RNA–Protein interactions for RNA: YFR002W

NIC96, Transcript of Linker nucleoporin component of the nuclear pore complex (NPC), yeast

Gene NIC96, Length 2,520 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NIC96	YFR002W	CRD1	Q07560	283 aa		2.8	□□□□□ -1.96
NIC96	YFR002W	AAD4	Q07747	329 aa		2.8	□□□□□ -1.96
NIC96	YFR002W	STH1	P32597	1359 aa		2.8	□□□□□ -1.96
NIC96	YFR002W	SWE1	P32944	819 aa		2.8	□□□□□ -1.96
NIC96	YFR002W	ERC1	P38767	581 aa		2.8	□□□□□ -1.96
NIC96	YFR002W	ASK10	P48361	1146 aa		2.8	□□□□□ -1.96
NIC96	YFR002W	AIM6	Q07716	390 aa		2.8	□□□□□ -1.96
NIC96	YFR002W	HER1	Q12276	1246 aa		2.8	□□□□□ -1.96
NIC96	YFR002W	YPR089W	O13585	888 aa		2.79	□□□□□ -1.96
NIC96	YFR002W	CTT1	P06115	562 aa		2.79	□□□□□ -1.96
NIC96	YFR002W	TOM20	P35180	183 aa		2.79	□□□□□ -1.96
NIC96	YFR002W	SPC97	P38863	823 aa		2.79	□□□□□ -1.96
NIC96	YFR002W	YNL058C	P53947	316 aa		2.79	□□□□□ -1.96
NIC96	YFR002W	RPL15B	P54780	204 aa	Predicted RBP	2.79	□□□□□ -1.96
NIC96	YFR002W	VPS64	Q03944	604 aa		2.79	□□□□□ -1.96
NIC96	YFR002W	NUP157	P40064	1391 aa	Known RBP	2.79	□□□□□ -1.96
NIC96	YFR002W	YCP4	P25349	247 aa	Known RBP	2.79	□□□□□ -1.96
NIC96	YFR002W	GSH1	P32477	678 aa		2.79	□□□□□ -1.96
NIC96	YFR002W	YMR124W	P39523	943 aa	Known RBP	2.79	□□□□□ -1.96
NIC96	YFR002W	SCS3	P53012	380 aa		2.79	□□□□□ -1.96
NIC96	YFR002W	ESF2	P53743	316 aa	Known RBP	2.79	□□□□□ -1.96
NIC96	YFR002W	YAT1	P80235	687 aa		2.79	□□□□□ -1.96
NIC96	YFR002W	GET3	Q12154	354 aa	Known RBP	2.79	□□□□□ -1.96
NIC96	YFR002W	FRD1	P32614	470 aa	Known RBP	2.78	□□□□□ -1.96
NIC96	YFR002W	VBA2	P38358	474 aa	Known RBP	2.78	□□□□□ -1.96
NIC96	YFR002W	YOR389W	Q08912	624 aa		2.78	□□□□□ -1.96
NIC96	YFR002W	YPL191C	Q08930	360 aa		2.78	□□□□□ -1.96
NIC96	YFR002W	PFA4	Q12006	378 aa		2.78	□□□□□ -1.96
NIC96	YFR002W	ARP7	Q12406	477 aa		2.78	□□□□□ -1.96
NIC96	YFR002W	YUR1	P26725	428 aa		2.78	□□□□□ -1.96
NIC96	YFR002W	FLO5	P38894	1075 aa		2.78	□□□□□ -1.96
NIC96	YFR002W	ICL2	Q12031	575 aa		2.78	□□□□□ -1.96
NIC96	YFR002W	ILS1	P09436	1072 aa	Known RBP	2.77	□□□□□ -1.97
NIC96	YFR002W	MAD3	P47074	515 aa		2.77	□□□□□ -1.97
NIC96	YFR002W	YBR255C-A	Q3E776	120 aa		2.77	□□□□□ -1.97
NIC96	YFR002W	MPD2	Q99316	277 aa		2.77	□□□□□ -1.97
NIC96	YFR002W	AIM17	P23180	465 aa	Known RBP	2.77	□□□□□ -1.97
NIC96	YFR002W	MGM1	P32266	881 aa		2.77	□□□□□ -1.97
NIC96	YFR002W	PXL1	P36166	706 aa		2.77	□□□□□ -1.97
NIC96	YFR002W	STT3	P39007	718 aa	Known RBP	2.77	□□□□□ -1.97
NIC96	YFR002W	NPA3	P47122	385 aa		2.77	□□□□□ -1.97
NIC96	YFR002W	AAT1	Q01802	451 aa		2.77	□□□□□ -1.97
NIC96	YFR002W	SND1	Q04007	877 aa		2.77	□□□□□ -1.97
NIC96	YFR002W	RPT3	P33298	428 aa	Known RBP	2.76	□□□□□ -1.97
NIC96	YFR002W	PEX8	P53248	589 aa		2.76	□□□□□ -1.97
NIC96	YFR002W	NIC96	P34077	839 aa		2.76	□□□□□ -1.97
NIC96	YFR002W	RPF2	P36160	344 aa	Known RBP	2.76	□□□□□ -1.97
NIC96	YFR002W	MRPL1	Q04599	285 aa		2.76	□□□□□ -1.97
NIC96	YFR002W	YOL114C	Q12322	202 aa		2.76	□□□□□ -1.97
NIC96	YFR002W	PDE1	P22434	369 aa		2.75	□□□□□ -1.97
NIC96	YFR002W	PTC6	P25646	442 aa		2.75	□□□□□ -1.97
NIC96	YFR002W	LYS20	P48570	428 aa	Known RBP	2.75	□□□□□ -1.97
NIC96	YFR002W	SIR1	P21691	654 aa		2.75	□□□□□ -1.97
NIC96	YFR002W	SIP1	P32578	815 aa		2.75	□□□□□ -1.97
NIC96	YFR002W	GND1	P38720	489 aa	Known RBP	2.75	□□□□□ -1.97
NIC96	YFR002W	CDC1	P40986	491 aa		2.75	□□□□□ -1.97
NIC96	YFR002W	YJL107C	P42947	387 aa		2.75	□□□□□ -1.97
NIC96	YFR002W	LEA1	Q08963	238 aa	Predicted RBP	2.75	□□□□□ -1.97
NIC96	YFR002W	CAT8	P39113	1433 aa		2.74	□□□□□ -1.97
NIC96	YFR002W	ILV2	P07342	687 aa	Known RBP	2.74	□□□□□ -1.97
NIC96	YFR002W	SEC18	P18759	758 aa	Known RBP	2.74	□□□□□ -1.97
NIC96	YFR002W	TOM71	P38825	639 aa	Known RBP	2.74	□□□□□ -1.97
NIC96	YFR002W	MEP2	P41948	499 aa		2.74	□□□□□ -1.97
NIC96	YFR002W	YPR003C	P53394	754 aa		2.74	□□□□□ -1.97
NIC96	YFR002W	MOT3	P54785	490 aa	Known RBP	2.74	□□□□□ -1.97
NIC96	YFR002W	VTC3	Q02725	835 aa		2.74	□□□□□ -1.97
NIC96	YFR002W	EIS1	Q05050	843 aa	Known RBP	2.74	□□□□□ -1.97
NIC96	YFR002W	SEC7	P11075	2009 aa	Known RBP	2.74	□□□□□ -1.97
NIC96	YFR002W	COX1	P00401	534 aa		2.74	□□□□□ -1.97
NIC96	YFR002W	CNA1	P23287	553 aa		2.74	□□□□□ -1.97
NIC96	YFR002W	ATO2	P32907	282 aa		2.74	□□□□□ -1.97
NIC96	YFR002W	STB2	P46679	850 aa		2.74	□□□□□ -1.97
NIC96	YFR002W	ORC5	P50874	479 aa		2.74	□□□□□ -1.97
NIC96	YFR002W	TAM41	P53230	385 aa		2.74	□□□□□ -1.97
NIC96	YFR002W	YGR079W	P53249	370 aa		2.74	□□□□□ -1.97
NIC96	YFR002W	BRE1	Q07457	700 aa	Known RBP	2.74	□□□□□ -1.97
NIC96	YFR002W	YOL057W	Q08225	711 aa		2.74	□□□□□ -1.97
NIC96	YFR002W	ATX2	Q12067	313 aa		2.74	□□□□□ -1.97
NIC96	YFR002W	MCM3	P24279	971 aa	Known RBP	2.73	□□□□□ -1.97
NIC96	YFR002W	HES1	P35843	434 aa		2.73	□□□□□ -1.97
NIC96	YFR002W	ARN1	P38731	627 aa		2.73	□□□□□ -1.97
NIC96	YFR002W	RRI1	Q12468	440 aa		2.73	□□□□□ -1.97
NIC96	YFR002W	SST2	P11972	698 aa	Known RBP	2.73	□□□□□ -1.97
NIC96	YFR002W	LAC1	P28496	418 aa		2.73	□□□□□ -1.97
NIC96	YFR002W	YIL152W	P40455	235 aa		2.73	□□□□□ -1.97
NIC96	YFR002W	MDV1	P47025	714 aa		2.73	□□□□□ -1.97
NIC96	YFR002W	TEP1	P53916	434 aa		2.73	□□□□□ -1.97
NIC96	YFR002W	THI3	Q07471	609 aa		2.73	□□□□□ -1.97
NIC96	YFR002W	PUF2	Q12221	1075 aa	Known RBP RIP-Chip data	2.73	□□□□□ -1.97	not detected
NIC96	YFR002W	RIT1	P23796	513 aa		2.72	□□□□□ -1.97
NIC96	YFR002W	SWI4	P25302	1093 aa	Known RBP	2.72	□□□□□ -1.97
NIC96	YFR002W	URK1	P27515	501 aa		2.72	□□□□□ -1.97
NIC96	YFR002W	BUD16	P39988	312 aa		2.72	□□□□□ -1.97
NIC96	YFR002W	TPM2	P40414	161 aa		2.72	□□□□□ -1.97
NIC96	YFR002W	CAB2	P40506	365 aa		2.72	□□□□□ -1.97
NIC96	YFR002W	QRI7	P43122	407 aa		2.72	□□□□□ -1.97
NIC96	YFR002W	YRB30	P53107	440 aa	Predicted RBP	2.72	□□□□□ -1.97
NIC96	YFR002W	LSC1	P53598	329 aa	Known RBP	2.72	□□□□□ -1.97
NIC96	YFR002W	SUL2	Q12325	893 aa		2.72	□□□□□ -1.97
NIC96	YFR002W	TMA7	Q3E764	64 aa	Known RBP	2.72	□□□□□ -1.97

Retrieved 100 of 5,963 RNA–protein pairs in 12.7 ms