RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 KAT14Q9H8E8 782 aa17.58■□□□□ 0.4
NUP54-213ENST00000513352 CYP46A1Q9Y6A2 500 aa17.58■□□□□ 0.4
NUP54-213ENST00000513352 A0A0G2JLL6 359 aaPredicted RBP17.57■□□□□ 0.4
NUP54-213ENST00000513352 C19orf81C9J6K1 198 aa17.57■□□□□ 0.4
NUP54-213ENST00000513352 TOP1P11387 765 aaKnown RBP17.57■□□□□ 0.4
NUP54-213ENST00000513352 SREBF2Q12772 1141 aa17.57■□□□□ 0.4
NUP54-213ENST00000513352 NFXL1Q6ZNB6 911 aa17.57■□□□□ 0.4
NUP54-213ENST00000513352 PRRT2Q7Z6L0 340 aaPredicted RBP17.57■□□□□ 0.4
NUP54-213ENST00000513352 SIAH1Q8IUQ4 282 aa17.57■□□□□ 0.4
NUP54-213ENST00000513352 SPICE1Q8N0Z3 855 aa17.57■□□□□ 0.4
NUP54-213ENST00000513352 ZIC5Q96T25 663 aa17.57■□□□□ 0.4
NUP54-213ENST00000513352 TMX2Q9Y320 296 aa17.57■□□□□ 0.4
NUP54-213ENST00000513352 RPS6KB1P23443 525 aa17.56■□□□□ 0.4
NUP54-213ENST00000513352 FASTKD5Q7L8L6 764 aaKnown RBP17.56■□□□□ 0.4
NUP54-213ENST00000513352 DGKHQ86XP1 1220 aa17.56■□□□□ 0.4
NUP54-213ENST00000513352 BRI3BPQ8WY22 251 aa17.56■□□□□ 0.4
NUP54-213ENST00000513352 MS4A4AQ96JQ5 239 aa17.56■□□□□ 0.4
NUP54-213ENST00000513352 TMEM87BQ96K49 555 aa17.56■□□□□ 0.4
NUP54-213ENST00000513352 TTC14Q96N46 770 aa17.56■□□□□ 0.4
NUP54-213ENST00000513352 TMEM47Q9BQJ4 181 aa17.56■□□□□ 0.4
NUP54-213ENST00000513352 VCPKMTQ9H867 229 aa17.56■□□□□ 0.4
NUP54-213ENST00000513352 GPHNQ9NQX3 736 aaPredicted RBP17.56■□□□□ 0.4
NUP54-213ENST00000513352 LOC285556D6RIA3 1793 aa17.56■□□□□ 0.4
NUP54-213ENST00000513352 WDR19Q8NEZ3 1342 aa17.55■□□□□ 0.4
NUP54-213ENST00000513352 SEC23AQ15436 765 aa17.55■□□□□ 0.4
NUP54-213ENST00000513352 RCSD1Q6JBY9 416 aa17.55■□□□□ 0.4
NUP54-213ENST00000513352 RUFY3Q7L099 469 aa17.55■□□□□ 0.4
NUP54-213ENST00000513352 TBC1D32Q96NH3 1257 aa17.55■□□□□ 0.4
NUP54-213ENST00000513352 TM6SF1Q9BZW5 370 aa17.55■□□□□ 0.4
NUP54-213ENST00000513352 EMILIN3Q9NT22 766 aa17.55■□□□□ 0.4
NUP54-213ENST00000513352 NAP1L2Q9ULW6 460 aaPredicted RBP17.55■□□□□ 0.4
NUP54-213ENST00000513352 CCDC69A6NI79 296 aa17.54■□□□□ 0.4
NUP54-213ENST00000513352 SH2B2O14492 632 aaPredicted RBP17.54■□□□□ 0.4
NUP54-213ENST00000513352 NDUFB10O96000 172 aa17.54■□□□□ 0.4
NUP54-213ENST00000513352 RBM25P49756 843 aaKnown RBP17.54■□□□□ 0.4
NUP54-213ENST00000513352 EXOSC10Q01780 885 aaKnown RBP17.54■□□□□ 0.4
NUP54-213ENST00000513352 CCDC96Q2M329 555 aa17.54■□□□□ 0.4
NUP54-213ENST00000513352 SH3D19Q5HYK7 790 aa17.54■□□□□ 0.4
NUP54-213ENST00000513352 SLFN13Q68D06 897 aa17.54■□□□□ 0.4
NUP54-213ENST00000513352 SAMD1Q6SPF0 538 aaPredicted RBP17.54■□□□□ 0.4
NUP54-213ENST00000513352 Q6ZUG5 572 aa17.54■□□□□ 0.4
NUP54-213ENST00000513352 PROCA1Q8NCQ7 364 aaPredicted RBP17.54■□□□□ 0.4
NUP54-213ENST00000513352 PNMA1Q8ND90 353 aa17.54■□□□□ 0.4
NUP54-213ENST00000513352 IGDCC4Q8TDY8 1250 aa17.54■□□□□ 0.4
NUP54-213ENST00000513352 ZSWIM6Q9HCJ5 1215 aa17.54■□□□□ 0.4
NUP54-213ENST00000513352 PDRG1Q9NUG6 133 aa17.54■□□□□ 0.4
NUP54-213ENST00000513352 BTBD19C9JJ37 291 aa17.53■□□□□ 0.4
NUP54-213ENST00000513352 F5H6K3 240 aa17.53■□□□□ 0.4
NUP54-213ENST00000513352 VCAM1P19320 739 aa17.53■□□□□ 0.4
NUP54-213ENST00000513352 KLRC3Q07444 240 aa17.53■□□□□ 0.4
NUP54-213ENST00000513352 KIAA1755Q5JYT7 1200 aa17.53■□□□□ 0.4
NUP54-213ENST00000513352 TREML2Q5T2D2 321 aa17.53■□□□□ 0.4
NUP54-213ENST00000513352 LPAR1Q92633 364 aa17.53■□□□□ 0.4
NUP54-213ENST00000513352 MKL1Q969V6 931 aa17.53■□□□□ 0.4
NUP54-213ENST00000513352 NUP88Q99567 741 aaPredicted RBP17.53■□□□□ 0.4
NUP54-213ENST00000513352 MTA3Q9BTC8 594 aa17.53■□□□□ 0.4
NUP54-213ENST00000513352 TANGO6Q9C0B7 1094 aa17.53■□□□□ 0.4
NUP54-213ENST00000513352 LY9Q9HBG7 655 aa17.53■□□□□ 0.4
NUP54-213ENST00000513352 SENP2Q9HC62 589 aa17.53■□□□□ 0.4
NUP54-213ENST00000513352 SYNPO2Q9UMS6 1093 aa17.53■□□□□ 0.4
NUP54-213ENST00000513352 AGTPBP1Q9UPW5 1226 aa17.53■□□□□ 0.4
NUP54-213ENST00000513352 MAP2K2P36507 400 aa17.52■□□□□ 0.4
NUP54-213ENST00000513352 NOVP48745 357 aa17.52■□□□□ 0.4
NUP54-213ENST00000513352 NEK4P51957 841 aa17.52■□□□□ 0.4
NUP54-213ENST00000513352 INHBEP58166 350 aa17.52■□□□□ 0.4
NUP54-213ENST00000513352 IKQ13123 557 aaPredicted RBP17.52■□□□□ 0.4
NUP54-213ENST00000513352 FAM83BQ5T0W9 1011 aa17.52■□□□□ 0.4
NUP54-213ENST00000513352 OTUD7BQ6GQQ9 843 aa17.52■□□□□ 0.4
NUP54-213ENST00000513352 RASGRP2Q7LDG7 609 aa17.52■□□□□ 0.4
NUP54-213ENST00000513352 CATIPQ7Z7H3 387 aa17.52■□□□□ 0.4
NUP54-213ENST00000513352 TMTC2Q8N394 836 aa17.52■□□□□ 0.4
NUP54-213ENST00000513352 GMCL1P1Q8NEA9 526 aa17.52■□□□□ 0.4
NUP54-213ENST00000513352 C12orf42Q96LP6 360 aa17.52■□□□□ 0.4
NUP54-213ENST00000513352 RPAP3Q9H6T3 665 aaPredicted RBP17.52■□□□□ 0.4
NUP54-213ENST00000513352 THSD7BQ9C0I4 1608 aa17.51■□□□□ 0.39
NUP54-213ENST00000513352 PDHXO00330 501 aa17.51■□□□□ 0.39
NUP54-213ENST00000513352 WDR46O15213 610 aaKnown RBP17.51■□□□□ 0.39
NUP54-213ENST00000513352 SLC1A4P43007 532 aa17.51■□□□□ 0.39
NUP54-213ENST00000513352 IRX3P78415 501 aaPredicted RBP17.51■□□□□ 0.39
NUP54-213ENST00000513352 PABPC4Q13310 644 aaKnown RBP eCLIP17.51■□□□□ 0.39
NUP54-213ENST00000513352 MOGSQ13724 837 aa17.51■□□□□ 0.39
NUP54-213ENST00000513352 SYNE3Q6ZMZ3 975 aa17.51■□□□□ 0.39
NUP54-213ENST00000513352 ANKRD23Q86SG2 305 aa17.51■□□□□ 0.39
NUP54-213ENST00000513352 IFNL1Q8IU54 200 aa17.51■□□□□ 0.39
NUP54-213ENST00000513352 REM2Q8IYK8 340 aaPredicted RBP17.51■□□□□ 0.39
NUP54-213ENST00000513352 FAM43AQ8N2R8 423 aa17.51■□□□□ 0.39
NUP54-213ENST00000513352 NUP133Q8WUM0 1156 aa17.51■□□□□ 0.39
NUP54-213ENST00000513352 ANKS1AQ92625 1134 aa17.51■□□□□ 0.39
NUP54-213ENST00000513352 BRF1Q92994 677 aa17.51■□□□□ 0.39
NUP54-213ENST00000513352 FRMPD2Q68DX3 1309 aaPredicted RBP17.5■□□□□ 0.39
NUP54-213ENST00000513352 TESPA1A2RU30 521 aaPredicted RBP17.5■□□□□ 0.39
NUP54-213ENST00000513352 USP17L15C9J2P7 530 aa17.5■□□□□ 0.39
NUP54-213ENST00000513352 USP17L13C9JLJ4 530 aa17.5■□□□□ 0.39
NUP54-213ENST00000513352 USP17L11C9JVI0 530 aa17.5■□□□□ 0.39
NUP54-213ENST00000513352 USP17L18D6R9N7 530 aa17.5■□□□□ 0.39
NUP54-213ENST00000513352 USP17L22D6RA61 530 aa17.5■□□□□ 0.39
NUP54-213ENST00000513352 USP17L17D6RBQ6 530 aa17.5■□□□□ 0.39
NUP54-213ENST00000513352 USP17L19D6RCP7 530 aa17.5■□□□□ 0.39
NUP54-213ENST00000513352 USP17L20D6RJB6 530 aa17.5■□□□□ 0.39
NUP54-213ENST00000513352 IGF2BP3O00425 579 aaKnown RBP eCLIP17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms