RNA–Protein interactions for RNA: ENST00000544429.5

DDX55-211, Transcript of DEAD-box helicase 55, humanhuman

TSL 4

Gene DDX55, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-211ENST00000544429 MTMR2Q13614 643 aa22.77■■□□□ 1.24
DDX55-211ENST00000544429 RAB3GAP1Q15042 981 aa22.77■■□□□ 1.24
DDX55-211ENST00000544429 RUFY2Q8WXA3 655 aa22.77■■□□□ 1.24
DDX55-211ENST00000544429 NBPF3Q9H094 633 aa22.77■■□□□ 1.24
DDX55-211ENST00000544429 KIAA1683Q9H0B3 1180 aa22.77■■□□□ 1.24
DDX55-211ENST00000544429 PLIN4Q96Q06 1357 aa22.76■■□□□ 1.23
DDX55-211ENST00000544429 HMGCS2P54868 508 aa22.76■■□□□ 1.23
DDX55-211ENST00000544429 ACER1Q8TDN7 264 aa22.76■■□□□ 1.23
DDX55-211ENST00000544429 C12orf42Q96LP6 360 aa22.76■■□□□ 1.23
DDX55-211ENST00000544429 ZNF287Q9HBT7 754 aa22.76■■□□□ 1.23
DDX55-211ENST00000544429 AGTPBP1Q9UPW5 1226 aa22.76■■□□□ 1.23
DDX55-211ENST00000544429 ADGRA2Q96PE1 1338 aa22.76■■□□□ 1.23
DDX55-211ENST00000544429 IGKV6D-41A0A0C4DH26 115 aa22.75■■□□□ 1.23
DDX55-211ENST00000544429 A0A1W2PRG0 241 aa22.75■■□□□ 1.23
DDX55-211ENST00000544429 PDHXO00330 501 aa22.75■■□□□ 1.23
DDX55-211ENST00000544429 CTDSPL2Q05D32 466 aa22.75■■□□□ 1.23
DDX55-211ENST00000544429 PDE4BQ07343 736 aa22.75■■□□□ 1.23
DDX55-211ENST00000544429 DGKZQ13574 1117 aa22.75■■□□□ 1.23
DDX55-211ENST00000544429 MKNK2Q9HBH9 465 aa22.75■■□□□ 1.23
DDX55-211ENST00000544429 EMILIN3Q9NT22 766 aa22.75■■□□□ 1.23
DDX55-211ENST00000544429 MPHOSPH10O00566 681 aaKnown RBP22.74■■□□□ 1.23
DDX55-211ENST00000544429 ORC4O43929 436 aa22.74■■□□□ 1.23
DDX55-211ENST00000544429 PRDM1O75626 825 aa22.74■■□□□ 1.23
DDX55-211ENST00000544429 SLC3A2P08195 630 aaKnown RBP22.74■■□□□ 1.23
DDX55-211ENST00000544429 TREML2Q5T2D2 321 aa22.74■■□□□ 1.23
DDX55-211ENST00000544429 GPR25O00155 361 aa22.73■■□□□ 1.23
DDX55-211ENST00000544429 TAF1CQ15572 869 aaPredicted RBP22.73■■□□□ 1.23
DDX55-211ENST00000544429 GADL1Q6ZQY3 521 aa22.73■■□□□ 1.23
DDX55-211ENST00000544429 CLEC10AQ8IUN9 316 aa22.73■■□□□ 1.23
DDX55-211ENST00000544429 STK11IPQ8N1F8 1099 aa22.73■■□□□ 1.23
DDX55-211ENST00000544429 KANSL2Q9H9L4 492 aa22.73■■□□□ 1.23
DDX55-211ENST00000544429 MYH4Q9Y623 1939 aa22.72■■□□□ 1.23
DDX55-211ENST00000544429 TLR2O60603 784 aa22.72■■□□□ 1.23
DDX55-211ENST00000544429 PCP11498 1178 aaKnown RBP22.72■■□□□ 1.23
DDX55-211ENST00000544429 HOXA7P31268 230 aaPredicted RBP22.72■■□□□ 1.23
DDX55-211ENST00000544429 ICA1Q05084 483 aa22.72■■□□□ 1.23
DDX55-211ENST00000544429 USP17L2Q6R6M4 530 aa22.72■■□□□ 1.23
DDX55-211ENST00000544429 NEDD1Q8NHV4 660 aa22.72■■□□□ 1.23
DDX55-211ENST00000544429 ZFYVE28Q9HCC9 887 aa22.72■■□□□ 1.23
DDX55-211ENST00000544429 INCENPQ9NQS7 918 aa22.72■■□□□ 1.23
DDX55-211ENST00000544429 TMX2Q9Y320 296 aa22.72■■□□□ 1.23
DDX55-211ENST00000544429 USP14P54578 494 aa22.71■■□□□ 1.23
DDX55-211ENST00000544429 PTH1RQ03431 593 aa22.71■■□□□ 1.23
DDX55-211ENST00000544429 TBC1D10CQ8IV04 446 aa22.71■■□□□ 1.23
DDX55-211ENST00000544429 ZNF444Q8N0Y2 327 aaPredicted RBP22.71■■□□□ 1.23
DDX55-211ENST00000544429 STAG1Q8WVM7 1258 aa22.71■■□□□ 1.23
DDX55-211ENST00000544429 ESYT1Q9BSJ8 1104 aa22.71■■□□□ 1.23
DDX55-211ENST00000544429 HAND2P61296 217 aa22.7■■□□□ 1.22
DDX55-211ENST00000544429 AKNAD1Q5T1N1 836 aa22.7■■□□□ 1.22
DDX55-211ENST00000544429 C17orf99Q6UX52 265 aa22.7■■□□□ 1.22
DDX55-211ENST00000544429 ZNF296Q8WUU4 475 aaPredicted RBP22.7■■□□□ 1.22
DDX55-211ENST00000544429 TMOD4Q9NZQ9 345 aa22.7■■□□□ 1.22
DDX55-211ENST00000544429 CTNNA3Q9UI47 895 aa22.7■■□□□ 1.22
DDX55-211ENST00000544429 RLFQ13129 1914 aa22.7■■□□□ 1.22
DDX55-211ENST00000544429 PARP14Q460N5 1801 aa22.69■■□□□ 1.22
DDX55-211ENST00000544429 EEF2P13639 858 aaKnown RBP22.69■■□□□ 1.22
DDX55-211ENST00000544429 NOVP48745 357 aa22.69■■□□□ 1.22
DDX55-211ENST00000544429 MAP4K1Q92918 833 aa22.69■■□□□ 1.22
DDX55-211ENST00000544429 PARK7Q99497 189 aaKnown RBP22.69■■□□□ 1.22
DDX55-211ENST00000544429 MTMR4Q9NYA4 1195 aa22.69■■□□□ 1.22
DDX55-211ENST00000544429 NYAP2Q9P242 653 aa22.69■■□□□ 1.22
DDX55-211ENST00000544429 ZNF213O14771 459 aa22.68■■□□□ 1.22
DDX55-211ENST00000544429 CDC45O75419 566 aa22.68■■□□□ 1.22
DDX55-211ENST00000544429 CYP2C8P10632 490 aa22.68■■□□□ 1.22
DDX55-211ENST00000544429 TFAP4Q01664 338 aa22.68■■□□□ 1.22
DDX55-211ENST00000544429 KIAA1755Q5JYT7 1200 aa22.68■■□□□ 1.22
DDX55-211ENST00000544429 NKX2-3Q8TAU0 364 aa22.68■■□□□ 1.22
DDX55-211ENST00000544429 MKL1Q969V6 931 aa22.68■■□□□ 1.22
DDX55-211ENST00000544429 CEP95Q96GE4 821 aa22.68■■□□□ 1.22
DDX55-211ENST00000544429 FEZ1Q99689 392 aa22.68■■□□□ 1.22
DDX55-211ENST00000544429 LSG1Q9H089 658 aaKnown RBP22.68■■□□□ 1.22
DDX55-211ENST00000544429 ARHGEF10LQ9HCE6 1279 aa22.68■■□□□ 1.22
DDX55-211ENST00000544429 BCRP11274 1271 aa22.67■■□□□ 1.22
DDX55-211ENST00000544429 VCAM1P19320 739 aa22.67■■□□□ 1.22
DDX55-211ENST00000544429 NT5C2P49902 561 aa22.67■■□□□ 1.22
DDX55-211ENST00000544429 PABPC4Q13310 644 aaKnown RBP eCLIP22.67■■□□□ 1.22
DDX55-211ENST00000544429 FAM47AQ5JRC9 791 aa22.67■■□□□ 1.22
DDX55-211ENST00000544429 COL13A1Q5TAT6 717 aaPredicted RBP22.67■■□□□ 1.22
DDX55-211ENST00000544429 ASCC2Q9H1I8 757 aaPredicted RBP22.67■■□□□ 1.22
DDX55-211ENST00000544429 VCPKMTQ9H867 229 aa22.67■■□□□ 1.22
DDX55-211ENST00000544429 IL17RBQ9NRM6 502 aa22.67■■□□□ 1.22
DDX55-211ENST00000544429 SYNPO2Q9UMS6 1093 aa22.67■■□□□ 1.22
DDX55-211ENST00000544429 FKTNO75072 461 aa22.66■■□□□ 1.22
DDX55-211ENST00000544429 TSPY3P0CV98 308 aa22.66■■□□□ 1.22
DDX55-211ENST00000544429 TSPY8P0CW00 308 aa22.66■■□□□ 1.22
DDX55-211ENST00000544429 ZYXQ15942 572 aaKnown RBP22.66■■□□□ 1.22
DDX55-211ENST00000544429 IMMTQ16891 758 aaKnown RBP22.66■■□□□ 1.22
DDX55-211ENST00000544429 LPAR1Q92633 364 aa22.66■■□□□ 1.22
DDX55-211ENST00000544429 RNF41Q9H4P4 317 aaPredicted RBP22.66■■□□□ 1.22
DDX55-211ENST00000544429 SH2D4AQ9H788 454 aa22.66■■□□□ 1.22
DDX55-211ENST00000544429 PNMA3Q9UL41 463 aa22.66■■□□□ 1.22
DDX55-211ENST00000544429 U3KPZ7 1027 aaPredicted RBP22.66■■□□□ 1.22
DDX55-211ENST00000544429 NEDD4P46934 1319 aa22.65■■□□□ 1.22
DDX55-211ENST00000544429 CAP1Q01518 475 aa22.65■■□□□ 1.22
DDX55-211ENST00000544429 MFSD6Q6ZSS7 791 aa22.65■■□□□ 1.22
DDX55-211ENST00000544429 TCP11L1Q9NUJ3 509 aa22.65■■□□□ 1.22
DDX55-211ENST00000544429 TTLL1O95922 423 aa22.64■■□□□ 1.21
DDX55-211ENST00000544429 CYP21A2P08686 494 aa22.64■■□□□ 1.21
DDX55-211ENST00000544429 SP3Q02447 781 aa22.64■■□□□ 1.21
DDX55-211ENST00000544429 POTEEQ6S8J3 1075 aa22.64■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms