RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 CYP4F12Q9HCS2 524 aa7.96□□□□□ -1.14
VPS29-210ENST00000552130 ATP8A1Q9Y2Q0 1164 aa7.96□□□□□ -1.14
VPS29-210ENST00000552130 MRVI1Q9Y6F6 885 aa7.96□□□□□ -1.14
VPS29-210ENST00000552130 EPB41L2O43491 1005 aaKnown RBP7.95□□□□□ -1.14
VPS29-210ENST00000552130 C8AP07357 584 aa7.95□□□□□ -1.14
VPS29-210ENST00000552130 COPB2P35606 906 aa7.95□□□□□ -1.14
VPS29-210ENST00000552130 NASPP49321 788 aaPredicted RBP7.95□□□□□ -1.14
VPS29-210ENST00000552130 RAPGEF1Q13905 1077 aa7.95□□□□□ -1.14
VPS29-210ENST00000552130 HLTFQ14527 1009 aaKnown RBP eCLIP7.95□□□□□ -1.14
VPS29-210ENST00000552130 MAPRE1Q15691 268 aaKnown RBP7.95□□□□□ -1.14
VPS29-210ENST00000552130 EFCAB2Q5VUJ9 269 aa7.95□□□□□ -1.14
VPS29-210ENST00000552130 RINLQ6ZS11 566 aa7.95□□□□□ -1.14
VPS29-210ENST00000552130 PDILTQ8N807 584 aa7.95□□□□□ -1.14
VPS29-210ENST00000552130 C2CD4AQ8NCU7 369 aaPredicted RBP7.95□□□□□ -1.14
VPS29-210ENST00000552130 PMEPA1Q969W9 287 aa7.95□□□□□ -1.14
VPS29-210ENST00000552130 ASIC4Q96FT7 647 aa7.95□□□□□ -1.14
VPS29-210ENST00000552130 DNAJC7Q99615 494 aa7.95□□□□□ -1.14
VPS29-210ENST00000552130 NRSN2Q9GZP1 204 aa7.95□□□□□ -1.14
VPS29-210ENST00000552130 ZNF700Q9H0M5 742 aa7.95□□□□□ -1.14
VPS29-210ENST00000552130 TMEM260Q9NX78 707 aa7.95□□□□□ -1.14
VPS29-210ENST00000552130 SPG7Q9UQ90 795 aa7.95□□□□□ -1.14
VPS29-210ENST00000552130 JUNBP17275 347 aaPredicted RBP7.94□□□□□ -1.14
VPS29-210ENST00000552130 RXRBP28702 533 aa7.94□□□□□ -1.14
VPS29-210ENST00000552130 CNGA1P29973 690 aa7.94□□□□□ -1.14
VPS29-210ENST00000552130 IKBKEQ14164 716 aa7.94□□□□□ -1.14
VPS29-210ENST00000552130 TTF1Q15361 905 aaPredicted RBP7.94□□□□□ -1.14
VPS29-210ENST00000552130 TKFCQ3LXA3 575 aa7.94□□□□□ -1.14
VPS29-210ENST00000552130 EXOSC6Q5RKV6 272 aaKnown RBP7.94□□□□□ -1.14
VPS29-210ENST00000552130 PAOXQ6QHF9 649 aa7.94□□□□□ -1.14
VPS29-210ENST00000552130 ZAR1Q86SH2 424 aa7.94□□□□□ -1.14
VPS29-210ENST00000552130 FBLIM1Q8WUP2 373 aa7.94□□□□□ -1.14
VPS29-210ENST00000552130 EDEM1Q92611 657 aa7.94□□□□□ -1.14
VPS29-210ENST00000552130 ZKSCAN3Q9BRR0 538 aa7.94□□□□□ -1.14
VPS29-210ENST00000552130 ZHX3Q9H4I2 956 aa7.94□□□□□ -1.14
VPS29-210ENST00000552130 USP31Q70CQ4 1352 aa7.94□□□□□ -1.14
VPS29-210ENST00000552130 NPHP1O15259 732 aa7.93□□□□□ -1.14
VPS29-210ENST00000552130 PDGFAP04085 211 aa7.93□□□□□ -1.14
VPS29-210ENST00000552130 PTMAP06454 111 aaKnown RBP7.93□□□□□ -1.14
VPS29-210ENST00000552130 COL6A1P12109 1028 aa7.93□□□□□ -1.14
VPS29-210ENST00000552130 DRD2P14416 443 aa7.93□□□□□ -1.14
VPS29-210ENST00000552130 ATF3P18847 181 aa7.93□□□□□ -1.14
VPS29-210ENST00000552130 POU5F1Q01860 360 aaKnown RBP7.93□□□□□ -1.14
VPS29-210ENST00000552130 LRRC41Q15345 812 aa7.93□□□□□ -1.14
VPS29-210ENST00000552130 ERMP1Q7Z2K6 904 aa7.93□□□□□ -1.14
VPS29-210ENST00000552130 RUNDC1Q96C34 613 aa7.93□□□□□ -1.14
VPS29-210ENST00000552130 OSMRQ99650 979 aa7.93□□□□□ -1.14
VPS29-210ENST00000552130 BHLHE41Q9C0J9 482 aaPredicted RBP7.93□□□□□ -1.14
VPS29-210ENST00000552130 PAK6Q9NQU5 681 aaPredicted RBP7.93□□□□□ -1.14
VPS29-210ENST00000552130 R3HCC1Q9Y3T6 440 aaKnown RBP7.93□□□□□ -1.14
VPS29-210ENST00000552130 A6NHS1 94 aa7.92□□□□□ -1.14
VPS29-210ENST00000552130 PCSK2P16519 638 aa7.92□□□□□ -1.14
VPS29-210ENST00000552130 CALRP27797 417 aaKnown RBP7.92□□□□□ -1.14
VPS29-210ENST00000552130 SQSTM1Q13501 440 aa7.92□□□□□ -1.14
VPS29-210ENST00000552130 NFKBIBQ15653 356 aa7.92□□□□□ -1.14
VPS29-210ENST00000552130 C10orf62Q5T681 223 aaPredicted RBP7.92□□□□□ -1.14
VPS29-210ENST00000552130 SDR16C5Q8N3Y7 309 aa7.92□□□□□ -1.14
VPS29-210ENST00000552130 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.92□□□□□ -1.14
VPS29-210ENST00000552130 LDHAL6BQ9BYZ2 381 aaPredicted RBP7.92□□□□□ -1.14
VPS29-210ENST00000552130 STRIP2Q9ULQ0 834 aa7.92□□□□□ -1.14
VPS29-210ENST00000552130 LZTS1Q9Y250 596 aa7.92□□□□□ -1.14
VPS29-210ENST00000552130 ALG1L2C9J202 215 aa7.91□□□□□ -1.14
VPS29-210ENST00000552130 TBX3O15119 743 aa7.91□□□□□ -1.14
VPS29-210ENST00000552130 CYP26A1O43174 497 aa7.91□□□□□ -1.14
VPS29-210ENST00000552130 SCGB1D2O95969 90 aa7.91□□□□□ -1.14
VPS29-210ENST00000552130 ESRRAP11474 423 aaPredicted RBP7.91□□□□□ -1.14
VPS29-210ENST00000552130 SOX4Q06945 474 aaPredicted RBP7.91□□□□□ -1.14
VPS29-210ENST00000552130 IFRD2Q12894 506 aaPredicted RBP7.91□□□□□ -1.14
VPS29-210ENST00000552130 L1TD1Q5T7N2 865 aaKnown RBP7.91□□□□□ -1.14
VPS29-210ENST00000552130 TP53INP2Q8IXH6 220 aa7.91□□□□□ -1.14
VPS29-210ENST00000552130 C1orf131Q8NDD1 294 aaKnown RBP7.91□□□□□ -1.14
VPS29-210ENST00000552130 CXorf38Q8TB03 319 aa7.91□□□□□ -1.14
VPS29-210ENST00000552130 CSRNP1Q96S65 589 aa7.91□□□□□ -1.14
VPS29-210ENST00000552130 USP26Q9BXU7 913 aa7.91□□□□□ -1.14
VPS29-210ENST00000552130 CCDC113Q9H0I3 377 aa7.91□□□□□ -1.14
VPS29-210ENST00000552130 COPRSQ9NQ92 184 aa7.91□□□□□ -1.14
VPS29-210ENST00000552130 INTUQ9ULD6 942 aa7.91□□□□□ -1.14
VPS29-210ENST00000552130 TPX2Q9ULW0 747 aaKnown RBP7.91□□□□□ -1.14
VPS29-210ENST00000552130 KAT6BQ8WYB5 2073 aa7.9□□□□□ -1.14
VPS29-210ENST00000552130 EREGO14944 169 aa7.9□□□□□ -1.14
VPS29-210ENST00000552130 KCNQ2O43526 872 aa7.9□□□□□ -1.14
VPS29-210ENST00000552130 TAF1CQ15572 869 aaPredicted RBP7.9□□□□□ -1.14
VPS29-210ENST00000552130 MEI1Q5TIA1 1274 aa7.9□□□□□ -1.14
VPS29-210ENST00000552130 ICE2Q659A1 982 aa7.9□□□□□ -1.14
VPS29-210ENST00000552130 CCDC174Q6PII3 467 aa7.9□□□□□ -1.14
VPS29-210ENST00000552130 GJD3Q8N144 294 aa7.9□□□□□ -1.14
VPS29-210ENST00000552130 SVIPQ8NHG7 77 aa7.9□□□□□ -1.14
VPS29-210ENST00000552130 TBC1D32Q96NH3 1257 aa7.9□□□□□ -1.14
VPS29-210ENST00000552130 SPON2Q9BUD6 331 aa7.9□□□□□ -1.14
VPS29-210ENST00000552130 FAM126AQ9BYI3 521 aaPredicted RBP7.9□□□□□ -1.14
VPS29-210ENST00000552130 EFR3BQ9Y2G0 817 aa7.9□□□□□ -1.14
VPS29-210ENST00000552130 MSRB2Q9Y3D2 182 aa7.9□□□□□ -1.14
VPS29-210ENST00000552130 SHTN1A0MZ66 631 aa7.89□□□□□ -1.15
VPS29-210ENST00000552130 FAM170BA6NMN3 283 aa7.89□□□□□ -1.15
VPS29-210ENST00000552130 POU3F3P20264 500 aaPredicted RBP7.89□□□□□ -1.15
VPS29-210ENST00000552130 PMLP29590 882 aa7.89□□□□□ -1.15
VPS29-210ENST00000552130 USP11P51784 963 aa7.89□□□□□ -1.15
VPS29-210ENST00000552130 DNM1Q05193 864 aaKnown RBP7.89□□□□□ -1.15
VPS29-210ENST00000552130 TMEM95Q3KNT9 176 aa7.89□□□□□ -1.15
VPS29-210ENST00000552130 LCE4AQ5TA78 99 aa7.89□□□□□ -1.15
VPS29-210ENST00000552130 KSR2Q6VAB6 950 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 629 ms