RNA–Protein interactions for RNA: ENST00000595726.1

SHKBP1-208, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 684 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-208ENST00000595726 CYBAP13498 195 aa16.97■□□□□ 0.31
SHKBP1-208ENST00000595726 TLE2Q04725 743 aa16.97■□□□□ 0.31
SHKBP1-208ENST00000595726 USP17L2Q6R6M4 530 aa16.97■□□□□ 0.31
SHKBP1-208ENST00000595726 MAPKAPK5Q8IW41 473 aa16.97■□□□□ 0.31
SHKBP1-208ENST00000595726 GTF3C2Q8WUA4 911 aaPredicted RBP16.97■□□□□ 0.31
SHKBP1-208ENST00000595726 PALD1Q9ULE6 856 aa16.97■□□□□ 0.31
SHKBP1-208ENST00000595726 IGHA2P01877 340 aa16.96■□□□□ 0.31
SHKBP1-208ENST00000595726 UBTFL1P0CB47 393 aaPredicted RBP16.96■□□□□ 0.31
SHKBP1-208ENST00000595726 CCNA1P78396 465 aa16.96■□□□□ 0.31
SHKBP1-208ENST00000595726 TFCP2Q12800 502 aa16.96■□□□□ 0.31
SHKBP1-208ENST00000595726 GRB14Q14449 540 aa16.96■□□□□ 0.31
SHKBP1-208ENST00000595726 SNX17Q15036 470 aa16.96■□□□□ 0.31
SHKBP1-208ENST00000595726 PRAMEF19Q5SWL8 479 aa16.96■□□□□ 0.31
SHKBP1-208ENST00000595726 CRACR2BQ8N4Y2 399 aaPredicted RBP16.96■□□□□ 0.31
SHKBP1-208ENST00000595726 SPATA5Q8NB90 893 aa16.96■□□□□ 0.31
SHKBP1-208ENST00000595726 TGFBRAP1Q8WUH2 860 aa16.96■□□□□ 0.31
SHKBP1-208ENST00000595726 SSH1Q8WYL5 1049 aa16.96■□□□□ 0.31
SHKBP1-208ENST00000595726 FAM122AQ96E09 287 aa16.96■□□□□ 0.31
SHKBP1-208ENST00000595726 NEUROD6Q96NK8 337 aa16.96■□□□□ 0.31
SHKBP1-208ENST00000595726 AATFQ9NY61 560 aaKnown RBP eCLIP16.96■□□□□ 0.31
SHKBP1-208ENST00000595726 SAP30BPQ9UHR5 308 aaKnown RBP16.96■□□□□ 0.31
SHKBP1-208ENST00000595726 RLFQ13129 1914 aa16.96■□□□□ 0.3
SHKBP1-208ENST00000595726 USP17L15C9J2P7 530 aa16.95■□□□□ 0.3
SHKBP1-208ENST00000595726 USP17L13C9JLJ4 530 aa16.95■□□□□ 0.3
SHKBP1-208ENST00000595726 USP17L11C9JVI0 530 aa16.95■□□□□ 0.3
SHKBP1-208ENST00000595726 USP17L18D6R9N7 530 aa16.95■□□□□ 0.3
SHKBP1-208ENST00000595726 USP17L22D6RA61 530 aa16.95■□□□□ 0.3
SHKBP1-208ENST00000595726 USP17L17D6RBQ6 530 aa16.95■□□□□ 0.3
SHKBP1-208ENST00000595726 USP17L19D6RCP7 530 aa16.95■□□□□ 0.3
SHKBP1-208ENST00000595726 USP17L20D6RJB6 530 aa16.95■□□□□ 0.3
SHKBP1-208ENST00000595726 DNAJB2P25686 324 aa16.95■□□□□ 0.3
SHKBP1-208ENST00000595726 USP17L24Q0WX57 530 aa16.95■□□□□ 0.3
SHKBP1-208ENST00000595726 DIEXFQ68CQ4 756 aaKnown RBP16.95■□□□□ 0.3
SHKBP1-208ENST00000595726 METTL16Q86W50 562 aaKnown RBP16.95■□□□□ 0.3
SHKBP1-208ENST00000595726 FOXP4Q8IVH2 680 aaPredicted RBP16.95■□□□□ 0.3
SHKBP1-208ENST00000595726 DHX36Q9H2U1 1008 aaKnown RBP16.95■□□□□ 0.3
SHKBP1-208ENST00000595726 CHD7Q9P2D1 2997 aa16.95■□□□□ 0.3
SHKBP1-208ENST00000595726 IVNS1ABPQ9Y6Y0 642 aa16.95■□□□□ 0.3
SHKBP1-208ENST00000595726 SIPA1L1O43166 1804 aa16.95■□□□□ 0.3
SHKBP1-208ENST00000595726 NCOR1O75376 2440 aa16.94■□□□□ 0.3
SHKBP1-208ENST00000595726 GH2P01242 217 aa16.94■□□□□ 0.3
SHKBP1-208ENST00000595726 MAP3K12Q12852 859 aa16.94■□□□□ 0.3
SHKBP1-208ENST00000595726 MVPQ14764 893 aaKnown RBP16.94■□□□□ 0.3
SHKBP1-208ENST00000595726 LRRC41Q15345 812 aa16.94■□□□□ 0.3
SHKBP1-208ENST00000595726 CATSPERGQ6ZRH7 1159 aa16.94■□□□□ 0.3
SHKBP1-208ENST00000595726 DPP9Q86TI2 863 aa16.94■□□□□ 0.3
SHKBP1-208ENST00000595726 TRIM34Q9BYJ4 488 aa16.94■□□□□ 0.3
SHKBP1-208ENST00000595726 ZNF576Q9H609 170 aa16.94■□□□□ 0.3
SHKBP1-208ENST00000595726 COPRSQ9NQ92 184 aa16.94■□□□□ 0.3
SHKBP1-208ENST00000595726 E9PSI1 815 aa16.93■□□□□ 0.3
SHKBP1-208ENST00000595726 ADAMTS19Q8TE59 1207 aa16.93■□□□□ 0.3
SHKBP1-208ENST00000595726 ASB2Q96Q27 587 aa16.93■□□□□ 0.3
SHKBP1-208ENST00000595726 FEZ1Q99689 392 aa16.93■□□□□ 0.3
SHKBP1-208ENST00000595726 LRP2BPQ9P2M1 347 aa16.93■□□□□ 0.3
SHKBP1-208ENST00000595726 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.92■□□□□ 0.3
SHKBP1-208ENST00000595726 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.92■□□□□ 0.3
SHKBP1-208ENST00000595726 SEPT4O43236 478 aa16.92■□□□□ 0.3
SHKBP1-208ENST00000595726 ADORA2AP29274 412 aa16.92■□□□□ 0.3
SHKBP1-208ENST00000595726 CCDC85BQ15834 202 aaPredicted RBP16.92■□□□□ 0.3
SHKBP1-208ENST00000595726 ADGRA1Q86SQ6 560 aa16.92■□□□□ 0.3
SHKBP1-208ENST00000595726 ACER1Q8TDN7 264 aa16.92■□□□□ 0.3
SHKBP1-208ENST00000595726 ATXN2LQ8WWM7 1075 aaKnown RBP16.92■□□□□ 0.3
SHKBP1-208ENST00000595726 NOL10Q9BSC4 688 aaKnown RBP16.92■□□□□ 0.3
SHKBP1-208ENST00000595726 TACC3Q9Y6A5 838 aa16.92■□□□□ 0.3
SHKBP1-208ENST00000595726 FLT1P17948 1338 aa16.92■□□□□ 0.3
SHKBP1-208ENST00000595726 COBLO75128 1261 aa16.91■□□□□ 0.3
SHKBP1-208ENST00000595726 RAG1P15918 1043 aa16.91■□□□□ 0.3
SHKBP1-208ENST00000595726 VCAM1P19320 739 aa16.91■□□□□ 0.3
SHKBP1-208ENST00000595726 FAM47AQ5JRC9 791 aa16.91■□□□□ 0.3
SHKBP1-208ENST00000595726 GORABQ5T7V8 394 aa16.91■□□□□ 0.3
SHKBP1-208ENST00000595726 MIER1Q8N108 512 aa16.91■□□□□ 0.3
SHKBP1-208ENST00000595726 TIFAQ96CG3 184 aa16.91■□□□□ 0.3
SHKBP1-208ENST00000595726 C12orf42Q96LP6 360 aa16.91■□□□□ 0.3
SHKBP1-208ENST00000595726 UHRF1Q96T88 793 aaPredicted RBP16.91■□□□□ 0.3
SHKBP1-208ENST00000595726 PRDM12Q9H4Q4 367 aa16.91■□□□□ 0.3
SHKBP1-208ENST00000595726 SNRKQ9NRH2 765 aa16.91■□□□□ 0.3
SHKBP1-208ENST00000595726 GINM1Q9NU53 330 aa16.91■□□□□ 0.3
SHKBP1-208ENST00000595726 AKAP2Q9Y2D5 859 aa16.91■□□□□ 0.3
SHKBP1-208ENST00000595726 SPDYE16A6NNV3 312 aaPredicted RBP16.9■□□□□ 0.3
SHKBP1-208ENST00000595726 GRXCR1A8MXD5 290 aa16.9■□□□□ 0.3
SHKBP1-208ENST00000595726 PQBP1O60828 265 aaKnown RBP16.9■□□□□ 0.3
SHKBP1-208ENST00000595726 CLTBP09497 229 aa16.9■□□□□ 0.3
SHKBP1-208ENST00000595726 PBX2P40425 430 aa16.9■□□□□ 0.3
SHKBP1-208ENST00000595726 MCAMP43121 646 aa16.9■□□□□ 0.3
SHKBP1-208ENST00000595726 SLFN5Q08AF3 891 aa16.9■□□□□ 0.3
SHKBP1-208ENST00000595726 C1orf53Q5VUE5 145 aa16.9■□□□□ 0.3
SHKBP1-208ENST00000595726 OLFML2BQ68BL8 750 aa16.9■□□□□ 0.3
SHKBP1-208ENST00000595726 NAA16Q6N069 864 aaPredicted RBP16.9■□□□□ 0.3
SHKBP1-208ENST00000595726 NECAB3Q96P71 396 aaPredicted RBP16.9■□□□□ 0.3
SHKBP1-208ENST00000595726 KIAA0355O15063 1070 aa16.89■□□□□ 0.29
SHKBP1-208ENST00000595726 BAG3O95817 575 aa16.89■□□□□ 0.29
SHKBP1-208ENST00000595726 HOXD11P31277 338 aaPredicted RBP16.89■□□□□ 0.29
SHKBP1-208ENST00000595726 PPP4CP60510 307 aa16.89■□□□□ 0.29
SHKBP1-208ENST00000595726 FPGSQ05932 587 aa16.89■□□□□ 0.29
SHKBP1-208ENST00000595726 RAB3GAP1Q15042 981 aa16.89■□□□□ 0.29
SHKBP1-208ENST00000595726 MOV10L1Q9BXT6 1211 aaKnown RBP16.89■□□□□ 0.29
SHKBP1-208ENST00000595726 RPAP3Q9H6T3 665 aaPredicted RBP16.89■□□□□ 0.29
SHKBP1-208ENST00000595726 TMEM39AQ9NV64 488 aa16.89■□□□□ 0.29
SHKBP1-208ENST00000595726 THEGQ9P2T0 379 aa16.89■□□□□ 0.29
SHKBP1-208ENST00000595726 ARID4AP29374 1257 aaPredicted RBP16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms