RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 YBX1P67809 324 aaKnown RBP1.6□□□□□ -2.15
VPS35-212ENST00000640313 CHRNEQ04844 493 aa1.6□□□□□ -2.15
VPS35-212ENST00000640313 AAMPQ13685 434 aa1.6□□□□□ -2.15
VPS35-212ENST00000640313 SLBPQ14493 270 aaKnown RBP eCLIP1.6□□□□□ -2.15
VPS35-212ENST00000640313 MAP1SQ66K74 1059 aaPredicted RBP1.6□□□□□ -2.15
VPS35-212ENST00000640313 CPZQ66K79 652 aa1.6□□□□□ -2.15
VPS35-212ENST00000640313 SCARA3Q6AZY7 606 aa1.6□□□□□ -2.15
VPS35-212ENST00000640313 C12orf40Q86WS4 652 aa1.6□□□□□ -2.15
VPS35-212ENST00000640313 FAM129CQ86XR2 697 aa1.6□□□□□ -2.15
VPS35-212ENST00000640313 SULF2Q8IWU5 870 aa1.6□□□□□ -2.15
VPS35-212ENST00000640313 RIN3Q8TB24 985 aa1.6□□□□□ -2.15
VPS35-212ENST00000640313 STK35Q8TDR2 534 aa1.6□□□□□ -2.15
VPS35-212ENST00000640313 GTF3C2Q8WUA4 911 aaPredicted RBP1.6□□□□□ -2.15
VPS35-212ENST00000640313 PPP1R13LQ8WUF5 828 aa1.6□□□□□ -2.15
VPS35-212ENST00000640313 BCANQ96GW7 911 aa1.6□□□□□ -2.15
VPS35-212ENST00000640313 SCAND2PQ9GZW5 306 aaPredicted RBP1.6□□□□□ -2.15
VPS35-212ENST00000640313 DUSP15Q9H1R2 295 aaPredicted RBP1.6□□□□□ -2.15
VPS35-212ENST00000640313 SIRT5Q9NXA8 310 aa1.6□□□□□ -2.15
VPS35-212ENST00000640313 TRAK1Q9UPV9 953 aa1.6□□□□□ -2.15
VPS35-212ENST00000640313 WASH4PA8MWX3 477 aa1.59□□□□□ -2.15
VPS35-212ENST00000640313 DCDC2CA8MYV0 355 aa1.59□□□□□ -2.15
VPS35-212ENST00000640313 TRIM37O94972 964 aa1.59□□□□□ -2.15
VPS35-212ENST00000640313 ITGB3P05106 788 aa1.59□□□□□ -2.15
VPS35-212ENST00000640313 ATP2B4P23634 1241 aa1.59□□□□□ -2.15
VPS35-212ENST00000640313 TPP2P29144 1249 aaPredicted RBP1.59□□□□□ -2.15
VPS35-212ENST00000640313 KCNC1P48547 511 aa1.59□□□□□ -2.15
VPS35-212ENST00000640313 SLURP1P55000 103 aa1.59□□□□□ -2.15
VPS35-212ENST00000640313 PLCB3Q01970 1234 aa1.59□□□□□ -2.15
VPS35-212ENST00000640313 CRB2Q5IJ48 1285 aa1.59□□□□□ -2.15
VPS35-212ENST00000640313 UBXN11Q5T124 520 aa1.59□□□□□ -2.15
VPS35-212ENST00000640313 USPL1Q5W0Q7 1092 aa1.59□□□□□ -2.15
VPS35-212ENST00000640313 LETMD1Q6P1Q0 360 aa1.59□□□□□ -2.15
VPS35-212ENST00000640313 NLRX1Q86UT6 975 aa1.59□□□□□ -2.15
VPS35-212ENST00000640313 TTC9BQ8N6N2 239 aa1.59□□□□□ -2.15
VPS35-212ENST00000640313 ANKS4BQ8N8V4 417 aa1.59□□□□□ -2.15
VPS35-212ENST00000640313 MZB1Q8WU39 189 aa1.59□□□□□ -2.15
VPS35-212ENST00000640313 LINC01599Q8WXQ3 324 aa1.59□□□□□ -2.15
VPS35-212ENST00000640313 CLUAP1Q96AJ1 413 aa1.59□□□□□ -2.15
VPS35-212ENST00000640313 VWCEQ96DN2 955 aa1.59□□□□□ -2.15
VPS35-212ENST00000640313 PWWP2AQ96N64 755 aa1.59□□□□□ -2.15
VPS35-212ENST00000640313 RBM15Q96T37 977 aaKnown RBP eCLIP1.59□□□□□ -2.15
VPS35-212ENST00000640313 MIPEPQ99797 713 aa1.59□□□□□ -2.15
VPS35-212ENST00000640313 KRTAP3-1Q9BYR8 98 aa1.59□□□□□ -2.15
VPS35-212ENST00000640313 GPR62Q9BZJ7 368 aa1.59□□□□□ -2.15
VPS35-212ENST00000640313 TRIT1Q9H3H1 467 aaKnown RBP1.59□□□□□ -2.15
VPS35-212ENST00000640313 CRTAC1Q9NQ79 661 aa1.59□□□□□ -2.15
VPS35-212ENST00000640313 PICK1Q9NRD5 415 aa1.59□□□□□ -2.15
VPS35-212ENST00000640313 SMPD4Q9NXE4 827 aa1.59□□□□□ -2.15
VPS35-212ENST00000640313 ZNF281Q9Y2X9 895 aa1.59□□□□□ -2.15
VPS35-212ENST00000640313 CSADQ9Y600 493 aa1.59□□□□□ -2.15
VPS35-212ENST00000640313 NOTOA8MTQ0 251 aa1.58□□□□□ -2.16
VPS35-212ENST00000640313 ABLIM1O14639 778 aa1.58□□□□□ -2.16
VPS35-212ENST00000640313 FFAR3O14843 346 aa1.58□□□□□ -2.16
VPS35-212ENST00000640313 CPNE3O75131 537 aaKnown RBP1.58□□□□□ -2.16
VPS35-212ENST00000640313 XRCC5P13010 732 aaKnown RBP1.58□□□□□ -2.16
VPS35-212ENST00000640313 C6P13671 934 aa1.58□□□□□ -2.16
VPS35-212ENST00000640313 ZNF20P17024 532 aa1.58□□□□□ -2.16
VPS35-212ENST00000640313 TACR2P21452 398 aa1.58□□□□□ -2.16
VPS35-212ENST00000640313 BMP6P22004 513 aa1.58□□□□□ -2.16
VPS35-212ENST00000640313 VIPR1P32241 457 aa1.58□□□□□ -2.16
VPS35-212ENST00000640313 CDR1P51861 262 aa1.58□□□□□ -2.16
VPS35-212ENST00000640313 EGR3Q06889 387 aa1.58□□□□□ -2.16
VPS35-212ENST00000640313 DUSP4Q13115 394 aa1.58□□□□□ -2.16
VPS35-212ENST00000640313 OLFML2BQ68BL8 750 aa1.58□□□□□ -2.16
VPS35-212ENST00000640313 MPRIPQ6WCQ1 1025 aa1.58□□□□□ -2.16
VPS35-212ENST00000640313 DTHD1Q6ZMT9 781 aa1.58□□□□□ -2.16
VPS35-212ENST00000640313 TSPYL5Q86VY4 417 aaPredicted RBP1.58□□□□□ -2.16
VPS35-212ENST00000640313 IGDCC3Q8IVU1 814 aa1.58□□□□□ -2.16
VPS35-212ENST00000640313 Q8N1X5 172 aa1.58□□□□□ -2.16
VPS35-212ENST00000640313 SYTL4Q96C24 671 aaPredicted RBP1.58□□□□□ -2.16
VPS35-212ENST00000640313 ACSBG1Q96GR2 724 aa1.58□□□□□ -2.16
VPS35-212ENST00000640313 Q96M66 194 aa1.58□□□□□ -2.16
VPS35-212ENST00000640313 SAMD11Q96NU1 681 aa1.58□□□□□ -2.16
VPS35-212ENST00000640313 NPHS2Q9NP85 383 aa1.58□□□□□ -2.16
VPS35-212ENST00000640313 CCDC87Q9NVE4 849 aa1.58□□□□□ -2.16
VPS35-212ENST00000640313 EBF1Q9UH73 591 aa1.58□□□□□ -2.16
VPS35-212ENST00000640313 GPN3Q9UHW5 284 aaPredicted RBP1.58□□□□□ -2.16
VPS35-212ENST00000640313 DUSP13Q9UII6 198 aa1.58□□□□□ -2.16
VPS35-212ENST00000640313 GPR160Q9UJ42 338 aa1.58□□□□□ -2.16
VPS35-212ENST00000640313 CST3P01034 146 aaPredicted RBP1.57□□□□□ -2.16
VPS35-212ENST00000640313 TGM1P22735 817 aa1.57□□□□□ -2.16
VPS35-212ENST00000640313 FKBP4Q02790 459 aaKnown RBP eCLIP1.57□□□□□ -2.16
VPS35-212ENST00000640313 HNRNPA0Q13151 305 aaKnown RBP1.57□□□□□ -2.16
VPS35-212ENST00000640313 SF3B2Q13435 895 aaKnown RBP1.57□□□□□ -2.16
VPS35-212ENST00000640313 MTMR3Q13615 1198 aa1.57□□□□□ -2.16
VPS35-212ENST00000640313 GRM2Q14416 872 aa1.57□□□□□ -2.16
VPS35-212ENST00000640313 NKG7Q16617 165 aa1.57□□□□□ -2.16
VPS35-212ENST00000640313 ADGRF1Q5T601 910 aa1.57□□□□□ -2.16
VPS35-212ENST00000640313 CRIP3Q6Q6R5 217 aa1.57□□□□□ -2.16
VPS35-212ENST00000640313 FERMT3Q86UX7 667 aa1.57□□□□□ -2.16
VPS35-212ENST00000640313 LDHDQ86WU2 507 aa1.57□□□□□ -2.16
VPS35-212ENST00000640313 HID1Q8IV36 788 aa1.57□□□□□ -2.16
VPS35-212ENST00000640313 ZFPM1Q8IX07 1006 aa1.57□□□□□ -2.16
VPS35-212ENST00000640313 NLGN1Q8N2Q7 840 aa1.57□□□□□ -2.16
VPS35-212ENST00000640313 CCDC74AQ96AQ1 378 aa1.57□□□□□ -2.16
VPS35-212ENST00000640313 WNT10AQ9GZT5 417 aa1.57□□□□□ -2.16
VPS35-212ENST00000640313 PCED1AQ9H1Q7 454 aa1.57□□□□□ -2.16
VPS35-212ENST00000640313 FBRSQ9HAH7 460 aa1.57□□□□□ -2.16
VPS35-212ENST00000640313 GPATCH2Q9NW75 528 aa1.57□□□□□ -2.16
VPS35-212ENST00000640313 PPP4R2Q9NY27 417 aa1.57□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 120.7 ms