RNA–Protein interactions for RNA: ENST00000550841.1

NEK3-202, Transcript of NIMA related kinase 3, humanhuman

TSL 4

Gene NEK3, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-202ENST00000550841 CNKSR2Q8WXI2 1034 aa25.35■■□□□ 1.65
NEK3-202ENST00000550841 ABHD8Q96I13 439 aa25.35■■□□□ 1.65
NEK3-202ENST00000550841 MANSC4A6NHS7 340 aaPredicted RBP25.34■■□□□ 1.65
NEK3-202ENST00000550841 IRF6O14896 467 aa25.34■■□□□ 1.65
NEK3-202ENST00000550841 MCCP23508 829 aa25.34■■□□□ 1.65
NEK3-202ENST00000550841 SNAPC2Q13487 334 aa25.34■■□□□ 1.65
NEK3-202ENST00000550841 FAM47AQ5JRC9 791 aa25.34■■□□□ 1.65
NEK3-202ENST00000550841 USP26Q9BXU7 913 aa25.34■■□□□ 1.65
NEK3-202ENST00000550841 TSKSQ9UJT2 592 aa25.34■■□□□ 1.65
NEK3-202ENST00000550841 KCNH4Q9UQ05 1017 aa25.34■■□□□ 1.65
NEK3-202ENST00000550841 TACC3Q9Y6A5 838 aa25.34■■□□□ 1.65
NEK3-202ENST00000550841 LAMA4Q16363 1823 aa25.34■■□□□ 1.65
NEK3-202ENST00000550841 ATAD5Q96QE3 1844 aa25.34■■□□□ 1.65
NEK3-202ENST00000550841 GUCY1A2P33402 732 aa25.33■■□□□ 1.65
NEK3-202ENST00000550841 GJA5P36382 358 aa25.33■■□□□ 1.65
NEK3-202ENST00000550841 MKRN3Q13064 507 aaKnown RBP25.33■■□□□ 1.65
NEK3-202ENST00000550841 SPP2Q13103 211 aa25.33■■□□□ 1.65
NEK3-202ENST00000550841 CCDC178Q5BJE1 867 aa25.33■■□□□ 1.65
NEK3-202ENST00000550841 NCOA7Q8NI08 942 aa25.33■■□□□ 1.65
NEK3-202ENST00000550841 ARHGEF10LQ9HCE6 1279 aa25.33■■□□□ 1.65
NEK3-202ENST00000550841 C19orf81C9J6K1 198 aa25.32■■□□□ 1.64
NEK3-202ENST00000550841 E7EWF7 191 aa25.32■■□□□ 1.64
NEK3-202ENST00000550841 CETPP11597 493 aa25.32■■□□□ 1.64
NEK3-202ENST00000550841 HSPA4P34932 840 aa25.32■■□□□ 1.64
NEK3-202ENST00000550841 ICA1Q05084 483 aa25.32■■□□□ 1.64
NEK3-202ENST00000550841 KRT32Q14532 448 aa25.32■■□□□ 1.64
NEK3-202ENST00000550841 SHROOM1Q2M3G4 852 aaPredicted RBP25.32■■□□□ 1.64
NEK3-202ENST00000550841 TSGA10IPQ3SY00 556 aa25.32■■□□□ 1.64
NEK3-202ENST00000550841 C8orf34Q49A92 452 aa25.32■■□□□ 1.64
NEK3-202ENST00000550841 RALYLQ86SE5 291 aaKnown RBP25.32■■□□□ 1.64
NEK3-202ENST00000550841 SH2D4AQ9H788 454 aa25.32■■□□□ 1.64
NEK3-202ENST00000550841 TCP11L1Q9NUJ3 509 aa25.32■■□□□ 1.64
NEK3-202ENST00000550841 PLIN4Q96Q06 1357 aa25.31■■□□□ 1.64
NEK3-202ENST00000550841 THSD7BQ9C0I4 1608 aa25.31■■□□□ 1.64
NEK3-202ENST00000550841 USP17L10C9JJH3 530 aa25.31■■□□□ 1.64
NEK3-202ENST00000550841 KIF23Q02241 960 aaPredicted RBP25.31■■□□□ 1.64
NEK3-202ENST00000550841 SREBF2Q12772 1141 aa25.31■■□□□ 1.64
NEK3-202ENST00000550841 IQCA1Q86XH1 822 aa25.31■■□□□ 1.64
NEK3-202ENST00000550841 GNL3Q9BVP2 549 aaKnown RBP eCLIP25.31■■□□□ 1.64
NEK3-202ENST00000550841 FRMD4AQ9P2Q2 1039 aaPredicted RBP25.31■■□□□ 1.64
NEK3-202ENST00000550841 TRIM75PA6NK02 468 aa25.3■■□□□ 1.64
NEK3-202ENST00000550841 USP14P54578 494 aa25.3■■□□□ 1.64
NEK3-202ENST00000550841 BACE1P56817 501 aa25.3■■□□□ 1.64
NEK3-202ENST00000550841 FASTKD5Q7L8L6 764 aaKnown RBP25.3■■□□□ 1.64
NEK3-202ENST00000550841 CCDC84Q86UT8 332 aaPredicted RBP25.3■■□□□ 1.64
NEK3-202ENST00000550841 KCNB2Q92953 911 aa25.3■■□□□ 1.64
NEK3-202ENST00000550841 MTMR4Q9NYA4 1195 aa25.3■■□□□ 1.64
NEK3-202ENST00000550841 NYAP2Q9P242 653 aa25.3■■□□□ 1.64
NEK3-202ENST00000550841 NEDD4P46934 1319 aa25.3■■□□□ 1.64
NEK3-202ENST00000550841 IGKV6D-41A0A0C4DH26 115 aa25.29■■□□□ 1.64
NEK3-202ENST00000550841 B4E1Z4 1266 aa25.29■■□□□ 1.64
NEK3-202ENST00000550841 KDM4AO75164 1064 aa25.29■■□□□ 1.64
NEK3-202ENST00000550841 MS4A4AQ96JQ5 239 aa25.29■■□□□ 1.64
NEK3-202ENST00000550841 FEZ1Q99689 392 aa25.29■■□□□ 1.64
NEK3-202ENST00000550841 ZSWIM5Q9P217 1185 aa25.29■■□□□ 1.64
NEK3-202ENST00000550841 TESPA1A2RU30 521 aaPredicted RBP25.28■■□□□ 1.64
NEK3-202ENST00000550841 TTLL1O95922 423 aa25.28■■□□□ 1.64
NEK3-202ENST00000550841 EEF2P13639 858 aaKnown RBP25.28■■□□□ 1.64
NEK3-202ENST00000550841 TM4SF4P48230 202 aa25.28■■□□□ 1.64
NEK3-202ENST00000550841 ATP2B2Q01814 1243 aa25.28■■□□□ 1.64
NEK3-202ENST00000550841 SH3D19Q5HYK7 790 aa25.28■■□□□ 1.64
NEK3-202ENST00000550841 OTUD7BQ6GQQ9 843 aa25.28■■□□□ 1.64
NEK3-202ENST00000550841 USP17L2Q6R6M4 530 aa25.28■■□□□ 1.64
NEK3-202ENST00000550841 CEP95Q96GE4 821 aa25.28■■□□□ 1.64
NEK3-202ENST00000550841 TTC14Q96N46 770 aa25.28■■□□□ 1.64
NEK3-202ENST00000550841 KIAA1683Q9H0B3 1180 aa25.28■■□□□ 1.64
NEK3-202ENST00000550841 TMOD4Q9NZQ9 345 aa25.28■■□□□ 1.64
NEK3-202ENST00000550841 SYNPO2Q9UMS6 1093 aa25.28■■□□□ 1.64
NEK3-202ENST00000550841 CCL15-CCL14A0A0B4J2E2 113 aa25.27■■□□□ 1.64
NEK3-202ENST00000550841 A0A0G2JLL6 359 aaPredicted RBP25.27■■□□□ 1.64
NEK3-202ENST00000550841 CCL15Q16663 113 aa25.27■■□□□ 1.64
NEK3-202ENST00000550841 PRRT2Q7Z6L0 340 aaPredicted RBP25.27■■□□□ 1.64
NEK3-202ENST00000550841 MKL1Q969V6 931 aa25.27■■□□□ 1.64
NEK3-202ENST00000550841 CLIP2Q9UDT6 1046 aa25.27■■□□□ 1.64
NEK3-202ENST00000550841 TMX2Q9Y320 296 aa25.27■■□□□ 1.64
NEK3-202ENST00000550841 PHIPQ8WWQ0 1821 aa25.26■■□□□ 1.63
NEK3-202ENST00000550841 MTMR2Q13614 643 aa25.26■■□□□ 1.63
NEK3-202ENST00000550841 STOX1Q6ZVD7 989 aa25.26■■□□□ 1.63
NEK3-202ENST00000550841 SIAH1Q8IUQ4 282 aa25.26■■□□□ 1.63
NEK3-202ENST00000550841 PROCA1Q8NCQ7 364 aaPredicted RBP25.26■■□□□ 1.63
NEK3-202ENST00000550841 ACER1Q8TDN7 264 aa25.26■■□□□ 1.63
NEK3-202ENST00000550841 UBAC1Q9BSL1 405 aa25.26■■□□□ 1.63
NEK3-202ENST00000550841 IL17RBQ9NRM6 502 aa25.26■■□□□ 1.63
NEK3-202ENST00000550841 CCDC85CA6NKD9 419 aa25.25■■□□□ 1.63
NEK3-202ENST00000550841 HMGB1P09429 215 aaKnown RBP25.25■■□□□ 1.63
NEK3-202ENST00000550841 DGKHQ86XP1 1220 aa25.25■■□□□ 1.63
NEK3-202ENST00000550841 RASEFQ8IZ41 740 aa25.25■■□□□ 1.63
NEK3-202ENST00000550841 NEK1Q96PY6 1258 aa25.25■■□□□ 1.63
NEK3-202ENST00000550841 TAF6LQ9Y6J9 622 aa25.25■■□□□ 1.63
NEK3-202ENST00000550841 SEC24BO95487 1268 aa25.24■■□□□ 1.63
NEK3-202ENST00000550841 PSMA5P28066 241 aa25.24■■□□□ 1.63
NEK3-202ENST00000550841 MCM5P33992 734 aa25.24■■□□□ 1.63
NEK3-202ENST00000550841 HMGCS2P54868 508 aa25.24■■□□□ 1.63
NEK3-202ENST00000550841 SART3Q15020 963 aaKnown RBP25.24■■□□□ 1.63
NEK3-202ENST00000550841 GADL1Q6ZQY3 521 aa25.24■■□□□ 1.63
NEK3-202ENST00000550841 ZSCAN10Q96SZ4 725 aaPredicted RBP25.24■■□□□ 1.63
NEK3-202ENST00000550841 ZIC5Q96T25 663 aa25.24■■□□□ 1.63
NEK3-202ENST00000550841 MTA3Q9BTC8 594 aa25.24■■□□□ 1.63
NEK3-202ENST00000550841 UPF2Q9HAU5 1272 aaKnown RBP25.24■■□□□ 1.63
NEK3-202ENST00000550841 GOPCQ9HD26 462 aa25.24■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms