RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 IFNL3Q8IZI9 196 aa21.47■■□□□ 1.03
USP48-201ENST00000308271 NKIRAS1Q9NYS0 192 aa21.47■■□□□ 1.03
USP48-201ENST00000308271 DENND2AQ9ULE3 1009 aa21.47■■□□□ 1.03
USP48-201ENST00000308271 IL2RBP14784 551 aa21.46■■□□□ 1.03
USP48-201ENST00000308271 SYMPKQ92797 1274 aaKnown RBP21.46■■□□□ 1.03
USP48-201ENST00000308271 SAMSN1Q9NSI8 373 aaKnown RBP21.46■■□□□ 1.03
USP48-201ENST00000308271 UTP18Q9Y5J1 556 aaKnown RBP eCLIP21.46■■□□□ 1.03
USP48-201ENST00000308271 PDE6AP16499 860 aa21.46■■□□□ 1.03
USP48-201ENST00000308271 ATP11AP98196 1134 aa21.46■■□□□ 1.03
USP48-201ENST00000308271 CACNA2D3Q8IZS8 1091 aa21.46■■□□□ 1.03
USP48-201ENST00000308271 CSRNP2Q9H175 543 aa21.46■■□□□ 1.03
USP48-201ENST00000308271 IKBKGQ9Y6K9 419 aa21.46■■□□□ 1.03
USP48-201ENST00000308271 IQCB1Q15051 598 aa21.46■■□□□ 1.03
USP48-201ENST00000308271 KRT25Q7Z3Z0 450 aa21.46■■□□□ 1.03
USP48-201ENST00000308271 CABP7Q86V35 215 aa21.46■■□□□ 1.03
USP48-201ENST00000308271 DHX40Q8IX18 779 aaKnown RBP21.46■■□□□ 1.03
USP48-201ENST00000308271 SPHKAPQ2M3C7 1700 aa21.46■■□□□ 1.03
USP48-201ENST00000308271 ATP2A1O14983 1001 aa21.46■■□□□ 1.03
USP48-201ENST00000308271 NIP7Q9Y221 180 aaKnown RBP eCLIP21.46■■□□□ 1.03
USP48-201ENST00000308271 hCG_1642624A0A1W2PR95 340 aa21.45■■□□□ 1.02
USP48-201ENST00000308271 ENC1O14682 589 aa21.45■■□□□ 1.02
USP48-201ENST00000308271 SLFN14P0C7P3 912 aa21.45■■□□□ 1.02
USP48-201ENST00000308271 UBE3CQ15386 1083 aa21.45■■□□□ 1.02
USP48-201ENST00000308271 RPN1P04843 607 aaKnown RBP21.45■■□□□ 1.02
USP48-201ENST00000308271 HLA-DOAP06340 250 aa21.45■■□□□ 1.02
USP48-201ENST00000308271 GUCY2FP51841 1108 aa21.45■■□□□ 1.02
USP48-201ENST00000308271 NONOQ15233 471 aaKnown RBP eCLIP21.45■■□□□ 1.023e-6■■■■□ 21.1
USP48-201ENST00000308271 PPP1R7Q15435 360 aa21.45■■□□□ 1.02
USP48-201ENST00000308271 LRRC24Q50LG9 513 aa21.45■■□□□ 1.02
USP48-201ENST00000308271 CCDC174Q6PII3 467 aa21.45■■□□□ 1.02
USP48-201ENST00000308271 INTS8Q75QN2 995 aaKnown RBP21.45■■□□□ 1.02
USP48-201ENST00000308271 USP6P35125 1406 aa21.45■■□□□ 1.02
USP48-201ENST00000308271 SEL1L2Q5TEA6 688 aa21.45■■□□□ 1.02
USP48-201ENST00000308271 NAP1L4Q99733 375 aaKnown RBP21.45■■□□□ 1.02
USP48-201ENST00000308271 PARP1P09874 1014 aaKnown RBP21.45■■□□□ 1.02
USP48-201ENST00000308271 ALDH3A1P30838 453 aa21.45■■□□□ 1.02
USP48-201ENST00000308271 EPHB4P54760 987 aa21.45■■□□□ 1.02
USP48-201ENST00000308271 DCAF17Q5H9S7 520 aaPredicted RBP21.45■■□□□ 1.02
USP48-201ENST00000308271 FLOT1O75955 427 aa21.44■■□□□ 1.02
USP48-201ENST00000308271 CTNNA1P35221 906 aaKnown RBP21.44■■□□□ 1.02
USP48-201ENST00000308271 ACRBPQ8NEB7 543 aa21.44■■□□□ 1.02
USP48-201ENST00000308271 PLCB1Q9NQ66 1216 aa21.44■■□□□ 1.02
USP48-201ENST00000308271 CCNT1O60563 726 aaKnown RBP21.44■■□□□ 1.02
USP48-201ENST00000308271 CCZ1BP86790 482 aa21.44■■□□□ 1.02
USP48-201ENST00000308271 CCZ1P86791 482 aaPredicted RBP21.44■■□□□ 1.02
USP48-201ENST00000308271 USP37Q86T82 979 aa21.44■■□□□ 1.02
USP48-201ENST00000308271 SYCE1Q8N0S2 351 aa21.44■■□□□ 1.02
USP48-201ENST00000308271 LRWD1Q9UFC0 647 aa21.44■■□□□ 1.02
USP48-201ENST00000308271 YEATS2Q9ULM3 1422 aa21.44■■□□□ 1.02
USP48-201ENST00000308271 TMEM110-MUSTN1A8MSY1 372 aa21.44■■□□□ 1.02
USP48-201ENST00000308271 CIAO1O76071 339 aa21.44■■□□□ 1.02
USP48-201ENST00000308271 EEF1GP26641 437 aaKnown RBP21.44■■□□□ 1.02
USP48-201ENST00000308271 TSGA10IPQ3SY00 556 aa21.44■■□□□ 1.02
USP48-201ENST00000308271 RETREG2Q8NC44 543 aa21.44■■□□□ 1.02
USP48-201ENST00000308271 TMEM2Q9UHN6 1383 aa21.44■■□□□ 1.02
USP48-201ENST00000308271 FMNL1O95466 1100 aaPredicted RBP21.43■■□□□ 1.02
USP48-201ENST00000308271 CYP2C19P33261 490 aa21.43■■□□□ 1.02
USP48-201ENST00000308271 ZBTB16Q05516 673 aa21.43■■□□□ 1.02
USP48-201ENST00000308271 PPARAQ07869 468 aa21.43■■□□□ 1.02
USP48-201ENST00000308271 TAOK1Q7L7X3 1001 aa21.43■■□□□ 1.02
USP48-201ENST00000308271 BAIAP2L1Q9UHR4 511 aa21.43■■□□□ 1.02
USP48-201ENST00000308271 METP08581 1390 aa21.43■■□□□ 1.02
USP48-201ENST00000308271 TXKP42681 527 aa21.43■■□□□ 1.02
USP48-201ENST00000308271 MROH5Q6ZUA9 1318 aa21.43■■□□□ 1.02
USP48-201ENST00000308271 LRRIQ1Q96JM4 1722 aa21.43■■□□□ 1.02
USP48-201ENST00000308271 PTPN12Q05209 780 aaKnown RBP21.43■■□□□ 1.02
USP48-201ENST00000308271 CMTR1Q8N1G2 835 aaKnown RBP21.43■■□□□ 1.02
USP48-201ENST00000308271 TMOD2Q9NZR1 351 aa21.43■■□□□ 1.02
USP48-201ENST00000308271 EPB41P11171 864 aaKnown RBP21.43■■□□□ 1.02
USP48-201ENST00000308271 TCIRG1Q13488 830 aa21.43■■□□□ 1.02
USP48-201ENST00000308271 DAAM2Q86T65 1068 aa21.43■■□□□ 1.02
USP48-201ENST00000308271 SETBP1Q9Y6X0 1596 aa21.42■■□□□ 1.02
USP48-201ENST00000308271 TADA3O75528 432 aa21.42■■□□□ 1.02
USP48-201ENST00000308271 GYS2P54840 703 aa21.42■■□□□ 1.02
USP48-201ENST00000308271 PTGDRQ13258 359 aa21.42■■□□□ 1.02
USP48-201ENST00000308271 CLUL1Q15846 466 aa21.42■■□□□ 1.02
USP48-201ENST00000308271 GKAP1Q5VSY0 366 aaPredicted RBP21.42■■□□□ 1.02
USP48-201ENST00000308271 ARMCX5Q6P1M9 558 aa21.42■■□□□ 1.02
USP48-201ENST00000308271 PEX26Q7Z412 305 aa21.42■■□□□ 1.02
USP48-201ENST00000308271 TRIM31Q9BZY9 425 aa21.42■■□□□ 1.02
USP48-201ENST00000308271 ATP10DQ9P241 1426 aa21.42■■□□□ 1.02
USP48-201ENST00000308271 TRAF1Q13077 416 aa21.42■■□□□ 1.02
USP48-201ENST00000308271 NLRP3Q96P20 1036 aa21.42■■□□□ 1.02
USP48-201ENST00000308271 ZCCHC17Q9NP64 241 aaKnown RBP21.42■■□□□ 1.02
USP48-201ENST00000308271 NLRC4Q9NPP4 1024 aa21.42■■□□□ 1.02
USP48-201ENST00000308271 ATP6V0A2Q9Y487 856 aa21.42■■□□□ 1.02
USP48-201ENST00000308271 NEO1Q92859 1461 aa21.42■■□□□ 1.02
USP48-201ENST00000308271 ABCA6Q8N139 1617 aa21.42■■□□□ 1.02
USP48-201ENST00000308271 FAM13AO94988 1023 aa21.41■■□□□ 1.02
USP48-201ENST00000308271 SLC8A1P32418 973 aa21.41■■□□□ 1.02
USP48-201ENST00000308271 ICE2Q659A1 982 aa21.41■■□□□ 1.02
USP48-201ENST00000308271 M0R2C6 588 aa21.41■■□□□ 1.02
USP48-201ENST00000308271 LONP1P36776 959 aaKnown RBP21.41■■□□□ 1.02
USP48-201ENST00000308271 FNBP4Q8N3X1 1017 aaPredicted RBP21.41■■□□□ 1.02
USP48-201ENST00000308271 MFAP3LO75121 409 aa21.41■■□□□ 1.02
USP48-201ENST00000308271 IFNAR1P17181 557 aa21.41■■□□□ 1.02
USP48-201ENST00000308271 E4F1Q66K89 784 aaPredicted RBP21.41■■□□□ 1.02
USP48-201ENST00000308271 RPGRQ92834 1020 aaKnown RBP21.41■■□□□ 1.02
USP48-201ENST00000308271 RAB17Q9H0T7 212 aa21.41■■□□□ 1.02
USP48-201ENST00000308271 STIM2Q9P246 746 aa21.41■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms