RNA–Protein interactions for RNA: ENST00000617310.4

SMARCA1-205, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1, humanhuman

TSL 2

Gene SMARCA1, Length 4,291 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1-205ENST00000617310 RTKN2Q8IZC4 609 aa11.38□□□□□ -0.59
SMARCA1-205ENST00000617310 CCDC42Q96M95 316 aa11.38□□□□□ -0.59
SMARCA1-205ENST00000617310 CLIC6Q96NY7 704 aa11.38□□□□□ -0.59
SMARCA1-205ENST00000617310 CEP152O94986 1710 aa11.37□□□□□ -0.59
SMARCA1-205ENST00000617310 TULP4Q9NRJ4 1543 aa11.37□□□□□ -0.59
SMARCA1-205ENST00000617310 XRCC6P12956 609 aaKnown RBP eCLIP11.37□□□□□ -0.59
SMARCA1-205ENST00000617310 CDC25AP30304 524 aa11.37□□□□□ -0.59
SMARCA1-205ENST00000617310 SMTNP53814 917 aa11.37□□□□□ -0.59
SMARCA1-205ENST00000617310 CSGALNACT2Q8N6G5 542 aa11.37□□□□□ -0.59
SMARCA1-205ENST00000617310 NEK11Q8NG66 645 aa11.37□□□□□ -0.59
SMARCA1-205ENST00000617310 SH3RF3Q8TEJ3 882 aaPredicted RBP11.37□□□□□ -0.59
SMARCA1-205ENST00000617310 ALS2CR12Q96Q35 445 aa11.37□□□□□ -0.59
SMARCA1-205ENST00000617310 LZTS2Q9BRK4 669 aa11.37□□□□□ -0.59
SMARCA1-205ENST00000617310 CSPG5O95196 566 aa11.37□□□□□ -0.59
SMARCA1-205ENST00000617310 CD2BP2O95400 341 aaKnown RBP11.37□□□□□ -0.59
SMARCA1-205ENST00000617310 TAF12Q16514 161 aa11.37□□□□□ -0.59
SMARCA1-205ENST00000617310 SUPT20HL1Q3ZLR7 823 aa11.37□□□□□ -0.59
SMARCA1-205ENST00000617310 DPP9Q86TI2 863 aa11.37□□□□□ -0.59
SMARCA1-205ENST00000617310 LINC00116Q8NCU8 138 aa11.37□□□□□ -0.59
SMARCA1-205ENST00000617310 DNAI1Q9UI46 699 aa11.37□□□□□ -0.59
SMARCA1-205ENST00000617310 PCDHA12Q9UN75 941 aa11.37□□□□□ -0.59
SMARCA1-205ENST00000617310 TRPC6Q9Y210 931 aa11.37□□□□□ -0.59
SMARCA1-205ENST00000617310 GCNT3O95395 438 aa11.37□□□□□ -0.59
SMARCA1-205ENST00000617310 MYL5Q02045 173 aa11.37□□□□□ -0.59
SMARCA1-205ENST00000617310 NOSTRINQ8IVI9 506 aa11.37□□□□□ -0.59
SMARCA1-205ENST00000617310 CCDC17Q96LX7 622 aa11.37□□□□□ -0.59
SMARCA1-205ENST00000617310 ISCA1Q9BUE6 129 aa11.37□□□□□ -0.59
SMARCA1-205ENST00000617310 GLT8D2Q9H1C3 349 aa11.37□□□□□ -0.59
SMARCA1-205ENST00000617310 LZTFL1Q9NQ48 299 aa11.37□□□□□ -0.59
SMARCA1-205ENST00000617310 ZBTB12Q9Y330 459 aaPredicted RBP11.37□□□□□ -0.59
SMARCA1-205ENST00000617310 ECE2O60344 883 aa11.36□□□□□ -0.59
SMARCA1-205ENST00000617310 PPP2R5BQ15173 497 aa11.36□□□□□ -0.59
SMARCA1-205ENST00000617310 ZNF274Q96GC6 653 aaPredicted RBP11.36□□□□□ -0.59
SMARCA1-205ENST00000617310 CTAGE1Q96RT6 745 aa11.36□□□□□ -0.59
SMARCA1-205ENST00000617310 CRACR2AQ9BSW2 395 aa11.36□□□□□ -0.59
SMARCA1-205ENST00000617310 GJB4Q9NTQ9 266 aa11.36□□□□□ -0.59
SMARCA1-205ENST00000617310 KIDINS220Q9ULH0 1771 aa11.36□□□□□ -0.59
SMARCA1-205ENST00000617310 OVOS2A0A0G2JMS6 1433 aa11.36□□□□□ -0.59
SMARCA1-205ENST00000617310 OVOS2A0A0J9YW53 1432 aa11.36□□□□□ -0.59
SMARCA1-205ENST00000617310 OVOS2Q6IE36 1432 aa11.36□□□□□ -0.59
SMARCA1-205ENST00000617310 ADCY9O60503 1353 aa11.36□□□□□ -0.59
SMARCA1-205ENST00000617310 BICDL2A1A5D9 508 aa11.36□□□□□ -0.59
SMARCA1-205ENST00000617310 GCOM1H8Y6P7 765 aaPredicted RBP11.36□□□□□ -0.59
SMARCA1-205ENST00000617310 CHGBP05060 677 aa11.36□□□□□ -0.59
SMARCA1-205ENST00000617310 POLR2MP0CAP2 368 aa11.36□□□□□ -0.59
SMARCA1-205ENST00000617310 KRT5P13647 590 aa11.36□□□□□ -0.59
SMARCA1-205ENST00000617310 EZH2Q15910 746 aaKnown RBP11.36□□□□□ -0.59
SMARCA1-205ENST00000617310 MIER3Q7Z3K6 550 aa11.36□□□□□ -0.59
SMARCA1-205ENST00000617310 PIGSQ96S52 555 aa11.36□□□□□ -0.59
SMARCA1-205ENST00000617310 PI4KBQ9UBF8 816 aa11.36□□□□□ -0.59
SMARCA1-205ENST00000617310 SERTAD1Q9UHV2 236 aa11.36□□□□□ -0.59
SMARCA1-205ENST00000617310 FRMD4BQ9Y2L6 1034 aa11.36□□□□□ -0.59
SMARCA1-205ENST00000617310 CLTCQ00610 1675 aaKnown RBP11.36□□□□□ -0.59
SMARCA1-205ENST00000617310 ADRA2BP18089 450 aa11.36□□□□□ -0.59
SMARCA1-205ENST00000617310 RPL13P26373 211 aaKnown RBP11.36□□□□□ -0.59
SMARCA1-205ENST00000617310 CYLC1P35663 651 aaPredicted RBP11.36□□□□□ -0.59
SMARCA1-205ENST00000617310 NR5A1Q13285 461 aa11.36□□□□□ -0.59
SMARCA1-205ENST00000617310 CCDC97Q96F63 343 aaPredicted RBP11.36□□□□□ -0.59
SMARCA1-205ENST00000617310 NOC4LQ9BVI4 516 aaKnown RBP11.36□□□□□ -0.59
SMARCA1-205ENST00000617310 SIGLEC1Q9BZZ2 1709 aa11.36□□□□□ -0.59
SMARCA1-205ENST00000617310 FTOQ9C0B1 505 aaKnown RBP eCLIP11.36□□□□□ -0.59
SMARCA1-205ENST00000617310 SPON1Q9HCB6 807 aa11.36□□□□□ -0.59
SMARCA1-205ENST00000617310 PCDHB13Q9Y5F0 798 aa11.36□□□□□ -0.59
SMARCA1-205ENST00000617310 USP31Q70CQ4 1352 aa11.36□□□□□ -0.59
SMARCA1-205ENST00000617310 CARMIL3Q8ND23 1372 aa11.36□□□□□ -0.59
SMARCA1-205ENST00000617310 EXOC3O60645 756 aa11.35□□□□□ -0.59
SMARCA1-205ENST00000617310 CUTAO60888 179 aa11.35□□□□□ -0.59
SMARCA1-205ENST00000617310 CRKP46108 304 aa11.35□□□□□ -0.59
SMARCA1-205ENST00000617310 GPSM2P81274 684 aa11.35□□□□□ -0.59
SMARCA1-205ENST00000617310 KCTD2Q14681 263 aa11.35□□□□□ -0.59
SMARCA1-205ENST00000617310 SLC27A3Q5K4L6 730 aa11.35□□□□□ -0.59
SMARCA1-205ENST00000617310 PLA2G4DQ86XP0 818 aa11.35□□□□□ -0.59
SMARCA1-205ENST00000617310 PI4K2BQ8TCG2 481 aa11.35□□□□□ -0.59
SMARCA1-205ENST00000617310 KANSL2Q9H9L4 492 aa11.35□□□□□ -0.59
SMARCA1-205ENST00000617310 MRPL11Q9Y3B7 192 aaKnown RBP11.35□□□□□ -0.59
SMARCA1-205ENST00000617310 SPATA31A6Q5VVP1 1343 aa11.35□□□□□ -0.59
SMARCA1-205ENST00000617310 POLR1AO95602 1720 aaPredicted RBP11.35□□□□□ -0.59
SMARCA1-205ENST00000617310 TTLL1O95922 423 aa11.35□□□□□ -0.59
SMARCA1-205ENST00000617310 PLCB3Q01970 1234 aa11.35□□□□□ -0.59
SMARCA1-205ENST00000617310 GNPTABQ3T906 1256 aa11.35□□□□□ -0.59
SMARCA1-205ENST00000617310 PRR5LQ6MZQ0 368 aa11.35□□□□□ -0.59
SMARCA1-205ENST00000617310 HOOK3Q86VS8 718 aa11.35□□□□□ -0.59
SMARCA1-205ENST00000617310 AMNQ9BXJ7 453 aa11.35□□□□□ -0.59
SMARCA1-205ENST00000617310 ZNF341Q9BYN7 854 aa11.35□□□□□ -0.59
SMARCA1-205ENST00000617310 MRPL44Q9H9J2 332 aaKnown RBP11.35□□□□□ -0.59
SMARCA1-205ENST00000617310 GUCA1BQ9UMX6 200 aa11.35□□□□□ -0.59
SMARCA1-205ENST00000617310 LUC7L2Q9Y383 392 aaKnown RBP11.35□□□□□ -0.59
SMARCA1-205ENST00000617310 NFE2L3Q9Y4A8 694 aa11.35□□□□□ -0.59
SMARCA1-205ENST00000617310 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.35□□□□□ -0.592e-6■□□□□ 9.7
SMARCA1-205ENST00000617310 PFKFB2O60825 505 aa11.35□□□□□ -0.59
SMARCA1-205ENST00000617310 KRT19P08727 400 aa11.35□□□□□ -0.59
SMARCA1-205ENST00000617310 NAP1L4Q99733 375 aaKnown RBP11.35□□□□□ -0.59
SMARCA1-205ENST00000617310 PTPRUQ92729 1446 aa11.35□□□□□ -0.59
SMARCA1-205ENST00000617310 CETN3O15182 167 aa11.35□□□□□ -0.59
SMARCA1-205ENST00000617310 CDK8P49336 464 aa11.35□□□□□ -0.59
SMARCA1-205ENST00000617310 STRN3Q13033 797 aa11.35□□□□□ -0.59
SMARCA1-205ENST00000617310 PTGDRQ13258 359 aa11.35□□□□□ -0.59
SMARCA1-205ENST00000617310 PRAMEF18Q5VWM3 479 aa11.35□□□□□ -0.59
SMARCA1-205ENST00000617310 STRBPQ96SI9 672 aaKnown RBP11.35□□□□□ -0.59
SMARCA1-205ENST00000617310 GTPBP4Q9BZE4 634 aaKnown RBP11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms