330334 PPP4R3BQ5MIZ7 849 aa21.11■□□□□ 0.97
HDDC3-201ENST00000330334 GMCL1P1Q8NEA9 526 aa21.11■□□□□ 0.97
HDDC3-201ENST00000330334 PRO3102Q9H379 93 aa21.11■□□□□ 0.97
HDDC3-201ENST00000330334 ANAPC4Q9UJX5 808 aa21.11■□□□□ 0.97
HDDC3-201ENST00000330334 ATP2A1O14983 1001 aa21.1■□□□□ 0.97
HDDC3-201ENST00000330334 RAD21O60216 631 aa21.1■□□□□ 0.97
HDDC3-201ENST00000330334 TSPY3P0CV98 308 aa21.1■□□□□ 0.97
HDDC3-201ENST00000330334 TSPY8P0CW00 308 aa21.1■□□□□ 0.97
HDDC3-201ENST00000330334 CYBAP13498 195 aa21.1■□□□□ 0.97
HDDC3-201ENST00000330334 CHRDL2Q6WN34 429 aa21.1■□□□□ 0.97
HDDC3-201ENST00000330334 PCDH10Q9P2E7 1040 aa21.1■□□□□ 0.97
HDDC3-201ENST00000330334 DDX20Q9UHI6 824 aaKnown RBP21.1■□□□□ 0.97
HDDC3-201ENST00000330334 DIS3Q9Y2L1 958 aaKnown RBP21.1■□□□□ 0.97
HDDC3-201ENST00000330334 TFAP4Q01664 338 aa21.09■□□□□ 0.97
HDDC3-201ENST00000330334 LNPKQ9C0E8 428 aa21.09■□□□□ 0.97
HDDC3-201ENST00000330334 OSBPL3Q9H4L5 887 aa21.09■□□□□ 0.97
HDDC3-201ENST00000330334 NRBP1Q9UHY1 535 aa21.09■□□□□ 0.97
HDDC3-201ENST00000330334 DDX52Q9Y2R4 599 aaKnown RBP eCLIP21.09■□□□□ 0.97
HDDC3-201ENST00000330334 TRIOBPQ9H2D6 2365 aa21.09■□□□□ 0.97
HDDC3-201ENST00000330334 FGRP09769 529 aa21.08■□□□□ 0.97
HDDC3-201ENST00000330334 FXR1P51114 621 aaKnown RBP eCLIP21.08■□□□□ 0.97
HDDC3-201ENST00000330334 MCMDC2Q4G0Z9 681 aa21.08■□□□□ 0.97
HDDC3-201ENST00000330334 SAMD1Q6SPF0 538 aaPredicted RBP21.08■□□□□ 0.97
HDDC3-201ENST00000330334 CCDC129Q6ZRS4 1044 aa21.08■□□□□ 0.97
HDDC3-201ENST00000330334 CHD1LQ86WJ1 897 aa21.08■□□□□ 0.97
HDDC3-201ENST00000330334 TRPV1Q8NER1 839 aa21.08■□□□□ 0.97
HDDC3-201ENST00000330334 MAML3Q96JK9 1138 aa21.08■□□□□ 0.97
HDDC3-201ENST00000330334 NUP88Q99567 741 aaPredicted RBP21.08■□□□□ 0.97
HDDC3-201ENST00000330334 TEX13BQ9BXU2 312 aa21.08■□□□□ 0.97
HDDC3-201ENST00000330334 FEM1BQ9UK73 627 aa21.08■□□□□ 0.97
HDDC3-201ENST00000330334 PARP14Q460N5 1801 aa21.08■□□□□ 0.96
HDDC3-201ENST00000330334 PFASO15067 1338 aa21.07■□□□□ 0.96
HDDC3-201ENST00000330334 IGHDP01880 384 aa21.07■□□□□ 0.96
HDDC3-201ENST00000330334 NUCB1Q02818 461 aa21.07■□□□□ 0.96
HDDC3-201ENST00000330334 KCTD2Q14681 263 aa21.07■□□□□ 0.96
HDDC3-201ENST00000330334 FAM47AQ5JRC9 791 aa21.07■□□□□ 0.96
HDDC3-201ENST00000330334 MMP19Q99542 508 aa21.07■□□□□ 0.96
HDDC3-201ENST00000330334 RBM27Q9P2N5 1060 aaKnown RBP21.07■□□□□ 0.96
HDDC3-201ENST00000330334 A0A1W2PPC1 479 aa21.06■□□□□ 0.96
HDDC3-201ENST00000330334 SEPT4O43236 478 aa21.06■□□□□ 0.96
HDDC3-201ENST00000330334 ZBED4O75132 1171 aa21.06■□□□□ 0.96
HDDC3-201ENST00000330334 FDX1P10109 184 aa21.06■□□□□ 0.96
HDDC3-201ENST00000330334 CNGA1P29973 690 aa21.06■□□□□ 0.96
HDDC3-201ENST00000330334 ZNF792Q3KQV3 632 aa21.06■□□□□ 0.96
HDDC3-201ENST00000330334 VPS53Q5VIR6 699 aa21.06■□□□□ 0.96
HDDC3-201ENST00000330334 DHX30Q7L2E3 1194 aaKnown RBP eCLIP21.06■□□□□ 0.96
HDDC3-201ENST00000330334 EXOC6Q8TAG9 804 aa21.06■□□□□ 0.96
HDDC3-201ENST00000330334 DNM1LO00429 736 aa21.05■□□□□ 0.96
HDDC3-201ENST00000330334 ORC4O43929 436 aa21.05■□□□□ 0.96
HDDC3-201ENST00000330334 NOVP48745 357 aa21.05■□□□□ 0.96
HDDC3-201ENST00000330334 OAZ1P54368 228 aa21.05■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms