RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 NUCB1Q02818 461 aa11.18□□□□□ -0.62
HDAC3-215ENST00000519474 CCDC129Q6ZRS4 1044 aa11.18□□□□□ -0.62
HDAC3-215ENST00000519474 CHD1LQ86WJ1 897 aa11.18□□□□□ -0.62
HDAC3-215ENST00000519474 SLAIN1Q8ND83 568 aa11.18□□□□□ -0.62
HDAC3-215ENST00000519474 GTF3C2Q8WUA4 911 aaPredicted RBP11.18□□□□□ -0.62
HDAC3-215ENST00000519474 USP6NLQ92738 828 aa11.18□□□□□ -0.62
HDAC3-215ENST00000519474 PAGR1Q9BTK6 254 aa11.18□□□□□ -0.62
HDAC3-215ENST00000519474 VCPKMTQ9H867 229 aa11.18□□□□□ -0.62
HDAC3-215ENST00000519474 MKNK2Q9HBH9 465 aa11.18□□□□□ -0.62
HDAC3-215ENST00000519474 ARPP21Q9UBL0 812 aaPredicted RBP11.18□□□□□ -0.62
HDAC3-215ENST00000519474 DDX60LQ5H9U9 1706 aaKnown RBP11.18□□□□□ -0.62
HDAC3-215ENST00000519474 SPDYE16A6NNV3 312 aaPredicted RBP11.17□□□□□ -0.62
HDAC3-215ENST00000519474 CYP2B6P20813 491 aa11.17□□□□□ -0.62
HDAC3-215ENST00000519474 DSG3P32926 999 aa11.17□□□□□ -0.62
HDAC3-215ENST00000519474 UBXN2AP68543 259 aa11.17□□□□□ -0.62
HDAC3-215ENST00000519474 ICA1Q05084 483 aa11.17□□□□□ -0.62
HDAC3-215ENST00000519474 MORN1Q5T089 497 aa11.17□□□□□ -0.62
HDAC3-215ENST00000519474 ZNF444Q8N0Y2 327 aaPredicted RBP11.17□□□□□ -0.62
HDAC3-215ENST00000519474 RNF208Q9H0X6 261 aa11.17□□□□□ -0.62
HDAC3-215ENST00000519474 UNC93B1Q9H1C4 597 aa11.17□□□□□ -0.62
HDAC3-215ENST00000519474 OSBPL3Q9H4L5 887 aa11.17□□□□□ -0.62
HDAC3-215ENST00000519474 ARHGEF10LQ9HCE6 1279 aa11.17□□□□□ -0.62
HDAC3-215ENST00000519474 INCENPQ9NQS7 918 aa11.17□□□□□ -0.62
HDAC3-215ENST00000519474 TACC3Q9Y6A5 838 aa11.17□□□□□ -0.62
HDAC3-215ENST00000519474 KIAA0100Q14667 2235 aaKnown RBP11.17□□□□□ -0.62
HDAC3-215ENST00000519474 MYH7P12883 1935 aa11.17□□□□□ -0.62
HDAC3-215ENST00000519474 IGKV6D-41A0A0C4DH26 115 aa11.16□□□□□ -0.62
HDAC3-215ENST00000519474 SGPL1O95470 568 aa11.16□□□□□ -0.62
HDAC3-215ENST00000519474 INHAP05111 366 aa11.16□□□□□ -0.62
HDAC3-215ENST00000519474 XRCC5P13010 732 aaKnown RBP11.16□□□□□ -0.62
HDAC3-215ENST00000519474 MAPK4P31152 587 aa11.16□□□□□ -0.62
HDAC3-215ENST00000519474 GJA8P48165 433 aa11.16□□□□□ -0.62
HDAC3-215ENST00000519474 TDO2P48775 406 aa11.16□□□□□ -0.62
HDAC3-215ENST00000519474 TRIM32Q13049 653 aa11.16□□□□□ -0.62
HDAC3-215ENST00000519474 GPR142Q7Z601 462 aa11.16□□□□□ -0.62
HDAC3-215ENST00000519474 PLEKHH3Q7Z736 793 aa11.16□□□□□ -0.62
HDAC3-215ENST00000519474 TICAM2Q86XR7 235 aa11.16□□□□□ -0.62
HDAC3-215ENST00000519474 SPICE1Q8N0Z3 855 aa11.16□□□□□ -0.62
HDAC3-215ENST00000519474 LPAR1Q92633 364 aa11.16□□□□□ -0.62
HDAC3-215ENST00000519474 MKL1Q969V6 931 aa11.16□□□□□ -0.62
HDAC3-215ENST00000519474 FAM227BQ96M60 508 aa11.16□□□□□ -0.62
HDAC3-215ENST00000519474 NUDT12Q9BQG2 462 aa11.16□□□□□ -0.62
HDAC3-215ENST00000519474 HELLSQ9NRZ9 838 aa11.16□□□□□ -0.62
HDAC3-215ENST00000519474 NYAP2Q9P242 653 aa11.16□□□□□ -0.62
HDAC3-215ENST00000519474 ADAMTS5Q9UNA0 930 aa11.16□□□□□ -0.62
HDAC3-215ENST00000519474 NAV1Q8NEY1 1877 aa11.15□□□□□ -0.62
HDAC3-215ENST00000519474 PRDM1O75626 825 aa11.15□□□□□ -0.62
HDAC3-215ENST00000519474 IRX6P78412 446 aaPredicted RBP11.15□□□□□ -0.62
HDAC3-215ENST00000519474 ATP2B2Q01814 1243 aa11.15□□□□□ -0.62
HDAC3-215ENST00000519474 PDE4CQ08493 712 aa11.15□□□□□ -0.62
HDAC3-215ENST00000519474 ALX1Q15699 326 aa11.15□□□□□ -0.62
HDAC3-215ENST00000519474 VPS53Q5VIR6 699 aa11.15□□□□□ -0.62
HDAC3-215ENST00000519474 RILPL2Q969X0 211 aa11.15□□□□□ -0.62
HDAC3-215ENST00000519474 SHISA4Q96DD7 197 aa11.15□□□□□ -0.62
HDAC3-215ENST00000519474 NACAP1Q9BZK3 213 aa11.15□□□□□ -0.62
HDAC3-215ENST00000519474 CLIP2Q9UDT6 1046 aa11.15□□□□□ -0.62
HDAC3-215ENST00000519474 TRIM6-TRIM34B2RNG4 842 aa11.14□□□□□ -0.63
HDAC3-215ENST00000519474 F5H6K3 240 aa11.14□□□□□ -0.63
HDAC3-215ENST00000519474 FGAP02671 866 aa11.14□□□□□ -0.63
HDAC3-215ENST00000519474 SDSP20132 328 aa11.14□□□□□ -0.63
HDAC3-215ENST00000519474 PTPREP23469 700 aa11.14□□□□□ -0.63
HDAC3-215ENST00000519474 CCNA1P78396 465 aa11.14□□□□□ -0.63
HDAC3-215ENST00000519474 CTDSPL2Q05D32 466 aa11.14□□□□□ -0.63
HDAC3-215ENST00000519474 KLRC3Q07444 240 aa11.14□□□□□ -0.63
HDAC3-215ENST00000519474 PPARAQ07869 468 aa11.14□□□□□ -0.63
HDAC3-215ENST00000519474 CCL14Q16627 93 aa11.14□□□□□ -0.63
HDAC3-215ENST00000519474 MCMDC2Q4G0Z9 681 aa11.14□□□□□ -0.63
HDAC3-215ENST00000519474 TPRNQ4KMQ1 711 aa11.14□□□□□ -0.63
HDAC3-215ENST00000519474 FAM47AQ5JRC9 791 aa11.14□□□□□ -0.63
HDAC3-215ENST00000519474 UBE2Q1Q7Z7E8 422 aa11.14□□□□□ -0.63
HDAC3-215ENST00000519474 CCAR1Q8IX12 1150 aaKnown RBP11.14□□□□□ -0.63
HDAC3-215ENST00000519474 NEDD1Q8NHV4 660 aa11.14□□□□□ -0.63
HDAC3-215ENST00000519474 NKX2-3Q8TAU0 364 aa11.14□□□□□ -0.63
HDAC3-215ENST00000519474 U2AF1L4Q8WU68 220 aaKnown RBP11.14□□□□□ -0.63
HDAC3-215ENST00000519474 ATG4CQ96DT6 458 aa11.14□□□□□ -0.63
HDAC3-215ENST00000519474 MOV10L1Q9BXT6 1211 aaKnown RBP11.14□□□□□ -0.63
HDAC3-215ENST00000519474 NAPBQ9H115 298 aa11.14□□□□□ -0.63
HDAC3-215ENST00000519474 SH2D4AQ9H788 454 aa11.14□□□□□ -0.63
HDAC3-215ENST00000519474 FBXO28Q9NVF7 368 aa11.14□□□□□ -0.63
HDAC3-215ENST00000519474 MTMR4Q9NYA4 1195 aa11.14□□□□□ -0.63
HDAC3-215ENST00000519474 ROBO3Q96MS0 1386 aa11.14□□□□□ -0.63
HDAC3-215ENST00000519474 RPTORQ8N122 1335 aa11.13□□□□□ -0.63
HDAC3-215ENST00000519474 A0A0D9SFI3 127 aa11.13□□□□□ -0.63
HDAC3-215ENST00000519474 SLC15A5A6NIM6 579 aa11.13□□□□□ -0.63
HDAC3-215ENST00000519474 WDR46O15213 610 aaKnown RBP11.13□□□□□ -0.63
HDAC3-215ENST00000519474 FLOT1O75955 427 aa11.13□□□□□ -0.63
HDAC3-215ENST00000519474 TFRCP02786 760 aaKnown RBP11.13□□□□□ -0.63
HDAC3-215ENST00000519474 FGRP09769 529 aa11.13□□□□□ -0.63
HDAC3-215ENST00000519474 PDE4AP27815 886 aa11.13□□□□□ -0.63
HDAC3-215ENST00000519474 TFAP4Q01664 338 aa11.13□□□□□ -0.63
HDAC3-215ENST00000519474 MAP2K5Q13163 448 aa11.13□□□□□ -0.63
HDAC3-215ENST00000519474 NMIQ13287 307 aaPredicted RBP11.13□□□□□ -0.63
HDAC3-215ENST00000519474 NPLOC4Q8TAT6 608 aa11.13□□□□□ -0.63
HDAC3-215ENST00000519474 TRIB2Q92519 343 aa11.13□□□□□ -0.63
HDAC3-215ENST00000519474 DEFB118Q96PH6 123 aa11.13□□□□□ -0.63
HDAC3-215ENST00000519474 TANGO6Q9C0B7 1094 aa11.13□□□□□ -0.63
HDAC3-215ENST00000519474 SPATC1LQ9H0A9 340 aa11.13□□□□□ -0.63
HDAC3-215ENST00000519474 CRISPLD2Q9H0B8 497 aa11.13□□□□□ -0.63
HDAC3-215ENST00000519474 ZNF287Q9HBT7 754 aa11.13□□□□□ -0.63
HDAC3-215ENST00000519474 PAK6Q9NQU5 681 aaPredicted RBP11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms