RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 NKRFO15226 690 aaKnown RBP eCLIP8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 SMIM24O75264 130 aa8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 PPP1R37O75864 691 aa8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 ALDH1L1O75891 902 aa8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 MOCS3O95396 460 aa8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 GLI1P08151 1106 aa8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 GNAT1P11488 350 aa8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 SSR1P43307 286 aaKnown RBP8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 RPS6KA3P51812 740 aa8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 FKBP4Q02790 459 aaKnown RBP eCLIP8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 NR5A1Q13285 461 aa8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 SLC39A14Q15043 492 aa8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 WASHC4Q2M389 1173 aa8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 EAPPQ56P03 285 aaPredicted RBP8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 TRAPPC11Q7Z392 1133 aa8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 CPLX4Q7Z7G2 160 aa8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 KLHL7Q8IXQ5 586 aa8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 ARL10Q8N8L6 244 aa8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 ABHD10Q9NUJ1 306 aa8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 CD163L1Q9NR16 1453 aa8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 NRXN1Q9ULB1 1477 aa8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 TTC26A0AVF1 554 aa8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 SPDYE5A6NIY4 337 aa8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 NDUFA10O95299 355 aa8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 ZNF18P17022 549 aa8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 HLTFQ14527 1009 aaKnown RBP eCLIP8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 TTC39AQ5SRH9 613 aa8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 KRT40Q6A162 431 aa8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 LONP2Q86WA8 852 aa8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 NUTM2AQ8IVF1 878 aaPredicted RBP8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 CCDC170Q8IYT3 715 aa8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 CEP120Q8N960 986 aa8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 AGAP11Q8TF27 550 aa8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 HVCN1Q96D96 273 aa8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 NUCKS1Q9H1E3 243 aaKnown RBP8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 WWC3Q9ULE0 1092 aa8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 TRPC6Q9Y210 931 aa8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 CD2APQ9Y5K6 639 aa8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 MAST1Q9Y2H9 1570 aa8.1□□□□□ -1.11
LIMCH1-207ENST00000508466 ATP6V1G2O95670 118 aa8.1□□□□□ -1.11
LIMCH1-207ENST00000508466 PYGBP11216 843 aa8.1□□□□□ -1.11
LIMCH1-207ENST00000508466 GUCY1A2P33402 732 aa8.1□□□□□ -1.11
LIMCH1-207ENST00000508466 IFNAR2P48551 515 aa8.1□□□□□ -1.11
LIMCH1-207ENST00000508466 MRPL12P52815 198 aaKnown RBP8.1□□□□□ -1.11
LIMCH1-207ENST00000508466 HERVK_113P62684 666 aa8.1□□□□□ -1.11
LIMCH1-207ENST00000508466 KCNJ2P63252 427 aa8.1□□□□□ -1.11
LIMCH1-207ENST00000508466 RBBP5Q15291 538 aaKnown RBP8.1□□□□□ -1.11
LIMCH1-207ENST00000508466 CCDC96Q2M329 555 aa8.1□□□□□ -1.11
LIMCH1-207ENST00000508466 FNBP4Q8N3X1 1017 aaPredicted RBP8.1□□□□□ -1.11
LIMCH1-207ENST00000508466 SPAG5Q96R06 1193 aa8.1□□□□□ -1.11
LIMCH1-207ENST00000508466 MTFR1LQ9H019 292 aa8.1□□□□□ -1.11
LIMCH1-207ENST00000508466 LMCD1Q9NZU5 365 aa8.1□□□□□ -1.11
LIMCH1-207ENST00000508466 FAM184BQ9ULE4 1060 aa8.1□□□□□ -1.11
LIMCH1-207ENST00000508466 AOX1Q06278 1338 aa8.1□□□□□ -1.11
LIMCH1-207ENST00000508466 RAB27AP51159 221 aa8.1□□□□□ -1.11
LIMCH1-207ENST00000508466 ELF3P78545 371 aaPredicted RBP8.1□□□□□ -1.11
LIMCH1-207ENST00000508466 ZKSCAN3Q9BRR0 538 aa8.1□□□□□ -1.11
LIMCH1-207ENST00000508466 TSGA10Q9BZW7 698 aa8.1□□□□□ -1.11
LIMCH1-207ENST00000508466 GOLPH3Q9H4A6 298 aa8.1□□□□□ -1.11
LIMCH1-207ENST00000508466 MLXIPLQ9NP71 852 aa8.1□□□□□ -1.11
LIMCH1-207ENST00000508466 RBM12Q9NTZ6 932 aaKnown RBP8.1□□□□□ -1.11
LIMCH1-207ENST00000508466 LRWD1Q9UFC0 647 aa8.1□□□□□ -1.11
LIMCH1-207ENST00000508466 CDK12Q9NYV4 1490 aaPredicted RBP8.1□□□□□ -1.11
LIMCH1-207ENST00000508466 A0A087X0B3 334 aa8.09□□□□□ -1.11
LIMCH1-207ENST00000508466 TLDC2A0PJX2 215 aa8.09□□□□□ -1.11
LIMCH1-207ENST00000508466 ATP5J2-PTCD1G3V325 749 aa8.09□□□□□ -1.11
LIMCH1-207ENST00000508466 PRC1O43663 620 aa8.09□□□□□ -1.11
LIMCH1-207ENST00000508466 EVI5O60447 810 aa8.09□□□□□ -1.11
LIMCH1-207ENST00000508466 PTCD1O75127 700 aaKnown RBP8.09□□□□□ -1.11
LIMCH1-207ENST00000508466 MKRN4PQ13434 485 aaPredicted RBP8.09□□□□□ -1.11
LIMCH1-207ENST00000508466 KRT31Q15323 416 aa8.09□□□□□ -1.11
LIMCH1-207ENST00000508466 MCMDC2Q4G0Z9 681 aa8.09□□□□□ -1.11
LIMCH1-207ENST00000508466 ANKRD20A8PQ5CZ79 823 aa8.09□□□□□ -1.11
LIMCH1-207ENST00000508466 AENQ8WTP8 325 aaKnown RBP8.09□□□□□ -1.11
LIMCH1-207ENST00000508466 KAZALD1Q96I82 304 aa8.09□□□□□ -1.11
LIMCH1-207ENST00000508466 SEC16BQ96JE7 1060 aa8.09□□□□□ -1.11
LIMCH1-207ENST00000508466 PANX2Q96RD6 677 aa8.09□□□□□ -1.11
LIMCH1-207ENST00000508466 TRIM31Q9BZY9 425 aa8.09□□□□□ -1.11
LIMCH1-207ENST00000508466 VIPAS39Q9H9C1 493 aa8.09□□□□□ -1.11
LIMCH1-207ENST00000508466 POLR3EQ9NVU0 708 aa8.09□□□□□ -1.11
LIMCH1-207ENST00000508466 CNOT8Q9UFF9 292 aaKnown RBP8.09□□□□□ -1.11
LIMCH1-207ENST00000508466 PCDHB6Q9Y5E3 794 aa8.09□□□□□ -1.11
LIMCH1-207ENST00000508466 A0A1B0GTH6 734 aa8.09□□□□□ -1.11
LIMCH1-207ENST00000508466 TULP1O00294 542 aaPredicted RBP8.09□□□□□ -1.11
LIMCH1-207ENST00000508466 OPA1O60313 960 aa8.09□□□□□ -1.11
LIMCH1-207ENST00000508466 ADAMTS2O95450 1211 aa8.09□□□□□ -1.11
LIMCH1-207ENST00000508466 LINGO3P0C6S8 592 aa8.09□□□□□ -1.11
LIMCH1-207ENST00000508466 MDH1P40925 334 aaKnown RBP8.09□□□□□ -1.11
LIMCH1-207ENST00000508466 AMPHP49418 695 aa8.09□□□□□ -1.11
LIMCH1-207ENST00000508466 ZC3H6P61129 1189 aaKnown RBP8.09□□□□□ -1.11
LIMCH1-207ENST00000508466 HSP90AB4PQ58FF6 505 aa8.09□□□□□ -1.11
LIMCH1-207ENST00000508466 FBXO31Q5XUX0 539 aaPredicted RBP8.09□□□□□ -1.11
LIMCH1-207ENST00000508466 APTXQ7Z2E3 356 aaKnown RBP8.09□□□□□ -1.11
LIMCH1-207ENST00000508466 ERICH1Q86X53 443 aa8.09□□□□□ -1.11
LIMCH1-207ENST00000508466 RPUSD2Q8IZ73 545 aaKnown RBP8.09□□□□□ -1.11
LIMCH1-207ENST00000508466 EYA1Q99502 592 aa8.09□□□□□ -1.11
LIMCH1-207ENST00000508466 ADD3Q9UEY8 706 aaKnown RBP8.09□□□□□ -1.11
LIMCH1-207ENST00000508466 TTF2Q9UNY4 1162 aaKnown RBP8.09□□□□□ -1.11
LIMCH1-207ENST00000508466 CAPN6Q9Y6Q1 641 aa8.09□□□□□ -1.11
LIMCH1-207ENST00000508466 REREQ9P2R6 1566 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms