RNA–Protein interactions for RNA: ENST00000519895.5

MCF2-208, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,346 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-208ENST00000519895 DENND2AQ9ULE3 1009 aa3.49□□□□□ -1.85
MCF2-208ENST00000519895 GJA3Q9Y6H8 435 aa3.49□□□□□ -1.85
MCF2-208ENST00000519895 PPP1R37O75864 691 aa3.49□□□□□ -1.85
MCF2-208ENST00000519895 IFIT1P09914 478 aaKnown RBP3.49□□□□□ -1.85
MCF2-208ENST00000519895 SLC5A1P13866 664 aa3.49□□□□□ -1.85
MCF2-208ENST00000519895 CAMK2BQ13554 666 aa3.49□□□□□ -1.85
MCF2-208ENST00000519895 LRRFIP1Q32MZ4 808 aaKnown RBP3.49□□□□□ -1.85
MCF2-208ENST00000519895 LDLRAD1Q5T700 205 aa3.49□□□□□ -1.85
MCF2-208ENST00000519895 DPP8Q6V1X1 898 aaPredicted RBP3.49□□□□□ -1.85
MCF2-208ENST00000519895 ATG9AQ7Z3C6 839 aa3.49□□□□□ -1.85
MCF2-208ENST00000519895 TEX2Q8IWB9 1127 aa3.49□□□□□ -1.85
MCF2-208ENST00000519895 CDCA7LQ96GN5 454 aa3.49□□□□□ -1.85
MCF2-208ENST00000519895 DCTPP1Q9H773 170 aa3.49□□□□□ -1.85
MCF2-208ENST00000519895 RXFP3Q9NSD7 469 aa3.49□□□□□ -1.85
MCF2-208ENST00000519895 OGDHLQ9ULD0 1010 aa3.49□□□□□ -1.85
MCF2-208ENST00000519895 TNKSO95271 1327 aa3.48□□□□□ -1.85
MCF2-208ENST00000519895 PRUNE2Q8WUY3 3088 aa3.48□□□□□ -1.85
MCF2-208ENST00000519895 MUC3AQ02505 3323 aa3.48□□□□□ -1.85
MCF2-208ENST00000519895 A0A1B0GUL7 405 aa3.48□□□□□ -1.85
MCF2-208ENST00000519895 H7C1D1 291 aa3.48□□□□□ -1.85
MCF2-208ENST00000519895 J3QKU1 62 aa3.48□□□□□ -1.85
MCF2-208ENST00000519895 WDHD1O75717 1129 aaPredicted RBP3.48□□□□□ -1.85
MCF2-208ENST00000519895 SASH1O94885 1247 aa3.48□□□□□ -1.85
MCF2-208ENST00000519895 PPP4CP60510 307 aa3.48□□□□□ -1.85
MCF2-208ENST00000519895 LMNB2Q03252 620 aa3.48□□□□□ -1.85
MCF2-208ENST00000519895 CEP85Q6P2H3 762 aa3.48□□□□□ -1.85
MCF2-208ENST00000519895 RSBN1LQ6PCB5 846 aaPredicted RBP3.48□□□□□ -1.85
MCF2-208ENST00000519895 METTL16Q86W50 562 aaKnown RBP3.48□□□□□ -1.85
MCF2-208ENST00000519895 PLXNA1Q9UIW2 1896 aa3.48□□□□□ -1.85
MCF2-208ENST00000519895 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP3.48□□□□□ -1.85
MCF2-208ENST00000519895 USP17L3A6NCW0 530 aa3.48□□□□□ -1.85
MCF2-208ENST00000519895 USP17L4A6NCW7 530 aa3.48□□□□□ -1.85
MCF2-208ENST00000519895 SRRM3A6NNA2 597 aaPredicted RBP3.48□□□□□ -1.85
MCF2-208ENST00000519895 TBC1D12O60347 775 aa3.48□□□□□ -1.85
MCF2-208ENST00000519895 MLLT3P42568 568 aaPredicted RBP3.48□□□□□ -1.85
MCF2-208ENST00000519895 GSTO1P78417 241 aa3.48□□□□□ -1.85
MCF2-208ENST00000519895 GPSM2P81274 684 aa3.48□□□□□ -1.85
MCF2-208ENST00000519895 LACTBP83111 547 aaPredicted RBP3.48□□□□□ -1.85
MCF2-208ENST00000519895 CAP1Q01518 475 aa3.48□□□□□ -1.85
MCF2-208ENST00000519895 TTF1Q15361 905 aaPredicted RBP3.48□□□□□ -1.85
MCF2-208ENST00000519895 EML3Q32P44 896 aa3.48□□□□□ -1.85
MCF2-208ENST00000519895 GIMAP6Q6P9H5 292 aa3.48□□□□□ -1.85
MCF2-208ENST00000519895 USP17L1Q7RTZ2 530 aa3.48□□□□□ -1.85
MCF2-208ENST00000519895 UBE3BQ7Z3V4 1068 aa3.48□□□□□ -1.85
MCF2-208ENST00000519895 FAM83AQ86UY5 434 aa3.48□□□□□ -1.85
MCF2-208ENST00000519895 PBXIP1Q96AQ6 731 aa3.48□□□□□ -1.85
MCF2-208ENST00000519895 KIF1BPQ96EK5 621 aa3.48□□□□□ -1.85
MCF2-208ENST00000519895 POP1Q99575 1024 aaKnown RBP3.48□□□□□ -1.85
MCF2-208ENST00000519895 LSM14BQ9BX40 385 aaKnown RBP3.48□□□□□ -1.85
MCF2-208ENST00000519895 BICC1Q9H694 974 aaKnown RBP3.48□□□□□ -1.85
MCF2-208ENST00000519895 SNRKQ9NRH2 765 aa3.48□□□□□ -1.85
MCF2-208ENST00000519895 MAFO75444 373 aaPredicted RBP3.47□□□□□ -1.85
MCF2-208ENST00000519895 LMNAP02545 664 aaKnown RBP3.47□□□□□ -1.85
MCF2-208ENST00000519895 CHRNDQ07001 517 aa3.47□□□□□ -1.85
MCF2-208ENST00000519895 LMBR1LQ6UX01 489 aa3.47□□□□□ -1.85
MCF2-208ENST00000519895 APOBEC3FQ8IUX4 373 aaKnown RBP3.47□□□□□ -1.85
MCF2-208ENST00000519895 GPIHBP1Q8IV16 184 aa3.47□□□□□ -1.85
MCF2-208ENST00000519895 SMC5Q8IY18 1101 aa3.47□□□□□ -1.85
MCF2-208ENST00000519895 FAM89AQ96GI7 184 aa3.47□□□□□ -1.85
MCF2-208ENST00000519895 MPHOSPH8Q99549 860 aa3.47□□□□□ -1.85
MCF2-208ENST00000519895 GREM2Q9H772 168 aa3.47□□□□□ -1.85
MCF2-208ENST00000519895 ZNF277Q9NRM2 450 aaPredicted RBP3.47□□□□□ -1.85
MCF2-208ENST00000519895 SCN9AQ15858 1988 aa3.47□□□□□ -1.85
MCF2-208ENST00000519895 SALL3Q9BXA9 1300 aa3.47□□□□□ -1.85
MCF2-208ENST00000519895 IGF2BP3O00425 579 aaKnown RBP eCLIP3.47□□□□□ -1.85
MCF2-208ENST00000519895 ENTPD3O75355 529 aa3.47□□□□□ -1.85
MCF2-208ENST00000519895 LDHCP07864 332 aa3.47□□□□□ -1.85
MCF2-208ENST00000519895 AIMP1Q12904 312 aaKnown RBP3.47□□□□□ -1.85
MCF2-208ENST00000519895 CNGB1Q14028 1251 aaPredicted RBP3.47□□□□□ -1.85
MCF2-208ENST00000519895 EPHA10Q5JZY3 1008 aa3.47□□□□□ -1.85
MCF2-208ENST00000519895 PPP4R3BQ5MIZ7 849 aa3.47□□□□□ -1.85
MCF2-208ENST00000519895 DACT2Q5SW24 774 aa3.47□□□□□ -1.85
MCF2-208ENST00000519895 NOL9Q5SY16 702 aaKnown RBP3.47□□□□□ -1.85
MCF2-208ENST00000519895 C3orf67Q6ZVT6 689 aa3.47□□□□□ -1.85
MCF2-208ENST00000519895 SULF1Q8IWU6 871 aa3.47□□□□□ -1.85
MCF2-208ENST00000519895 FTSJ3Q8IY81 847 aaKnown RBP3.47□□□□□ -1.85
MCF2-208ENST00000519895 TMEM57Q8N5G2 664 aa3.47□□□□□ -1.85
MCF2-208ENST00000519895 PPM1EQ8WY54 764 aa3.47□□□□□ -1.85
MCF2-208ENST00000519895 CELF1Q92879 486 aaKnown RBP3.47□□□□□ -1.85
MCF2-208ENST00000519895 POM121Q96HA1 1249 aa3.47□□□□□ -1.85
MCF2-208ENST00000519895 IDI2Q9BXS1 227 aa3.47□□□□□ -1.85
MCF2-208ENST00000519895 UNC93B1Q9H1C4 597 aa3.47□□□□□ -1.85
MCF2-208ENST00000519895 CEP126Q9P2H0 1117 aa3.47□□□□□ -1.85
MCF2-208ENST00000519895 GREB1LQ9C091 1923 aaPredicted RBP3.47□□□□□ -1.85
MCF2-208ENST00000519895 LAMA4Q16363 1823 aa3.47□□□□□ -1.85
MCF2-208ENST00000519895 FAM221BA6H8Z2 402 aa3.47□□□□□ -1.85
MCF2-208ENST00000519895 ZFYP08048 801 aaPredicted RBP3.47□□□□□ -1.85
MCF2-208ENST00000519895 PCP11498 1178 aaKnown RBP3.47□□□□□ -1.85
MCF2-208ENST00000519895 AMHR2Q16671 573 aa3.47□□□□□ -1.85
MCF2-208ENST00000519895 WASHC4Q2M389 1173 aa3.47□□□□□ -1.85
MCF2-208ENST00000519895 CWF19L2Q2TBE0 894 aaKnown RBP3.47□□□□□ -1.85
MCF2-208ENST00000519895 CAVIN4Q5BKX8 364 aa3.47□□□□□ -1.85
MCF2-208ENST00000519895 UNQ6494/PRO21346Q6UXR6 183 aa3.47□□□□□ -1.85
MCF2-208ENST00000519895 PDZD3Q86UT5 571 aa3.47□□□□□ -1.85
MCF2-208ENST00000519895 ZNF622Q969S3 477 aaKnown RBP eCLIP3.47□□□□□ -1.85
MCF2-208ENST00000519895 FAM212AQ96EL1 285 aa3.47□□□□□ -1.85
MCF2-208ENST00000519895 ZDHHC15Q96MV8 337 aa3.47□□□□□ -1.85
MCF2-208ENST00000519895 MFRPQ9BY79 579 aa3.47□□□□□ -1.85
MCF2-208ENST00000519895 ZC3H12CQ9C0D7 883 aaKnown RBP3.47□□□□□ -1.85
MCF2-208ENST00000519895 CD209Q9NNX6 404 aa3.47□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms