RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 SCYL3Q8IZE3 742 aa17.77■□□□□ 0.44
SS18-215ENST00000580642 FAM177A1Q8N128 213 aaPredicted RBP17.77■□□□□ 0.44
SS18-215ENST00000580642 FAM184AQ8NB25 1140 aa17.77■□□□□ 0.44
SS18-215ENST00000580642 DCAF4Q8WV16 495 aa17.77■□□□□ 0.44
SS18-215ENST00000580642 GMCL1Q96IK5 515 aa17.77■□□□□ 0.44
SS18-215ENST00000580642 RNF26Q9BY78 433 aaPredicted RBP17.77■□□□□ 0.44
SS18-215ENST00000580642 NCOA5Q9HCD5 579 aaKnown RBP17.77■□□□□ 0.44
SS18-215ENST00000580642 TMX2Q9Y320 296 aa17.77■□□□□ 0.44
SS18-215ENST00000580642 FMNL1O95466 1100 aaPredicted RBP17.76■□□□□ 0.43
SS18-215ENST00000580642 PARP1P09874 1014 aaKnown RBP17.76■□□□□ 0.43
SS18-215ENST00000580642 RAB3GAP1Q15042 981 aa17.76■□□□□ 0.43
SS18-215ENST00000580642 MAP3K11Q16584 847 aa17.76■□□□□ 0.43
SS18-215ENST00000580642 SIAH1Q8IUQ4 282 aa17.76■□□□□ 0.43
SS18-215ENST00000580642 SPRYD3Q8NCJ5 442 aa17.76■□□□□ 0.43
SS18-215ENST00000580642 MYL10Q9BUA6 226 aa17.76■□□□□ 0.43
SS18-215ENST00000580642 WDR18Q9BV38 432 aa17.76■□□□□ 0.43
SS18-215ENST00000580642 USP17L5A8MUK1 530 aa17.75■□□□□ 0.43
SS18-215ENST00000580642 SLURP2P0DP57 97 aa17.75■□□□□ 0.43
SS18-215ENST00000580642 PDHBP11177 359 aa17.75■□□□□ 0.43
SS18-215ENST00000580642 IREB2P48200 963 aaKnown RBP17.75■□□□□ 0.43
SS18-215ENST00000580642 SSRP1Q08945 709 aaKnown RBP17.75■□□□□ 0.43
SS18-215ENST00000580642 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.75■□□□□ 0.43
SS18-215ENST00000580642 CDCA5Q96FF9 252 aa17.75■□□□□ 0.43
SS18-215ENST00000580642 WRNIP1Q96S55 665 aa17.75■□□□□ 0.43
SS18-215ENST00000580642 RRAGCQ9HB90 399 aa17.75■□□□□ 0.43
SS18-215ENST00000580642 AS3MTQ9HBK9 375 aa17.75■□□□□ 0.43
SS18-215ENST00000580642 GOPCQ9HD26 462 aa17.75■□□□□ 0.43
SS18-215ENST00000580642 PICK1Q9NRD5 415 aa17.75■□□□□ 0.43
SS18-215ENST00000580642 FOXD4L1Q9NU39 408 aa17.75■□□□□ 0.43
SS18-215ENST00000580642 ORC3Q9UBD5 711 aaPredicted RBP17.75■□□□□ 0.43
SS18-215ENST00000580642 WDR33Q9C0J8 1336 aaKnown RBP17.74■□□□□ 0.43
SS18-215ENST00000580642 ADM5C9JUS6 153 aa17.74■□□□□ 0.43
SS18-215ENST00000580642 PRPF3O43395 683 aaKnown RBP17.74■□□□□ 0.43
SS18-215ENST00000580642 DEXIO95424 95 aa17.74■□□□□ 0.43
SS18-215ENST00000580642 RXRAP19793 462 aa17.74■□□□□ 0.43
SS18-215ENST00000580642 FKBP1BP68106 108 aa17.74■□□□□ 0.43
SS18-215ENST00000580642 JAG1P78504 1218 aa17.74■□□□□ 0.43
SS18-215ENST00000580642 MAP3K9P80192 1104 aa17.74■□□□□ 0.43
SS18-215ENST00000580642 AKAP17AQ02040 695 aaKnown RBP17.74■□□□□ 0.43
SS18-215ENST00000580642 FUT2Q10981 343 aa17.74■□□□□ 0.43
SS18-215ENST00000580642 SPZ1Q9BXG8 430 aa17.74■□□□□ 0.43
SS18-215ENST00000580642 MAD2L2Q9UI95 211 aa17.74■□□□□ 0.43
SS18-215ENST00000580642 SCAF8Q9UPN6 1271 aaKnown RBP17.74■□□□□ 0.43
SS18-215ENST00000580642 CLEC11AQ9Y240 323 aa17.74■□□□□ 0.43
SS18-215ENST00000580642 SSC5DA1L4H1 1573 aa17.74■□□□□ 0.43
SS18-215ENST00000580642 F5H6K3 240 aa17.73■□□□□ 0.43
SS18-215ENST00000580642 USP2O75604 605 aaPredicted RBP17.73■□□□□ 0.43
SS18-215ENST00000580642 USP14P54578 494 aa17.73■□□□□ 0.43
SS18-215ENST00000580642 KLRC3Q07444 240 aa17.73■□□□□ 0.43
SS18-215ENST00000580642 ZNF543Q08ER8 600 aa17.73■□□□□ 0.43
SS18-215ENST00000580642 LARP1BQ659C4 914 aaKnown RBP17.73■□□□□ 0.43
SS18-215ENST00000580642 NBPF11Q86T75 865 aa17.73■□□□□ 0.43
SS18-215ENST00000580642 LRRC47Q8N1G4 583 aaKnown RBP17.73■□□□□ 0.43
SS18-215ENST00000580642 LPAR1Q92633 364 aa17.73■□□□□ 0.43
SS18-215ENST00000580642 KIAA1683Q9H0B3 1180 aa17.73■□□□□ 0.43
SS18-215ENST00000580642 KLRF2D3W0D1 207 aa17.72■□□□□ 0.43
SS18-215ENST00000580642 STX6O43752 255 aa17.72■□□□□ 0.43
SS18-215ENST00000580642 JAK2O60674 1132 aa17.72■□□□□ 0.43
SS18-215ENST00000580642 PLA2G6O60733 806 aa17.72■□□□□ 0.43
SS18-215ENST00000580642 FDPSP14324 419 aaKnown RBP17.72■□□□□ 0.43
SS18-215ENST00000580642 SYT1P21579 422 aa17.72■□□□□ 0.43
SS18-215ENST00000580642 ATP2B2Q01814 1243 aa17.72■□□□□ 0.43
SS18-215ENST00000580642 SLFN13Q68D06 897 aa17.72■□□□□ 0.43
SS18-215ENST00000580642 ARMC9Q7Z3E5 817 aa17.72■□□□□ 0.43
SS18-215ENST00000580642 CCDC144CPQ8IYA2 1237 aa17.72■□□□□ 0.43
SS18-215ENST00000580642 VCPKMTQ9H867 229 aa17.72■□□□□ 0.43
SS18-215ENST00000580642 BRD1O95696 1058 aa17.71■□□□□ 0.43
SS18-215ENST00000580642 XBP1P17861 261 aa17.71■□□□□ 0.43
SS18-215ENST00000580642 INPP5BP32019 993 aa17.71■□□□□ 0.43
SS18-215ENST00000580642 PRAMEF18Q5VWM3 479 aa17.71■□□□□ 0.43
SS18-215ENST00000580642 RAB11FIP4Q86YS3 637 aa17.71■□□□□ 0.43
SS18-215ENST00000580642 ANKRD13AQ8IZ07 590 aa17.71■□□□□ 0.43
SS18-215ENST00000580642 SRBD1Q8N5C6 995 aaKnown RBP17.71■□□□□ 0.43
SS18-215ENST00000580642 RBM46Q8TBY0 533 aaKnown RBP17.71■□□□□ 0.43
SS18-215ENST00000580642 CSADQ9Y600 493 aa17.71■□□□□ 0.43
SS18-215ENST00000580642 A0A1W2PRG0 241 aa17.7■□□□□ 0.42
SS18-215ENST00000580642 C19orf81C9J6K1 198 aa17.7■□□□□ 0.42
SS18-215ENST00000580642 hCG_1984214I3L0E3 225 aa17.7■□□□□ 0.42
SS18-215ENST00000580642 NDUFB10O96000 172 aa17.7■□□□□ 0.42
SS18-215ENST00000580642 PTPRAP18433 802 aa17.7■□□□□ 0.42
SS18-215ENST00000580642 SLC1A4P43007 532 aa17.7■□□□□ 0.42
SS18-215ENST00000580642 BTNL9Q6UXG8 535 aa17.7■□□□□ 0.42
SS18-215ENST00000580642 ZNF713Q8N859 430 aaPredicted RBP17.7■□□□□ 0.42
SS18-215ENST00000580642 ZNF280CQ8ND82 737 aa17.7■□□□□ 0.42
SS18-215ENST00000580642 DDX11Q96FC9 970 aa17.7■□□□□ 0.42
SS18-215ENST00000580642 SLC26A6Q9BXS9 759 aa17.7■□□□□ 0.42
SS18-215ENST00000580642 GLIS2Q9BZE0 524 aaPredicted RBP17.7■□□□□ 0.42
SS18-215ENST00000580642 RIOX1Q9H6W3 641 aa17.7■□□□□ 0.42
SS18-215ENST00000580642 ATP6V1DQ9Y5K8 247 aa17.7■□□□□ 0.42
SS18-215ENST00000580642 CNTNAP5Q8WYK1 1306 aa17.7■□□□□ 0.42
SS18-215ENST00000580642 USP17L10C9JJH3 530 aa17.69■□□□□ 0.42
SS18-215ENST00000580642 PLEKHA8P1O95397 391 aa17.69■□□□□ 0.42
SS18-215ENST00000580642 BMP3P12645 472 aa17.69■□□□□ 0.42
SS18-215ENST00000580642 TRIM29Q14134 588 aa17.69■□□□□ 0.42
SS18-215ENST00000580642 SHROOM1Q2M3G4 852 aaPredicted RBP17.69■□□□□ 0.42
SS18-215ENST00000580642 USP17L2Q6R6M4 530 aa17.69■□□□□ 0.42
SS18-215ENST00000580642 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.69■□□□□ 0.42
SS18-215ENST00000580642 CLEC10AQ8IUN9 316 aa17.69■□□□□ 0.42
SS18-215ENST00000580642 SH3GLB2Q9NR46 395 aa17.69■□□□□ 0.42
SS18-215ENST00000580642 H3BQV1 296 aa17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms