RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 FAM182BQ5T319 152 aa5.14□□□□□ -1.59
CD44-226ENST00000527889 NBPF10Q6P3W6 841 aaKnown RBP5.14□□□□□ -1.59
CD44-226ENST00000527889 NXPE4Q6UWF7 544 aa5.14□□□□□ -1.59
CD44-226ENST00000527889 KSR2Q6VAB6 950 aa5.14□□□□□ -1.59
CD44-226ENST00000527889 PRICKLE2Q7Z3G6 844 aa5.14□□□□□ -1.59
CD44-226ENST00000527889 ZNF438Q7Z4V0 828 aa5.14□□□□□ -1.59
CD44-226ENST00000527889 DNAJC10Q8IXB1 793 aa5.14□□□□□ -1.59
CD44-226ENST00000527889 SIRT2Q8IXJ6 389 aa5.14□□□□□ -1.59
CD44-226ENST00000527889 RASGRP4Q8TDF6 673 aa5.14□□□□□ -1.59
CD44-226ENST00000527889 HSH2DQ96JZ2 352 aa5.14□□□□□ -1.59
CD44-226ENST00000527889 SRCIN1Q9C0H9 1055 aa5.14□□□□□ -1.59
CD44-226ENST00000527889 NPHS2Q9NP85 383 aa5.14□□□□□ -1.59
CD44-226ENST00000527889 ZDHHC3Q9NYG2 299 aa5.14□□□□□ -1.59
CD44-226ENST00000527889 NXF1Q9UBU9 619 aaKnown RBP5.14□□□□□ -1.59
CD44-226ENST00000527889 WDR3Q9UNX4 943 aaKnown RBP eCLIP5.14□□□□□ -1.59
CD44-226ENST00000527889 FNDC3AQ9Y2H6 1198 aaKnown RBP5.14□□□□□ -1.59
CD44-226ENST00000527889 USP20Q9Y2K6 914 aa5.14□□□□□ -1.59
CD44-226ENST00000527889 MAP3K2Q9Y2U5 619 aa5.14□□□□□ -1.59
CD44-226ENST00000527889 GPC6Q9Y625 555 aaPredicted RBP5.14□□□□□ -1.59
CD44-226ENST00000527889 KCNMB2Q9Y691 235 aa5.14□□□□□ -1.59
CD44-226ENST00000527889 ERBB4Q15303 1308 aa5.14□□□□□ -1.59
CD44-226ENST00000527889 PDE4DIPQ5VU43 2346 aa5.14□□□□□ -1.59
CD44-226ENST00000527889 SLC35F4A4IF30 521 aa5.13□□□□□ -1.59
CD44-226ENST00000527889 PPFIA3O75145 1194 aa5.13□□□□□ -1.59
CD44-226ENST00000527889 PHACTR2O75167 634 aa5.13□□□□□ -1.59
CD44-226ENST00000527889 ARSDP51689 593 aa5.13□□□□□ -1.59
CD44-226ENST00000527889 POU4F2Q12837 409 aa5.13□□□□□ -1.59
CD44-226ENST00000527889 HDAC1Q13547 482 aaPredicted RBP5.13□□□□□ -1.59
CD44-226ENST00000527889 BMS1Q14692 1282 aaKnown RBP5.13□□□□□ -1.59
CD44-226ENST00000527889 GPR162Q16538 588 aa5.13□□□□□ -1.59
CD44-226ENST00000527889 CWF19L2Q2TBE0 894 aaKnown RBP5.13□□□□□ -1.59
CD44-226ENST00000527889 GNASQ5JWF2 1037 aa5.13□□□□□ -1.59
CD44-226ENST00000527889 BEND3Q5T5X7 828 aa5.13□□□□□ -1.59
CD44-226ENST00000527889 CEP85Q6P2H3 762 aa5.13□□□□□ -1.59
CD44-226ENST00000527889 TREML4Q6UXN2 200 aa5.13□□□□□ -1.59
CD44-226ENST00000527889 TTLL7Q6ZT98 887 aa5.13□□□□□ -1.59
CD44-226ENST00000527889 COPS6Q7L5N1 327 aa5.13□□□□□ -1.59
CD44-226ENST00000527889 PTF1AQ7RTS3 328 aa5.13□□□□□ -1.59
CD44-226ENST00000527889 LYSMD3Q7Z3D4 306 aa5.13□□□□□ -1.59
CD44-226ENST00000527889 LRP10Q7Z4F1 713 aa5.13□□□□□ -1.59
CD44-226ENST00000527889 JAZF1Q86VZ6 243 aa5.13□□□□□ -1.59
CD44-226ENST00000527889 GALNT12Q8IXK2 581 aa5.13□□□□□ -1.59
CD44-226ENST00000527889 ABHD8Q96I13 439 aa5.13□□□□□ -1.59
CD44-226ENST00000527889 MYD88Q99836 296 aa5.13□□□□□ -1.59
CD44-226ENST00000527889 BCO2Q9BYV7 579 aa5.13□□□□□ -1.59
CD44-226ENST00000527889 CHRDQ9H2X0 955 aa5.13□□□□□ -1.59
CD44-226ENST00000527889 CHMP4BQ9H444 224 aaKnown RBP5.13□□□□□ -1.59
CD44-226ENST00000527889 ELP3Q9H9T3 547 aa5.13□□□□□ -1.59
CD44-226ENST00000527889 KBTBD4Q9NVX7 518 aa5.13□□□□□ -1.59
CD44-226ENST00000527889 TMEM63CQ9P1W3 806 aa5.13□□□□□ -1.59
CD44-226ENST00000527889 RTCBQ9Y3I0 505 aaKnown RBP5.13□□□□□ -1.59
CD44-226ENST00000527889 LRRFIP2Q9Y608 721 aaKnown RBP5.13□□□□□ -1.59
CD44-226ENST00000527889 QSER1Q2KHR3 1735 aa5.13□□□□□ -1.59
CD44-226ENST00000527889 RGPD3A6NKT7 1758 aaPredicted RBP5.13□□□□□ -1.59
CD44-226ENST00000527889 RGPD4Q7Z3J3 1758 aa5.13□□□□□ -1.59
CD44-226ENST00000527889 GOLGB1Q14789 3259 aaKnown RBP5.13□□□□□ -1.59
CD44-226ENST00000527889 ANKRD31Q8N7Z5 1873 aa5.13□□□□□ -1.59
CD44-226ENST00000527889 TCHHQ07283 1943 aa5.13□□□□□ -1.59
CD44-226ENST00000527889 CACNA1AO00555 2505 aa5.13□□□□□ -1.59
CD44-226ENST00000527889 ARAP2Q8WZ64 1704 aa5.12□□□□□ -1.59
CD44-226ENST00000527889 WDR90Q96KV7 1748 aa5.12□□□□□ -1.59
CD44-226ENST00000527889 WFS1O76024 890 aa5.12□□□□□ -1.59
CD44-226ENST00000527889 DDX58O95786 925 aaKnown RBP5.12□□□□□ -1.59
CD44-226ENST00000527889 GNAI2P04899 355 aa5.12□□□□□ -1.59
CD44-226ENST00000527889 POLR3DP05423 398 aaPredicted RBP5.12□□□□□ -1.59
CD44-226ENST00000527889 UBTFL1P0CB47 393 aaPredicted RBP5.12□□□□□ -1.59
CD44-226ENST00000527889 GRNP28799 593 aaKnown RBP5.12□□□□□ -1.59
CD44-226ENST00000527889 SETQ01105 290 aaPredicted RBP5.12□□□□□ -1.59
CD44-226ENST00000527889 SERINC3Q13530 473 aa5.12□□□□□ -1.59
CD44-226ENST00000527889 TCEAL1Q15170 157 aa5.12□□□□□ -1.59
CD44-226ENST00000527889 CMTR1Q8N1G2 835 aaKnown RBP5.12□□□□□ -1.59
CD44-226ENST00000527889 CCDC155Q8N6L0 562 aa5.12□□□□□ -1.59
CD44-226ENST00000527889 ANKRD44Q8N8A2 993 aa5.12□□□□□ -1.59
CD44-226ENST00000527889 JARID2Q92833 1246 aaPredicted RBP5.12□□□□□ -1.59
CD44-226ENST00000527889 AIDAQ96BJ3 306 aa5.12□□□□□ -1.59
CD44-226ENST00000527889 RSRP1Q9BUV0 290 aa5.12□□□□□ -1.59
CD44-226ENST00000527889 USP44Q9H0E7 712 aa5.12□□□□□ -1.59
CD44-226ENST00000527889 NEUROD4Q9HD90 331 aa5.12□□□□□ -1.59
CD44-226ENST00000527889 PALLDQ8WX93 1383 aa5.12□□□□□ -1.59
CD44-226ENST00000527889 CUL9Q8IWT3 2517 aa5.11□□□□□ -1.59
CD44-226ENST00000527889 LOC102724428A0A0B4J2F2 783 aa5.11□□□□□ -1.59
CD44-226ENST00000527889 PNMA6EA0A0J9YXQ4 647 aa5.11□□□□□ -1.59
CD44-226ENST00000527889 NEURL1BA8MQ27 555 aa5.11□□□□□ -1.59
CD44-226ENST00000527889 SPATA31C2B4DYI2 1134 aa5.11□□□□□ -1.59
CD44-226ENST00000527889 EREGO14944 169 aa5.11□□□□□ -1.59
CD44-226ENST00000527889 GADD45BO75293 160 aaPredicted RBP5.11□□□□□ -1.59
CD44-226ENST00000527889 ALDH1L1O75891 902 aa5.11□□□□□ -1.59
CD44-226ENST00000527889 IGKV5-2P06315 115 aa5.11□□□□□ -1.59
CD44-226ENST00000527889 GNAI3P08754 354 aa5.11□□□□□ -1.59
CD44-226ENST00000527889 NBPF7P0C2Y1 421 aaPredicted RBP5.11□□□□□ -1.59
CD44-226ENST00000527889 CYP19A1P11511 503 aaPredicted RBP5.11□□□□□ -1.59
CD44-226ENST00000527889 KCNQ4P56696 695 aa5.11□□□□□ -1.59
CD44-226ENST00000527889 SIK1P57059 783 aa5.11□□□□□ -1.59
CD44-226ENST00000527889 ITPK1Q13572 414 aa5.11□□□□□ -1.59
CD44-226ENST00000527889 GRM2Q14416 872 aa5.11□□□□□ -1.59
CD44-226ENST00000527889 GLIPR1L2Q4G1C9 344 aa5.11□□□□□ -1.59
CD44-226ENST00000527889 SLC27A3Q5K4L6 730 aa5.11□□□□□ -1.59
CD44-226ENST00000527889 BTLAQ7Z6A9 289 aa5.11□□□□□ -1.59
CD44-226ENST00000527889 SMC5Q8IY18 1101 aa5.11□□□□□ -1.59
CD44-226ENST00000527889 PLBD2Q8NHP8 589 aa5.11□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms