RNA–Protein interactions for RNA: YER012W

PRE1, Transcript of Beta 4 subunit of the 20S proteasome, yeastyeast

Gene PRE1, Length 597 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRE1YER012W SRL1Q08673 210 aa3.86□□□□□ -1.79
PRE1YER012W TMA17Q12513 150 aa3.86□□□□□ -1.79
PRE1YER012W YIL177CP40434 1758 aa3.86□□□□□ -1.79
PRE1YER012W YJL225CP40889 1758 aa3.86□□□□□ -1.79
PRE1YER012W SES1P07284 462 aaKnown RBP3.85□□□□□ -1.79
PRE1YER012W ARB1P40024 610 aaKnown RBP3.85□□□□□ -1.79
PRE1YER012W HOL1P53389 586 aa3.85□□□□□ -1.79
PRE1YER012W YMR034CQ05131 434 aaPredicted RBP3.85□□□□□ -1.79
PRE1YER012W GET3Q12154 354 aaKnown RBP3.85□□□□□ -1.79
PRE1YER012W RAV1P47104 1357 aa3.85□□□□□ -1.79
PRE1YER012W YRF1-2P40105 1681 aa3.84□□□□□ -1.79
PRE1YER012W YCR043CP25361 127 aa3.84□□□□□ -1.79
PRE1YER012W YCR061WP25639 631 aa3.84□□□□□ -1.79
PRE1YER012W GSH1P32477 678 aa3.84□□□□□ -1.79
PRE1YER012W TFC4P33339 1025 aa3.84□□□□□ -1.79
PRE1YER012W YBR071WP38243 211 aa3.84□□□□□ -1.79
PRE1YER012W ENP1P38333 483 aaKnown RBP3.84□□□□□ -1.79
PRE1YER012W VFA1P40080 203 aa3.84□□□□□ -1.79
PRE1YER012W GIS2P53849 153 aaKnown RBP RIP-Chip data3.84□□□□□ -1.79not detected
PRE1YER012W TRS31Q03337 283 aa3.84□□□□□ -1.79
PRE1YER012W ECM22Q05958 814 aaPredicted RBP3.84□□□□□ -1.79
PRE1YER012W NDD1Q08887 554 aa3.84□□□□□ -1.79
PRE1YER012W ENT1Q12518 454 aa3.84□□□□□ -1.79
PRE1YER012W URB1P34241 1764 aaKnown RBP3.84□□□□□ -1.8
PRE1YER012W FKS3Q04952 1785 aa3.84□□□□□ -1.8
PRE1YER012W SCS2P40075 244 aaKnown RBP3.83□□□□□ -1.8
PRE1YER012W YIL152WP40455 235 aa3.83□□□□□ -1.8
PRE1YER012W PEX15Q08215 383 aa3.83□□□□□ -1.8
PRE1YER012W ATX2Q12067 313 aa3.83□□□□□ -1.8
PRE1YER012W RRI1Q12468 440 aa3.83□□□□□ -1.8
PRE1YER012W YRF1-3P0CX14 1859 aa3.83□□□□□ -1.8
PRE1YER012W YRF1-7P0CX15 1859 aa3.83□□□□□ -1.8
PRE1YER012W YRF1-6P53819 1859 aa3.83□□□□□ -1.8
PRE1YER012W RPL42AP0CX27 106 aaKnown RBP3.82□□□□□ -1.8
PRE1YER012W RPL42BP0CX28 106 aaKnown RBP3.82□□□□□ -1.8
PRE1YER012W KAR1P11927 433 aa3.82□□□□□ -1.8
PRE1YER012W RRP8P38961 392 aaKnown RBP3.82□□□□□ -1.8
PRE1YER012W YAT2P40017 923 aa3.82□□□□□ -1.8
PRE1YER012W RAD26P40352 1085 aa3.82□□□□□ -1.8
PRE1YER012W YPT11P48559 417 aa3.82□□□□□ -1.8
PRE1YER012W YNL058CP53947 316 aa3.82□□□□□ -1.8
PRE1YER012W BOP3P53958 396 aa3.82□□□□□ -1.8
PRE1YER012W NUR1Q12066 484 aa3.82□□□□□ -1.8
PRE1YER012W ILV2P07342 687 aaKnown RBP3.81□□□□□ -1.8
PRE1YER012W CNA1P23287 553 aa3.81□□□□□ -1.8
PRE1YER012W ARC40P38328 384 aaKnown RBP3.81□□□□□ -1.8
PRE1YER012W POL31P46957 487 aa3.81□□□□□ -1.8
PRE1YER012W COG6P53959 839 aa3.81□□□□□ -1.8
PRE1YER012W YNL034WP53963 612 aa3.81□□□□□ -1.8
PRE1YER012W YAT1P80235 687 aa3.81□□□□□ -1.8
PRE1YER012W DSE3Q08729 430 aa3.81□□□□□ -1.8
PRE1YER012W UBX3Q12229 455 aa3.81□□□□□ -1.8
PRE1YER012W CTT1P06115 562 aa3.8□□□□□ -1.8
PRE1YER012W PHO3P24031 467 aa3.8□□□□□ -1.8
PRE1YER012W VBA2P38358 474 aaKnown RBP3.8□□□□□ -1.8
PRE1YER012W NOP2P40991 618 aaKnown RBP3.8□□□□□ -1.8
PRE1YER012W TES1P41903 349 aaKnown RBP3.8□□□□□ -1.8
PRE1YER012W PSF3Q12146 194 aa3.8□□□□□ -1.8
PRE1YER012W ERC1P38767 581 aa3.79□□□□□ -1.8
PRE1YER012W IMA5P40884 581 aa3.79□□□□□ -1.8
PRE1YER012W YJL107CP42947 387 aa3.79□□□□□ -1.8
PRE1YER012W ORC5P50874 479 aa3.79□□□□□ -1.8
PRE1YER012W YPR003CP53394 754 aa3.79□□□□□ -1.8
PRE1YER012W YNL144CP53907 740 aa3.79□□□□□ -1.8
PRE1YER012W DIG1Q03063 452 aaKnown RBP3.79□□□□□ -1.8
PRE1YER012W PHM6Q05637 104 aa3.79□□□□□ -1.8
PRE1YER012W NRT1Q08485 598 aa3.79□□□□□ -1.8
PRE1YER012W ADH4P10127 382 aa3.78□□□□□ -1.8
PRE1YER012W SIP1P32578 815 aa3.78□□□□□ -1.8
PRE1YER012W TGL1P34163 548 aa3.78□□□□□ -1.8
PRE1YER012W MET30P39014 640 aa3.78□□□□□ -1.8
PRE1YER012W CCT4P39078 528 aaKnown RBP3.78□□□□□ -1.8
PRE1YER012W SSP120P39931 234 aaKnown RBP3.78□□□□□ -1.8
PRE1YER012W EMP65P40085 556 aa3.78□□□□□ -1.8
PRE1YER012W NPA3P47122 385 aa3.78□□□□□ -1.8
PRE1YER012W MLH2Q07980 695 aa3.78□□□□□ -1.8
PRE1YER012W VAS1P07806 1104 aaKnown RBP3.77□□□□□ -1.81
PRE1YER012W PTC6P25646 442 aa3.77□□□□□ -1.81
PRE1YER012W PRP45P28004 379 aaPredicted RBP3.77□□□□□ -1.81
PRE1YER012W YIL169CP40442 995 aa3.77□□□□□ -1.81
PRE1YER012W IMH1Q06704 911 aaKnown RBP3.77□□□□□ -1.81
PRE1YER012W SLX4Q12098 748 aa3.77□□□□□ -1.81
PRE1YER012W KGD2P19262 463 aaPredicted RBP3.76□□□□□ -1.81
PRE1YER012W GRX4P32642 244 aa3.76□□□□□ -1.81
PRE1YER012W RPF2P36160 344 aaKnown RBP3.76□□□□□ -1.81
PRE1YER012W TOM71P38825 639 aaKnown RBP3.76□□□□□ -1.81
PRE1YER012W YGL036WP53185 909 aaPredicted RBP3.76□□□□□ -1.81
PRE1YER012W ESF2P53743 316 aaKnown RBP3.76□□□□□ -1.81
PRE1YER012W GSH2Q08220 491 aa3.76□□□□□ -1.81
PRE1YER012W ICL2Q12031 575 aa3.76□□□□□ -1.81
PRE1YER012W COX1P00401 534 aa3.75□□□□□ -1.81
PRE1YER012W TAF5P38129 798 aa3.75□□□□□ -1.81
PRE1YER012W ARN1P38731 627 aa3.75□□□□□ -1.81
PRE1YER012W PEX14P53112 341 aa3.75□□□□□ -1.81
PRE1YER012W VTC3Q02725 835 aa3.75□□□□□ -1.81
PRE1YER012W TRI1Q05024 226 aa3.75□□□□□ -1.81
PRE1YER012W THI3Q07471 609 aa3.75□□□□□ -1.81
PRE1YER012W YPL191CQ08930 360 aa3.75□□□□□ -1.81
PRE1YER012W LEA1Q08963 238 aaPredicted RBP3.75□□□□□ -1.81
PRE1YER012W MSS51P32335 436 aa3.74□□□□□ -1.81
Retrieved 100 of 5,963 RNA–protein pairs in 534.3 ms