RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 TEKT1Q969V4 418 aa8.19□□□□□ -1.1
VPS52-219ENST00000493379 PBXIP1Q96AQ6 731 aa8.19□□□□□ -1.1
VPS52-219ENST00000493379 LRFN3Q9BTN0 628 aa8.19□□□□□ -1.1
VPS52-219ENST00000493379 IDI2Q9BXS1 227 aa8.19□□□□□ -1.1
VPS52-219ENST00000493379 PPP1R12CQ9BZL4 782 aa8.19□□□□□ -1.1
VPS52-219ENST00000493379 ECHDC1Q9NTX5 307 aa8.19□□□□□ -1.1
VPS52-219ENST00000493379 PPP2R3BQ9Y5P8 575 aa8.19□□□□□ -1.1
VPS52-219ENST00000493379 TTC41PQ6P2S7 1318 aa8.19□□□□□ -1.1
VPS52-219ENST00000493379 CACNA1BQ00975 2339 aa8.19□□□□□ -1.1
VPS52-219ENST00000493379 UNCXA6NJT0 531 aa8.18□□□□□ -1.1
VPS52-219ENST00000493379 SMARCA5O60264 1052 aaPredicted RBP8.18□□□□□ -1.1
VPS52-219ENST00000493379 LDHCP07864 332 aa8.18□□□□□ -1.1
VPS52-219ENST00000493379 MAP3K10Q02779 954 aa8.18□□□□□ -1.1
VPS52-219ENST00000493379 MECOMQ03112 1051 aa8.18□□□□□ -1.1
VPS52-219ENST00000493379 SREBF2Q12772 1141 aa8.18□□□□□ -1.1
VPS52-219ENST00000493379 TTF1Q15361 905 aaPredicted RBP8.18□□□□□ -1.1
VPS52-219ENST00000493379 ANGEL2Q5VTE6 544 aaKnown RBP8.18□□□□□ -1.1
VPS52-219ENST00000493379 FAM83AQ86UY5 434 aa8.18□□□□□ -1.1
VPS52-219ENST00000493379 USP38Q8NB14 1042 aa8.18□□□□□ -1.1
VPS52-219ENST00000493379 PNMA1Q8ND90 353 aa8.18□□□□□ -1.1
VPS52-219ENST00000493379 PI4K2BQ8TCG2 481 aa8.18□□□□□ -1.1
VPS52-219ENST00000493379 UCN2Q96RP3 112 aa8.18□□□□□ -1.1
VPS52-219ENST00000493379 GGA3Q9NZ52 723 aa8.18□□□□□ -1.1
VPS52-219ENST00000493379 ZNF70Q9UC06 446 aaPredicted RBP8.18□□□□□ -1.1
VPS52-219ENST00000493379 JAG2Q9Y219 1238 aa8.18□□□□□ -1.1
VPS52-219ENST00000493379 DAGLAQ9Y4D2 1042 aa8.18□□□□□ -1.1
VPS52-219ENST00000493379 PCDHAC2Q9Y5I4 1007 aa8.18□□□□□ -1.1
VPS52-219ENST00000493379 AOX1Q06278 1338 aa8.18□□□□□ -1.1
VPS52-219ENST00000493379 PALM3A6NDB9 673 aaPredicted RBP8.17□□□□□ -1.1
VPS52-219ENST00000493379 IGF2BP3O00425 579 aaKnown RBP eCLIP8.17□□□□□ -1.1
VPS52-219ENST00000493379 MYO1BO43795 1136 aa8.17□□□□□ -1.1
VPS52-219ENST00000493379 F12P00748 615 aaPredicted RBP8.17□□□□□ -1.1
VPS52-219ENST00000493379 CENPBP07199 599 aaPredicted RBP8.17□□□□□ -1.1
VPS52-219ENST00000493379 JUNDP17535 347 aa8.17□□□□□ -1.1
VPS52-219ENST00000493379 SYN1P17600 705 aa8.17□□□□□ -1.1
VPS52-219ENST00000493379 RFX1P22670 979 aa8.17□□□□□ -1.1
VPS52-219ENST00000493379 RHBDL3P58872 404 aa8.17□□□□□ -1.1
VPS52-219ENST00000493379 GSTO1P78417 241 aa8.17□□□□□ -1.1
VPS52-219ENST00000493379 MAP3K11Q16584 847 aa8.17□□□□□ -1.1
VPS52-219ENST00000493379 ANKRD45Q5TZF3 282 aa8.17□□□□□ -1.1
VPS52-219ENST00000493379 PRAMEF18Q5VWM3 479 aa8.17□□□□□ -1.1
VPS52-219ENST00000493379 TBC1D9Q6ZT07 1266 aa8.17□□□□□ -1.1
VPS52-219ENST00000493379 CHD1LQ86WJ1 897 aa8.17□□□□□ -1.1
VPS52-219ENST00000493379 APOBEC3FQ8IUX4 373 aaKnown RBP8.17□□□□□ -1.1
VPS52-219ENST00000493379 TEPSINQ96N21 525 aa8.17□□□□□ -1.1
VPS52-219ENST00000493379 ANTXR1Q9H6X2 564 aa8.17□□□□□ -1.1
VPS52-219ENST00000493379 PIH1D3Q9NQM4 214 aaKnown RBP8.17□□□□□ -1.1
VPS52-219ENST00000493379 ZDBF2Q9HCK1 2354 aa8.17□□□□□ -1.1
VPS52-219ENST00000493379 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.16□□□□□ -1.1
VPS52-219ENST00000493379 MROH7-TTC4A0A0A0MT08 1334 aa8.16□□□□□ -1.1
VPS52-219ENST00000493379 TCRBV5S4A2TA0A5A2 114 aa8.16□□□□□ -1.1
VPS52-219ENST00000493379 F8W031 263 aaPredicted RBP8.16□□□□□ -1.1
VPS52-219ENST00000493379 ENTPD3O75355 529 aa8.16□□□□□ -1.1
VPS52-219ENST00000493379 GLRX3O76003 335 aaKnown RBP8.16□□□□□ -1.1
VPS52-219ENST00000493379 FARP2O94887 1054 aaPredicted RBP8.16□□□□□ -1.1
VPS52-219ENST00000493379 MAGEA10P43363 369 aaPredicted RBP8.16□□□□□ -1.1
VPS52-219ENST00000493379 PDE1AP54750 535 aa8.16□□□□□ -1.1
VPS52-219ENST00000493379 FKBP1BP68106 108 aa8.16□□□□□ -1.1
VPS52-219ENST00000493379 SEMA3FQ13275 785 aa8.16□□□□□ -1.1
VPS52-219ENST00000493379 CRHR2Q13324 411 aa8.16□□□□□ -1.1
VPS52-219ENST00000493379 TNFAIP1Q13829 316 aa8.16□□□□□ -1.1
VPS52-219ENST00000493379 UBE3CQ15386 1083 aa8.16□□□□□ -1.1
VPS52-219ENST00000493379 PTPRNQ16849 979 aa8.16□□□□□ -1.1
VPS52-219ENST00000493379 RFX7Q2KHR2 1363 aa8.16□□□□□ -1.1
VPS52-219ENST00000493379 CDC42EP5Q6NZY7 148 aa8.16□□□□□ -1.1
VPS52-219ENST00000493379 CERS3Q8IU89 383 aa8.16□□□□□ -1.1
VPS52-219ENST00000493379 PLEKHM2Q8IWE5 1019 aa8.16□□□□□ -1.1
VPS52-219ENST00000493379 DEFB129Q9H1M3 183 aa8.16□□□□□ -1.1
VPS52-219ENST00000493379 TDRD3Q9H7E2 651 aaKnown RBP8.16□□□□□ -1.1
VPS52-219ENST00000493379 LRP2BPQ9P2M1 347 aa8.16□□□□□ -1.1
VPS52-219ENST00000493379 ABCF2Q9UG63 623 aa8.16□□□□□ -1.1
VPS52-219ENST00000493379 FKBPLQ9UIM3 349 aa8.16□□□□□ -1.1
VPS52-219ENST00000493379 TCF20Q9UGU0 1960 aaKnown RBP8.15□□□□□ -1.1
VPS52-219ENST00000493379 RPAP1Q9BWH6 1393 aaPredicted RBP8.15□□□□□ -1.1
VPS52-219ENST00000493379 ERC2O15083 957 aa8.15□□□□□ -1.1
VPS52-219ENST00000493379 WDHD1O75717 1129 aaPredicted RBP8.15□□□□□ -1.1
VPS52-219ENST00000493379 MX1P20591 662 aa8.15□□□□□ -1.1
VPS52-219ENST00000493379 IRX6P78412 446 aaPredicted RBP8.15□□□□□ -1.1
VPS52-219ENST00000493379 SP3Q02447 781 aa8.15□□□□□ -1.1
VPS52-219ENST00000493379 NR1H3Q13133 447 aa8.15□□□□□ -1.1
VPS52-219ENST00000493379 FAM109BQ6ICB4 259 aaPredicted RBP8.15□□□□□ -1.1
VPS52-219ENST00000493379 METTL16Q86W50 562 aaKnown RBP8.15□□□□□ -1.1
VPS52-219ENST00000493379 C7orf61Q8IZ16 206 aa8.15□□□□□ -1.1
VPS52-219ENST00000493379 KCTD17Q8N5Z5 321 aa8.15□□□□□ -1.1
VPS52-219ENST00000493379 FAM151AQ8WW52 585 aa8.15□□□□□ -1.1
VPS52-219ENST00000493379 COL26A1Q96A83 441 aa8.15□□□□□ -1.1
VPS52-219ENST00000493379 NECAB3Q96P71 396 aaPredicted RBP8.15□□□□□ -1.1
VPS52-219ENST00000493379 BOLA2Q9H3K6 86 aa8.15□□□□□ -1.1
VPS52-219ENST00000493379 PAG1Q9NWQ8 432 aa8.15□□□□□ -1.1
VPS52-219ENST00000493379 MAP10Q9P2G4 905 aa8.15□□□□□ -1.1
VPS52-219ENST00000493379 FBXO45P0C2W1 286 aa8.14□□□□□ -1.11
VPS52-219ENST00000493379 RASA3Q14644 834 aa8.14□□□□□ -1.11
VPS52-219ENST00000493379 SUPT20HL1Q3ZLR7 823 aa8.14□□□□□ -1.11
VPS52-219ENST00000493379 MSS51Q4VC12 460 aa8.14□□□□□ -1.11
VPS52-219ENST00000493379 LDLRAD1Q5T700 205 aa8.14□□□□□ -1.11
VPS52-219ENST00000493379 ZNF697Q5TEC3 545 aa8.14□□□□□ -1.11
VPS52-219ENST00000493379 NAA16Q6N069 864 aaPredicted RBP8.14□□□□□ -1.11
VPS52-219ENST00000493379 ADGRA1Q86SQ6 560 aa8.14□□□□□ -1.11
VPS52-219ENST00000493379 DZIP1Q86YF9 867 aaKnown RBP8.14□□□□□ -1.11
VPS52-219ENST00000493379 KBTBD3Q8NAB2 608 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms