RNA–Protein interactions for RNA: YLR005W

SSL1, Transcript of Subunit of the core form of RNA polymerase transcription factor TFIIH, yeast

Gene SSL1, Length 1,386 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSL1	YLR005W	HST1	P53685	503 aa		4	□□□□□ -1.77
SSL1	YLR005W	ESBP6	P53918	673 aa		4	□□□□□ -1.77
SSL1	YLR005W	GPD1	Q00055	391 aa	Known RBP	4	□□□□□ -1.77
SSL1	YLR005W	SSL1	Q04673	461 aa	Predicted RBP	4	□□□□□ -1.77
SSL1	YLR005W	TDA5	Q06417	326 aa	Known RBP	4	□□□□□ -1.77
SSL1	YLR005W	YAP7	Q08182	245 aa		4	□□□□□ -1.77
SSL1	YLR005W	CIR2	Q08822	631 aa		4	□□□□□ -1.77
SSL1	YLR005W	ARP7	Q12406	477 aa		4	□□□□□ -1.77
SSL1	YLR005W	DDP1	Q99321	188 aa	Known RBP	4	□□□□□ -1.77
SSL1	YLR005W	HFA1	P32874	2273 aa		4	□□□□□ -1.77
SSL1	YLR005W	ADE3	P07245	946 aa	Known RBP	3.99	□□□□□ -1.77
SSL1	YLR005W	POL30	P15873	258 aa	Known RBP	3.99	□□□□□ -1.77
SSL1	YLR005W	ARF2	P19146	181 aa	Known RBP	3.99	□□□□□ -1.77
SSL1	YLR005W	DAL2	P25335	343 aa		3.99	□□□□□ -1.77
SSL1	YLR005W	CAP1	P28495	268 aa	Known RBP	3.99	□□□□□ -1.77
SSL1	YLR005W	PSO2	P30620	661 aa		3.99	□□□□□ -1.77
SSL1	YLR005W	RPD3	P32561	433 aa		3.99	□□□□□ -1.77
SSL1	YLR005W	MRP4	P32902	394 aa		3.99	□□□□□ -1.77
SSL1	YLR005W	MRP8	P35719	219 aa		3.99	□□□□□ -1.77
SSL1	YLR005W	YBR053C	P38235	358 aa		3.99	□□□□□ -1.77
SSL1	YLR005W	MUM2	P38236	366 aa		3.99	□□□□□ -1.77
SSL1	YLR005W	YBR184W	P38299	523 aa		3.99	□□□□□ -1.77
SSL1	YLR005W	YHR078W	P38799	552 aa		3.99	□□□□□ -1.77
SSL1	YLR005W	PFS1	P38872	237 aa		3.99	□□□□□ -1.77
SSL1	YLR005W	SPF1	P39986	1215 aa	Known RBP	3.99	□□□□□ -1.77
SSL1	YLR005W	RPT2	P40327	437 aa	Known RBP	3.99	□□□□□ -1.77
SSL1	YLR005W	DUG1	P43616	481 aa	Known RBP	3.99	□□□□□ -1.77
SSL1	YLR005W	AIP1	P46680	615 aa	Known RBP	3.99	□□□□□ -1.77
SSL1	YLR005W	VEL1	P53058	206 aa		3.99	□□□□□ -1.77
SSL1	YLR005W	GFD1	Q04839	188 aa	Known RBP	3.99	□□□□□ -1.77
SSL1	YLR005W	HEL2	Q05580	639 aa	Known RBP	3.99	□□□□□ -1.77
SSL1	YLR005W	YLR012C	Q07927	99 aa		3.99	□□□□□ -1.77
SSL1	YLR005W	DIS3	Q08162	1001 aa	Known RBP	3.99	□□□□□ -1.77
SSL1	YLR005W	SIL1	Q08199	421 aa		3.99	□□□□□ -1.77
SSL1	YLR005W	APL5	Q08951	932 aa	Known RBP	3.99	□□□□□ -1.77
SSL1	YLR005W	CDC33	P07260	213 aa	Known RBP	3.98	□□□□□ -1.77
SSL1	YLR005W	DAL81	P21657	970 aa		3.98	□□□□□ -1.77
SSL1	YLR005W	MIH1	P23748	554 aa		3.98	□□□□□ -1.77
SSL1	YLR005W	SED4	P25365	1065 aa		3.98	□□□□□ -1.77
SSL1	YLR005W	YIH1	P25637	258 aa		3.98	□□□□□ -1.77
SSL1	YLR005W	RPC82	P32349	654 aa		3.98	□□□□□ -1.77
SSL1	YLR005W	CDC11	P32458	415 aa		3.98	□□□□□ -1.77
SSL1	YLR005W	RML2	P32611	393 aa		3.98	□□□□□ -1.77
SSL1	YLR005W	PXL1	P36166	706 aa		3.98	□□□□□ -1.77
SSL1	YLR005W	FUI1	P38196	639 aa		3.98	□□□□□ -1.77
SSL1	YLR005W	YBR238C	P38330	731 aa	Known RBP	3.98	□□□□□ -1.77
SSL1	YLR005W	WSC4	P38739	605 aa		3.98	□□□□□ -1.77
SSL1	YLR005W	UME6	P39001	836 aa		3.98	□□□□□ -1.77
SSL1	YLR005W	BDH2	P39713	417 aa		3.98	□□□□□ -1.77
SSL1	YLR005W	ERV46	P39727	415 aa		3.98	□□□□□ -1.77
SSL1	YLR005W	CCT5	P40413	562 aa	Known RBP	3.98	□□□□□ -1.77
SSL1	YLR005W	FET5	P43561	622 aa		3.98	□□□□□ -1.77
SSL1	YLR005W	TAN1	P53072	289 aa	Predicted RBP	3.98	□□□□□ -1.77
SSL1	YLR005W	PEX31	P53203	462 aa		3.98	□□□□□ -1.77
SSL1	YLR005W	YPL113C	Q02961	396 aa		3.98	□□□□□ -1.77
SSL1	YLR005W	AAD4	Q07747	329 aa		3.98	□□□□□ -1.77
SSL1	YLR005W	THI20	Q08224	551 aa		3.98	□□□□□ -1.77
SSL1	YLR005W	NDD1	Q08887	554 aa		3.98	□□□□□ -1.77
SSL1	YLR005W	PUT4	P15380	627 aa		3.97	□□□□□ -1.77
SSL1	YLR005W	STE14	P32584	239 aa		3.97	□□□□□ -1.77
SSL1	YLR005W	YKR078W	P36158	585 aa	Known RBP	3.97	□□□□□ -1.77
SSL1	YLR005W	KAP104	P38217	918 aa	Known RBP	3.97	□□□□□ -1.77
SSL1	YLR005W	LYS9	P38999	446 aa		3.97	□□□□□ -1.77
SSL1	YLR005W	PRM9	P39551	298 aa		3.97	□□□□□ -1.77
SSL1	YLR005W	YER130C	P39959	443 aa		3.97	□□□□□ -1.77
SSL1	YLR005W	TIF34	P40217	347 aa	Known RBP	3.97	□□□□□ -1.77
SSL1	YLR005W	IRR1	P40541	1150 aa		3.97	□□□□□ -1.77
SSL1	YLR005W	SAP185	P40856	1058 aa		3.97	□□□□□ -1.77
SSL1	YLR005W	STU2	P46675	888 aa		3.97	□□□□□ -1.77
SSL1	YLR005W	PHO86	P46956	311 aa		3.97	□□□□□ -1.77
SSL1	YLR005W	YGR237C	P50089	785 aa		3.97	□□□□□ -1.77
SSL1	YLR005W	PRM1	P53835	661 aa		3.97	□□□□□ -1.77
SSL1	YLR005W	ERV41	Q04651	352 aa		3.97	□□□□□ -1.77
SSL1	YLR005W	YOL075C	Q08234	1294 aa		3.97	□□□□□ -1.77
SSL1	YLR005W	ENB1	Q08299	606 aa		3.97	□□□□□ -1.77
SSL1	YLR005W	TAD3	Q9URQ3	322 aa		3.97	□□□□□ -1.77
SSL1	YLR005W	HIS1	P00498	297 aa	Known RBP	3.96	□□□□□ -1.78
SSL1	YLR005W	CDC37	P06101	506 aa	Known RBP	3.96	□□□□□ -1.78
SSL1	YLR005W	MIS1	P09440	975 aa	Known RBP	3.96	□□□□□ -1.78
SSL1	YLR005W	MTF2	P10849	440 aa		3.96	□□□□□ -1.78
SSL1	YLR005W	YPK1	P12688	680 aa	Known RBP	3.96	□□□□□ -1.78
SSL1	YLR005W	MRC1	P25588	1096 aa		3.96	□□□□□ -1.78
SSL1	YLR005W	SEC1	P30619	724 aa	Known RBP	3.96	□□□□□ -1.78
SSL1	YLR005W	HBS1	P32769	611 aa	Known RBP	3.96	□□□□□ -1.78
SSL1	YLR005W	WBP1	P33767	430 aa	Known RBP	3.96	□□□□□ -1.78
SSL1	YLR005W	SRB2	P34162	210 aa		3.96	□□□□□ -1.78
SSL1	YLR005W	ADE17	P38009	592 aa	Known RBP	3.96	□□□□□ -1.78
SSL1	YLR005W	HSL7	P38274	827 aa		3.96	□□□□□ -1.78
SSL1	YLR005W	YEL075C	P39972	122 aa		3.96	□□□□□ -1.78
SSL1	YLR005W	YJL070C	P40361	888 aa		3.96	□□□□□ -1.78
SSL1	YLR005W	TMA108	P40462	946 aa		3.96	□□□□□ -1.78
SSL1	YLR005W	SNZ3	P43545	298 aa		3.96	□□□□□ -1.78
SSL1	YLR005W	BUL1	P48524	976 aa		3.96	□□□□□ -1.78
SSL1	YLR005W	NPY1	P53164	384 aa		3.96	□□□□□ -1.78
SSL1	YLR005W	YTP1	P53584	459 aa		3.96	□□□□□ -1.78
SSL1	YLR005W	SNZ2	P53824	298 aa		3.96	□□□□□ -1.78
SSL1	YLR005W	SWS2	P53937	143 aa		3.96	□□□□□ -1.78
SSL1	YLR005W	AQR1	P53943	586 aa		3.96	□□□□□ -1.78
SSL1	YLR005W	DOS2	P54858	310 aa		3.96	□□□□□ -1.78
SSL1	YLR005W	EBS1	Q03466	884 aa	Known RBP	3.96	□□□□□ -1.78

Retrieved 100 of 5,963 RNA–protein pairs in 7.7 ms