RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 SHROOM1Q2M3G4 852 aaPredicted RBP9.84□□□□□ -0.83
NEDD8-207ENST00000533242 LPAR1Q92633 364 aa9.84□□□□□ -0.83
NEDD8-207ENST00000533242 USP26Q9BXU7 913 aa9.84□□□□□ -0.83
NEDD8-207ENST00000533242 DNM1LO00429 736 aa9.84□□□□□ -0.83
NEDD8-207ENST00000533242 HOXC6P09630 235 aa9.84□□□□□ -0.83
NEDD8-207ENST00000533242 G3BP1Q13283 466 aaKnown RBP eCLIP9.84□□□□□ -0.83
NEDD8-207ENST00000533242 TNPO1Q92973 898 aaKnown RBP9.84□□□□□ -0.83
NEDD8-207ENST00000533242 FLRT1Q9NZU1 646 aa9.84□□□□□ -0.83
NEDD8-207ENST00000533242 SALL3Q9BXA9 1300 aa9.84□□□□□ -0.83
NEDD8-207ENST00000533242 A0A0G2JMZ2 1700 aa9.83□□□□□ -0.84
NEDD8-207ENST00000533242 K7ELQ4 463 aaPredicted RBP9.83□□□□□ -0.84
NEDD8-207ENST00000533242 PDE1AP54750 535 aa9.83□□□□□ -0.84
NEDD8-207ENST00000533242 RTP1P59025 263 aa9.83□□□□□ -0.84
NEDD8-207ENST00000533242 ATP2B2Q01814 1243 aa9.83□□□□□ -0.84
NEDD8-207ENST00000533242 LBX2Q6XYB7 198 aa9.83□□□□□ -0.84
NEDD8-207ENST00000533242 CATSPERGQ6ZRH7 1159 aa9.83□□□□□ -0.84
NEDD8-207ENST00000533242 PRKAG2Q9UGJ0 569 aa9.83□□□□□ -0.84
NEDD8-207ENST00000533242 PALD1Q9ULE6 856 aa9.83□□□□□ -0.84
NEDD8-207ENST00000533242 GNAI2P04899 355 aa9.83□□□□□ -0.84
NEDD8-207ENST00000533242 USP14P54578 494 aa9.83□□□□□ -0.84
NEDD8-207ENST00000533242 TTC39AQ5SRH9 613 aa9.83□□□□□ -0.84
NEDD8-207ENST00000533242 ADGRA1Q86SQ6 560 aa9.83□□□□□ -0.84
NEDD8-207ENST00000533242 FEZ1Q99689 392 aa9.83□□□□□ -0.84
NEDD8-207ENST00000533242 GPR108Q9NPR9 543 aa9.83□□□□□ -0.84
NEDD8-207ENST00000533242 SAP30BPQ9UHR5 308 aaKnown RBP9.83□□□□□ -0.84
NEDD8-207ENST00000533242 GH2P01242 217 aa9.82□□□□□ -0.84
NEDD8-207ENST00000533242 IGHA2P01877 340 aa9.82□□□□□ -0.84
NEDD8-207ENST00000533242 CNGA1P29973 690 aa9.82□□□□□ -0.84
NEDD8-207ENST00000533242 GRB14Q14449 540 aa9.82□□□□□ -0.84
NEDD8-207ENST00000533242 TATDN1Q6P1N9 297 aa9.82□□□□□ -0.84
NEDD8-207ENST00000533242 NPLOC4Q8TAT6 608 aa9.82□□□□□ -0.84
NEDD8-207ENST00000533242 FAM161BQ96MY7 647 aa9.82□□□□□ -0.84
NEDD8-207ENST00000533242 KIAA1683Q9H0B3 1180 aa9.82□□□□□ -0.84
NEDD8-207ENST00000533242 SNRKQ9NRH2 765 aa9.82□□□□□ -0.84
NEDD8-207ENST00000533242 IVNS1ABPQ9Y6Y0 642 aa9.82□□□□□ -0.84
NEDD8-207ENST00000533242 NAV1Q8NEY1 1877 aa9.82□□□□□ -0.84
NEDD8-207ENST00000533242 TRAK2O60296 914 aa9.82□□□□□ -0.84
NEDD8-207ENST00000533242 ATN1P54259 1190 aaPredicted RBP9.82□□□□□ -0.84
NEDD8-207ENST00000533242 CCDC158Q5M9N0 1113 aa9.82□□□□□ -0.84
NEDD8-207ENST00000533242 WDR78Q5VTH9 848 aa9.82□□□□□ -0.84
NEDD8-207ENST00000533242 CERS3Q8IU89 383 aa9.82□□□□□ -0.84
NEDD8-207ENST00000533242 ARRDC4Q8NCT1 418 aa9.82□□□□□ -0.84
NEDD8-207ENST00000533242 TRPV1Q8NER1 839 aa9.82□□□□□ -0.84
NEDD8-207ENST00000533242 ZNF512BQ96KM6 892 aaPredicted RBP9.82□□□□□ -0.84
NEDD8-207ENST00000533242 CDX2Q99626 313 aaPredicted RBP9.82□□□□□ -0.84
NEDD8-207ENST00000533242 EHD4Q9H223 541 aa9.82□□□□□ -0.84
NEDD8-207ENST00000533242 RANBP2P49792 3224 aaKnown RBP9.81□□□□□ -0.84
NEDD8-207ENST00000533242 CYP2E1P05181 493 aaPredicted RBP9.81□□□□□ -0.84
NEDD8-207ENST00000533242 CYBAP13498 195 aa9.81□□□□□ -0.84
NEDD8-207ENST00000533242 RAB3GAP1Q15042 981 aa9.81□□□□□ -0.84
NEDD8-207ENST00000533242 OLFML2BQ68BL8 750 aa9.81□□□□□ -0.84
NEDD8-207ENST00000533242 MAFAQ8NHW3 353 aaPredicted RBP9.81□□□□□ -0.84
NEDD8-207ENST00000533242 SEMA6BQ9H3T3 888 aa9.81□□□□□ -0.84
NEDD8-207ENST00000533242 BTBD7Q9P203 1132 aa9.81□□□□□ -0.84
NEDD8-207ENST00000533242 NDUFB9Q9Y6M9 179 aa9.81□□□□□ -0.84
NEDD8-207ENST00000533242 ZNFX1Q9P2E3 1918 aaKnown RBP9.81□□□□□ -0.84
NEDD8-207ENST00000533242 HMMRO75330 724 aa9.81□□□□□ -0.84
NEDD8-207ENST00000533242 VCAM1P19320 739 aa9.81□□□□□ -0.84
NEDD8-207ENST00000533242 DYNLL1P63167 89 aaKnown RBP9.81□□□□□ -0.84
NEDD8-207ENST00000533242 SMAD3P84022 425 aaKnown RBP9.81□□□□□ -0.84
NEDD8-207ENST00000533242 SHHQ15465 462 aa9.81□□□□□ -0.84
NEDD8-207ENST00000533242 ZYXQ15942 572 aaKnown RBP9.81□□□□□ -0.84
NEDD8-207ENST00000533242 TNNI3KQ59H18 835 aa9.81□□□□□ -0.84
NEDD8-207ENST00000533242 SLC39A5Q6ZMH5 540 aa9.81□□□□□ -0.84
NEDD8-207ENST00000533242 OSBPL3Q9H4L5 887 aa9.81□□□□□ -0.84
NEDD8-207ENST00000533242 ATP11BQ9Y2G3 1177 aa9.81□□□□□ -0.84
NEDD8-207ENST00000533242 FPGT-TNNI3KV9GXZ4 949 aa9.81□□□□□ -0.84
NEDD8-207ENST00000533242 PARP14Q460N5 1801 aa9.8□□□□□ -0.84
NEDD8-207ENST00000533242 KBTBD13C9JR72 458 aa9.8□□□□□ -0.84
NEDD8-207ENST00000533242 CYP7A1P22680 504 aa9.8□□□□□ -0.84
NEDD8-207ENST00000533242 CYP2C19P33261 490 aa9.8□□□□□ -0.84
NEDD8-207ENST00000533242 ATP8B2P98198 1209 aa9.8□□□□□ -0.84
NEDD8-207ENST00000533242 PKP1Q13835 747 aa9.8□□□□□ -0.84
NEDD8-207ENST00000533242 SNX17Q15036 470 aa9.8□□□□□ -0.84
NEDD8-207ENST00000533242 DBNDD2Q9BQY9 259 aa9.8□□□□□ -0.84
NEDD8-207ENST00000533242 PANK2Q9BZ23 570 aa9.8□□□□□ -0.84
NEDD8-207ENST00000533242 IL25Q9H293 177 aa9.8□□□□□ -0.84
NEDD8-207ENST00000533242 PIH1D3Q9NQM4 214 aaKnown RBP9.8□□□□□ -0.84
NEDD8-207ENST00000533242 MYH8P13535 1937 aa9.8□□□□□ -0.84
NEDD8-207ENST00000533242 CUL9Q8IWT3 2517 aa9.8□□□□□ -0.84
NEDD8-207ENST00000533242 FSD2A1L4K1 749 aa9.79□□□□□ -0.84
NEDD8-207ENST00000533242 SPDYE16A6NNV3 312 aaPredicted RBP9.79□□□□□ -0.84
NEDD8-207ENST00000533242 USP5P45974 858 aa9.79□□□□□ -0.84
NEDD8-207ENST00000533242 ABCB5Q2M3G0 1257 aa9.79□□□□□ -0.84
NEDD8-207ENST00000533242 GJC2Q5T442 439 aaPredicted RBP9.79□□□□□ -0.84
NEDD8-207ENST00000533242 SHCBP1Q8NEM2 672 aa9.79□□□□□ -0.84
NEDD8-207ENST00000533242 IL1RAPL2Q9NP60 686 aa9.79□□□□□ -0.84
NEDD8-207ENST00000533242 CABP5Q9NP86 173 aa9.79□□□□□ -0.84
NEDD8-207ENST00000533242 SERPINB13Q9UIV8 391 aa9.79□□□□□ -0.84
NEDD8-207ENST00000533242 STRNO43815 780 aa9.79□□□□□ -0.84
NEDD8-207ENST00000533242 ZAP70P43403 619 aa9.79□□□□□ -0.84
NEDD8-207ENST00000533242 CERKLQ49MI3 558 aaPredicted RBP9.79□□□□□ -0.84
NEDD8-207ENST00000533242 C9orf50Q5SZB4 431 aa9.79□□□□□ -0.84
NEDD8-207ENST00000533242 TMED8Q6PL24 325 aaPredicted RBP9.79□□□□□ -0.84
NEDD8-207ENST00000533242 DPP9Q86TI2 863 aa9.79□□□□□ -0.84
NEDD8-207ENST00000533242 TTC6Q86TZ1 520 aa9.79□□□□□ -0.84
NEDD8-207ENST00000533242 ACER1Q8TDN7 264 aa9.79□□□□□ -0.84
NEDD8-207ENST00000533242 LRRCC1Q9C099 1032 aa9.79□□□□□ -0.84
NEDD8-207ENST00000533242 RPAP3Q9H6T3 665 aaPredicted RBP9.79□□□□□ -0.84
NEDD8-207ENST00000533242 PLXNA1Q9UIW2 1896 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms