RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 GCLCP48506 637 aaPredicted RBP19.4■□□□□ 0.7
TRIM28-206ENST00000595974 TDO2P48775 406 aa19.4■□□□□ 0.7
TRIM28-206ENST00000595974 CDK8P49336 464 aa19.4■□□□□ 0.7
TRIM28-206ENST00000595974 USP14P54578 494 aa19.4■□□□□ 0.7
TRIM28-206ENST00000595974 IRX3P78415 501 aaPredicted RBP19.4■□□□□ 0.7
TRIM28-206ENST00000595974 SEPT2Q15019 361 aa19.4■□□□□ 0.7
TRIM28-206ENST00000595974 PLEKHM2Q8IWE5 1019 aa19.4■□□□□ 0.7
TRIM28-206ENST00000595974 SEC62Q99442 399 aaKnown RBP19.4■□□□□ 0.7
TRIM28-206ENST00000595974 KIAA1683Q9H0B3 1180 aa19.4■□□□□ 0.7
TRIM28-206ENST00000595974 ASCC2Q9H1I8 757 aaPredicted RBP19.4■□□□□ 0.7
TRIM28-206ENST00000595974 PSMC4P43686 418 aa19.39■□□□□ 0.69
TRIM28-206ENST00000595974 PRMT2P55345 433 aa19.39■□□□□ 0.69
TRIM28-206ENST00000595974 FAM110CQ1W6H9 321 aa19.39■□□□□ 0.69
TRIM28-206ENST00000595974 NACAP1Q9BZK3 213 aa19.39■□□□□ 0.69
TRIM28-206ENST00000595974 EMILIN3Q9NT22 766 aa19.39■□□□□ 0.69
TRIM28-206ENST00000595974 RBBP6Q7Z6E9 1792 aaKnown RBP19.39■□□□□ 0.69
TRIM28-206ENST00000595974 PATL2C9JE40 543 aaKnown RBP19.38■□□□□ 0.69
TRIM28-206ENST00000595974 SMIM22K7EJ46 135 aa19.38■□□□□ 0.69
TRIM28-206ENST00000595974 APPP05067 770 aa19.38■□□□□ 0.69
TRIM28-206ENST00000595974 ZYXQ15942 572 aaKnown RBP19.38■□□□□ 0.69
TRIM28-206ENST00000595974 ACER1Q8TDN7 264 aa19.38■□□□□ 0.69
TRIM28-206ENST00000595974 TRIM47Q96LD4 638 aa19.38■□□□□ 0.69
TRIM28-206ENST00000595974 KIAA0100Q14667 2235 aaKnown RBP19.37■□□□□ 0.69
TRIM28-206ENST00000595974 TRIM6-TRIM34B2RNG4 842 aa19.37■□□□□ 0.69
TRIM28-206ENST00000595974 AKR1B1P15121 316 aa19.37■□□□□ 0.69
TRIM28-206ENST00000595974 HOXD10P28358 340 aa19.37■□□□□ 0.69
TRIM28-206ENST00000595974 CTGFP29279 349 aa19.37■□□□□ 0.69
TRIM28-206ENST00000595974 FCGRTP55899 365 aa19.37■□□□□ 0.69
TRIM28-206ENST00000595974 IFNL3Q8IZI9 196 aa19.37■□□□□ 0.69
TRIM28-206ENST00000595974 ANKRD13CQ8N6S4 541 aa19.37■□□□□ 0.69
TRIM28-206ENST00000595974 HELLSQ9NRZ9 838 aa19.37■□□□□ 0.69
TRIM28-206ENST00000595974 PTCH2Q9Y6C5 1203 aa19.37■□□□□ 0.69
TRIM28-206ENST00000595974 MYH4Q9Y623 1939 aa19.37■□□□□ 0.69
TRIM28-206ENST00000595974 MINDY4BA8MYZ0 360 aa19.36■□□□□ 0.69
TRIM28-206ENST00000595974 FMNL1O95466 1100 aaPredicted RBP19.36■□□□□ 0.69
TRIM28-206ENST00000595974 ICA1Q05084 483 aa19.36■□□□□ 0.69
TRIM28-206ENST00000595974 GTF3C2Q8WUA4 911 aaPredicted RBP19.36■□□□□ 0.69
TRIM28-206ENST00000595974 NAPBQ9H115 298 aa19.36■□□□□ 0.69
TRIM28-206ENST00000595974 ARHGEF10LQ9HCE6 1279 aa19.36■□□□□ 0.69
TRIM28-206ENST00000595974 SRRDQ9UH36 339 aa19.36■□□□□ 0.69
TRIM28-206ENST00000595974 PARP14Q460N5 1801 aa19.35■□□□□ 0.69
TRIM28-206ENST00000595974 VCAM1P19320 739 aa19.35■□□□□ 0.69
TRIM28-206ENST00000595974 HERVK_113P62684 666 aa19.35■□□□□ 0.69
TRIM28-206ENST00000595974 CCDC129Q6ZRS4 1044 aa19.35■□□□□ 0.69
TRIM28-206ENST00000595974 RILPL2Q969X0 211 aa19.35■□□□□ 0.69
TRIM28-206ENST00000595974 ARMC5Q96C12 935 aa19.35■□□□□ 0.69
TRIM28-206ENST00000595974 SH2D4AQ9H788 454 aa19.35■□□□□ 0.69
TRIM28-206ENST00000595974 ZNF287Q9HBT7 754 aa19.35■□□□□ 0.69
TRIM28-206ENST00000595974 MORF4L1Q9UBU8 362 aa19.35■□□□□ 0.69
TRIM28-206ENST00000595974 MYPNQ86TC9 1320 aa19.34■□□□□ 0.69
TRIM28-206ENST00000595974 USP17L15C9J2P7 530 aa19.34■□□□□ 0.69
TRIM28-206ENST00000595974 USP17L13C9JLJ4 530 aa19.34■□□□□ 0.69
TRIM28-206ENST00000595974 USP17L11C9JVI0 530 aa19.34■□□□□ 0.69
TRIM28-206ENST00000595974 USP17L18D6R9N7 530 aa19.34■□□□□ 0.69
TRIM28-206ENST00000595974 USP17L22D6RA61 530 aa19.34■□□□□ 0.69
TRIM28-206ENST00000595974 USP17L17D6RBQ6 530 aa19.34■□□□□ 0.69
TRIM28-206ENST00000595974 USP17L19D6RCP7 530 aa19.34■□□□□ 0.69
TRIM28-206ENST00000595974 USP17L20D6RJB6 530 aa19.34■□□□□ 0.69
TRIM28-206ENST00000595974 ECM2O94769 699 aaPredicted RBP19.34■□□□□ 0.69
TRIM28-206ENST00000595974 USP17L24Q0WX57 530 aa19.34■□□□□ 0.69
TRIM28-206ENST00000595974 SLC9C1Q4G0N8 1177 aa19.34■□□□□ 0.69
TRIM28-206ENST00000595974 MKNK2Q9HBH9 465 aa19.34■□□□□ 0.69
TRIM28-206ENST00000595974 RLFQ13129 1914 aa19.33■□□□□ 0.69
TRIM28-206ENST00000595974 A0A0D9SFI3 127 aa19.33■□□□□ 0.68
TRIM28-206ENST00000595974 A0A1W2PRG0 241 aa19.33■□□□□ 0.68
TRIM28-206ENST00000595974 RASA1P20936 1047 aa19.33■□□□□ 0.68
TRIM28-206ENST00000595974 RGS19P49795 217 aa19.33■□□□□ 0.68
TRIM28-206ENST00000595974 MCMDC2Q4G0Z9 681 aa19.33■□□□□ 0.68
TRIM28-206ENST00000595974 CLEC10AQ8IUN9 316 aa19.33■□□□□ 0.68
TRIM28-206ENST00000595974 FAM227BQ96M60 508 aa19.33■□□□□ 0.68
TRIM28-206ENST00000595974 P2RX7Q99572 595 aaKnown RBP19.33■□□□□ 0.68
TRIM28-206ENST00000595974 KANSL2Q9H9L4 492 aa19.33■□□□□ 0.68
TRIM28-206ENST00000595974 TMX2Q9Y320 296 aa19.33■□□□□ 0.68
TRIM28-206ENST00000595974 A0A0G2JMZ2 1700 aa19.33■□□□□ 0.68
TRIM28-206ENST00000595974 TNPO2O14787 897 aaKnown RBP19.32■□□□□ 0.68
TRIM28-206ENST00000595974 FOXP2O15409 715 aa19.32■□□□□ 0.68
TRIM28-206ENST00000595974 SLC3A2P08195 630 aaKnown RBP19.32■□□□□ 0.68
TRIM28-206ENST00000595974 SOX10P56693 466 aa19.32■□□□□ 0.68
TRIM28-206ENST00000595974 NMIQ13287 307 aaPredicted RBP19.32■□□□□ 0.68
TRIM28-206ENST00000595974 CATSPERGQ6ZRH7 1159 aa19.32■□□□□ 0.68
TRIM28-206ENST00000595974 NBPF11Q86T75 865 aa19.32■□□□□ 0.68
TRIM28-206ENST00000595974 LPAR1Q92633 364 aa19.32■□□□□ 0.68
TRIM28-206ENST00000595974 LAMA4Q16363 1823 aa19.31■□□□□ 0.68
TRIM28-206ENST00000595974 PDE4AP27815 886 aa19.31■□□□□ 0.68
TRIM28-206ENST00000595974 PPARAQ07869 468 aa19.31■□□□□ 0.68
TRIM28-206ENST00000595974 SIAH1Q8IUQ4 282 aa19.31■□□□□ 0.68
TRIM28-206ENST00000595974 RAET1EQ8TD07 263 aa19.31■□□□□ 0.68
TRIM28-206ENST00000595974 ZNF333Q96JL9 665 aa19.31■□□□□ 0.68
TRIM28-206ENST00000595974 RPAP3Q9H6T3 665 aaPredicted RBP19.31■□□□□ 0.68
TRIM28-206ENST00000595974 PLIN4Q96Q06 1357 aa19.31■□□□□ 0.68
TRIM28-206ENST00000595974 PLXNB2O15031 1838 aa19.3■□□□□ 0.68
TRIM28-206ENST00000595974 ZMYM6O95789 1325 aa19.3■□□□□ 0.68
TRIM28-206ENST00000595974 CCDC171Q6TFL3 1326 aa19.3■□□□□ 0.68
TRIM28-206ENST00000595974 HIP1O00291 1037 aa19.3■□□□□ 0.68
TRIM28-206ENST00000595974 SDSP20132 328 aa19.3■□□□□ 0.68
TRIM28-206ENST00000595974 MFAP1P55081 439 aaKnown RBP19.3■□□□□ 0.68
TRIM28-206ENST00000595974 PRKCZQ05513 592 aa19.3■□□□□ 0.68
TRIM28-206ENST00000595974 PDE4BQ07343 736 aa19.3■□□□□ 0.68
TRIM28-206ENST00000595974 ALX1Q15699 326 aa19.3■□□□□ 0.68
TRIM28-206ENST00000595974 LBX2Q6XYB7 198 aa19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 134.3 ms