RNA–Protein interactions for RNA: ENST00000559389.1

SNX1-206, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 753 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-206ENST00000559389 MS4A4AQ96JQ5 239 aa25.65■■□□□ 1.7
SNX1-206ENST00000559389 CNNM2Q9H8M5 875 aa25.65■■□□□ 1.7
SNX1-206ENST00000559389 TRIM75PA6NK02 468 aa25.64■■□□□ 1.7
SNX1-206ENST00000559389 RANBP6O60518 1105 aaKnown RBP25.64■■□□□ 1.7
SNX1-206ENST00000559389 GTF2A2P52657 109 aa25.64■■□□□ 1.7
SNX1-206ENST00000559389 KIF23Q02241 960 aaPredicted RBP25.64■■□□□ 1.7
SNX1-206ENST00000559389 SPP2Q13103 211 aa25.64■■□□□ 1.7
SNX1-206ENST00000559389 RNF20Q5VTR2 975 aa25.64■■□□□ 1.7
SNX1-206ENST00000559389 ESR2Q92731 530 aa25.64■■□□□ 1.7
SNX1-206ENST00000559389 KANSL2Q9H9L4 492 aa25.64■■□□□ 1.7
SNX1-206ENST00000559389 A0A0G2JLL6 359 aaPredicted RBP25.63■■□□□ 1.69
SNX1-206ENST00000559389 B4E1Z4 1266 aa25.63■■□□□ 1.69
SNX1-206ENST00000559389 E7EWF7 191 aa25.63■■□□□ 1.69
SNX1-206ENST00000559389 HSPA4P34932 840 aa25.63■■□□□ 1.69
SNX1-206ENST00000559389 PRRT2Q7Z6L0 340 aaPredicted RBP25.63■■□□□ 1.69
SNX1-206ENST00000559389 KRT23Q9C075 422 aa25.63■■□□□ 1.69
SNX1-206ENST00000559389 TESPA1A2RU30 521 aaPredicted RBP25.62■■□□□ 1.69
SNX1-206ENST00000559389 EIF5BO60841 1220 aaKnown RBP25.62■■□□□ 1.69
SNX1-206ENST00000559389 MTMR2Q13614 643 aa25.62■■□□□ 1.69
SNX1-206ENST00000559389 SIAH1Q8IUQ4 282 aa25.62■■□□□ 1.69
SNX1-206ENST00000559389 ACER1Q8TDN7 264 aa25.62■■□□□ 1.69
SNX1-206ENST00000559389 CEP95Q96GE4 821 aa25.62■■□□□ 1.69
SNX1-206ENST00000559389 CCL15-CCL14A0A0B4J2E2 113 aa25.61■■□□□ 1.69
SNX1-206ENST00000559389 KDM4AO75164 1064 aa25.61■■□□□ 1.69
SNX1-206ENST00000559389 CETPP11597 493 aa25.61■■□□□ 1.69
SNX1-206ENST00000559389 BACE1P56817 501 aa25.61■■□□□ 1.69
SNX1-206ENST00000559389 SREBF2Q12772 1141 aa25.61■■□□□ 1.69
SNX1-206ENST00000559389 CCL15Q16663 113 aa25.61■■□□□ 1.69
SNX1-206ENST00000559389 SH3D19Q5HYK7 790 aa25.61■■□□□ 1.69
SNX1-206ENST00000559389 BRI3BPQ8WY22 251 aa25.61■■□□□ 1.69
SNX1-206ENST00000559389 KCNB2Q92953 911 aa25.61■■□□□ 1.69
SNX1-206ENST00000559389 FEZ1Q99689 392 aa25.61■■□□□ 1.69
SNX1-206ENST00000559389 USP26Q9BXU7 913 aa25.61■■□□□ 1.69
SNX1-206ENST00000559389 KIAA1683Q9H0B3 1180 aa25.61■■□□□ 1.69
SNX1-206ENST00000559389 ARHGEF10LQ9HCE6 1279 aa25.61■■□□□ 1.69
SNX1-206ENST00000559389 A0A1W2PRG0 241 aa25.6■■□□□ 1.69
SNX1-206ENST00000559389 USP17L10C9JJH3 530 aa25.6■■□□□ 1.69
SNX1-206ENST00000559389 EEF2P13639 858 aaKnown RBP25.6■■□□□ 1.69
SNX1-206ENST00000559389 MOGSQ13724 837 aa25.6■■□□□ 1.69
SNX1-206ENST00000559389 REM2Q8IYK8 340 aaPredicted RBP25.6■■□□□ 1.69
SNX1-206ENST00000559389 IL17RBQ9NRM6 502 aa25.6■■□□□ 1.69
SNX1-206ENST00000559389 MTMR4Q9NYA4 1195 aa25.6■■□□□ 1.69
SNX1-206ENST00000559389 NYAP2Q9P242 653 aa25.6■■□□□ 1.69
SNX1-206ENST00000559389 MYH4Q9Y623 1939 aa25.6■■□□□ 1.69
SNX1-206ENST00000559389 NMT2O60551 498 aa25.59■■□□□ 1.69
SNX1-206ENST00000559389 INHBEP58166 350 aa25.59■■□□□ 1.69
SNX1-206ENST00000559389 TRDNQ13061 729 aa25.59■■□□□ 1.69
SNX1-206ENST00000559389 TSGA10IPQ3SY00 556 aa25.59■■□□□ 1.69
SNX1-206ENST00000559389 RALYLQ86SE5 291 aaKnown RBP25.59■■□□□ 1.69
SNX1-206ENST00000559389 RASEFQ8IZ41 740 aa25.59■■□□□ 1.69
SNX1-206ENST00000559389 NCOA7Q8NI08 942 aa25.59■■□□□ 1.69
SNX1-206ENST00000559389 SH2D4AQ9H788 454 aa25.59■■□□□ 1.69
SNX1-206ENST00000559389 TCP11L1Q9NUJ3 509 aa25.59■■□□□ 1.69
SNX1-206ENST00000559389 TMX2Q9Y320 296 aa25.59■■□□□ 1.69
SNX1-206ENST00000559389 C19orf81C9J6K1 198 aa25.58■■□□□ 1.69
SNX1-206ENST00000559389 SEC24BO95487 1268 aa25.58■■□□□ 1.69
SNX1-206ENST00000559389 ZKSCAN1P17029 563 aaPredicted RBP25.58■■□□□ 1.69
SNX1-206ENST00000559389 TM4SF4P48230 202 aa25.58■■□□□ 1.69
SNX1-206ENST00000559389 NOVP48745 357 aa25.58■■□□□ 1.69
SNX1-206ENST00000559389 HMGCS2P54868 508 aa25.58■■□□□ 1.69
SNX1-206ENST00000559389 PPP4R3BQ5MIZ7 849 aa25.58■■□□□ 1.69
SNX1-206ENST00000559389 C12orf42Q96LP6 360 aa25.58■■□□□ 1.69
SNX1-206ENST00000559389 TTLL1O95922 423 aa25.57■■□□□ 1.68
SNX1-206ENST00000559389 DGKZQ13574 1117 aa25.57■■□□□ 1.68
SNX1-206ENST00000559389 MB21D2Q8IYB1 491 aaPredicted RBP25.57■■□□□ 1.68
SNX1-206ENST00000559389 JMYQ8N9B5 988 aa25.57■■□□□ 1.68
SNX1-206ENST00000559389 PROCA1Q8NCQ7 364 aaPredicted RBP25.57■■□□□ 1.68
SNX1-206ENST00000559389 ZSWIM5Q9P217 1185 aa25.57■■□□□ 1.68
SNX1-206ENST00000559389 SYNPO2Q9UMS6 1093 aa25.57■■□□□ 1.68
SNX1-206ENST00000559389 IGF2BP3O00425 579 aaKnown RBP eCLIP25.56■■□□□ 1.68
SNX1-206ENST00000559389 MCCP23508 829 aa25.56■■□□□ 1.68
SNX1-206ENST00000559389 USP14P54578 494 aa25.56■■□□□ 1.68
SNX1-206ENST00000559389 ATP2B2Q01814 1243 aa25.56■■□□□ 1.68
SNX1-206ENST00000559389 KRT32Q14532 448 aa25.56■■□□□ 1.68
SNX1-206ENST00000559389 ZYXQ15942 572 aaKnown RBP25.56■■□□□ 1.68
SNX1-206ENST00000559389 USP17L2Q6R6M4 530 aa25.56■■□□□ 1.68
SNX1-206ENST00000559389 GADL1Q6ZQY3 521 aa25.56■■□□□ 1.68
SNX1-206ENST00000559389 CYB5R4Q7L1T6 521 aa25.56■■□□□ 1.68
SNX1-206ENST00000559389 FASTKD5Q7L8L6 764 aaKnown RBP25.56■■□□□ 1.68
SNX1-206ENST00000559389 IFNL1Q8IU54 200 aa25.56■■□□□ 1.68
SNX1-206ENST00000559389 PTPN18Q99952 460 aa25.56■■□□□ 1.68
SNX1-206ENST00000559389 EMILIN3Q9NT22 766 aa25.56■■□□□ 1.68
SNX1-206ENST00000559389 SNX14Q9Y5W7 946 aa25.56■■□□□ 1.68
SNX1-206ENST00000559389 IQCA1Q86XH1 822 aa25.55■■□□□ 1.68
SNX1-206ENST00000559389 TMOD4Q9NZQ9 345 aa25.55■■□□□ 1.68
SNX1-206ENST00000559389 BTBD19C9JJ37 291 aa25.54■■□□□ 1.68
SNX1-206ENST00000559389 ANTXR2P58335 489 aa25.54■■□□□ 1.68
SNX1-206ENST00000559389 ADCK5Q3MIX3 580 aa25.54■■□□□ 1.68
SNX1-206ENST00000559389 GPAT2Q6NUI2 795 aa25.54■■□□□ 1.68
SNX1-206ENST00000559389 ANKRD23Q86SG2 305 aa25.54■■□□□ 1.68
SNX1-206ENST00000559389 LRRC47Q8N1G4 583 aaKnown RBP25.54■■□□□ 1.68
SNX1-206ENST00000559389 FAM43AQ8N2R8 423 aa25.54■■□□□ 1.68
SNX1-206ENST00000559389 MKL1Q969V6 931 aa25.54■■□□□ 1.68
SNX1-206ENST00000559389 ZKSCAN3Q9BRR0 538 aa25.54■■□□□ 1.68
SNX1-206ENST00000559389 VCPKMTQ9H867 229 aa25.54■■□□□ 1.68
SNX1-206ENST00000559389 ZCCHC17Q9NP64 241 aaKnown RBP25.54■■□□□ 1.68
SNX1-206ENST00000559389 CLIP2Q9UDT6 1046 aa25.54■■□□□ 1.68
SNX1-206ENST00000559389 STX8Q9UNK0 236 aa25.54■■□□□ 1.68
SNX1-206ENST00000559389 AGTPBP1Q9UPW5 1226 aa25.54■■□□□ 1.68
SNX1-206ENST00000559389 TNKSO95271 1327 aa25.54■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms