RNA–Protein interactions for RNA: ENST00000449372.6

SYNGAP1-204, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 3,930 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-204ENST00000449372 DDR1Q08345 913 aa15.24■□□□□ 0.03
SYNGAP1-204ENST00000449372 RTEL1Q9NZ71 1219 aa15.24■□□□□ 0.03
SYNGAP1-204ENST00000449372 PUF60Q9UHX1 559 aaKnown RBP15.24■□□□□ 0.03
SYNGAP1-204ENST00000449372 RAB21Q9UL25 225 aa15.24■□□□□ 0.03
SYNGAP1-204ENST00000449372 CAPN7Q9Y6W3 813 aa15.24■□□□□ 0.03
SYNGAP1-204ENST00000449372 A0A0G2JLW4 131 aa15.24■□□□□ 0.03
SYNGAP1-204ENST00000449372 IMMTQ16891 758 aaKnown RBP15.24■□□□□ 0.03
SYNGAP1-204ENST00000449372 LDHAL6AQ6ZMR3 332 aa15.24■□□□□ 0.03
SYNGAP1-204ENST00000449372 SRGAP1Q7Z6B7 1085 aa15.24■□□□□ 0.03
SYNGAP1-204ENST00000449372 PDE8BO95263 885 aa15.24■□□□□ 0.03
SYNGAP1-204ENST00000449372 MCAMP43121 646 aa15.24■□□□□ 0.03
SYNGAP1-204ENST00000449372 TRIM6Q9C030 488 aaPredicted RBP15.24■□□□□ 0.03
SYNGAP1-204ENST00000449372 CD248Q9HCU0 757 aa15.24■□□□□ 0.03
SYNGAP1-204ENST00000449372 ODF2LQ9ULJ1 636 aa15.24■□□□□ 0.03
SYNGAP1-204ENST00000449372 JAK2O60674 1132 aa15.23■□□□□ 0.03
SYNGAP1-204ENST00000449372 INHBEP58166 350 aa15.23■□□□□ 0.03
SYNGAP1-204ENST00000449372 EXOSC10Q01780 885 aaKnown RBP15.23■□□□□ 0.03
SYNGAP1-204ENST00000449372 CCDC12Q8WUD4 166 aaPredicted RBP15.23■□□□□ 0.03
SYNGAP1-204ENST00000449372 CHUKO15111 745 aa15.23■□□□□ 0.03
SYNGAP1-204ENST00000449372 PIP4K2BP78356 416 aa15.23■□□□□ 0.03
SYNGAP1-204ENST00000449372 ZKSCAN4Q969J2 545 aaPredicted RBP15.23■□□□□ 0.03
SYNGAP1-204ENST00000449372 MPHOSPH10O00566 681 aaKnown RBP15.23■□□□□ 0.03
SYNGAP1-204ENST00000449372 SERPINC1P01008 464 aa15.23■□□□□ 0.03
SYNGAP1-204ENST00000449372 ARID4AP29374 1257 aaPredicted RBP15.23■□□□□ 0.03
SYNGAP1-204ENST00000449372 ZAP70P43403 619 aa15.23■□□□□ 0.03
SYNGAP1-204ENST00000449372 NLRP12P59046 1061 aa15.23■□□□□ 0.03
SYNGAP1-204ENST00000449372 NSUN7Q8NE18 718 aaKnown RBP15.22■□□□□ 0.03
SYNGAP1-204ENST00000449372 KIFC2Q96AC6 838 aa15.22■□□□□ 0.03
SYNGAP1-204ENST00000449372 KIAA1468Q9P260 1216 aa15.22■□□□□ 0.03
SYNGAP1-204ENST00000449372 IKBKBO14920 756 aa15.22■□□□□ 0.03
SYNGAP1-204ENST00000449372 SPTLC2O15270 562 aa15.22■□□□□ 0.03
SYNGAP1-204ENST00000449372 TTC39AQ5SRH9 613 aa15.22■□□□□ 0.03
SYNGAP1-204ENST00000449372 PI16Q6UXB8 463 aa15.22■□□□□ 0.03
SYNGAP1-204ENST00000449372 SMARCC1Q92922 1105 aaPredicted RBP15.22■□□□□ 0.03
SYNGAP1-204ENST00000449372 MYH15Q9Y2K3 1946 aa15.22■□□□□ 0.03
SYNGAP1-204ENST00000449372 NBPF9Q3BBW0 867 aa15.22■□□□□ 0.03
SYNGAP1-204ENST00000449372 METTL24Q5JXM2 366 aa15.22■□□□□ 0.03
SYNGAP1-204ENST00000449372 FBXL16Q8N461 479 aa15.22■□□□□ 0.03
SYNGAP1-204ENST00000449372 LINC00116Q8NCU8 138 aa15.22■□□□□ 0.03
SYNGAP1-204ENST00000449372 GBP3Q9H0R5 595 aa15.22■□□□□ 0.03
SYNGAP1-204ENST00000449372 MSANTD4Q8NCY6 345 aa15.21■□□□□ 0.03
SYNGAP1-204ENST00000449372 MYO1FO00160 1098 aa15.21■□□□□ 0.03
SYNGAP1-204ENST00000449372 CUTAO60888 179 aa15.21■□□□□ 0.03
SYNGAP1-204ENST00000449372 RHOXF2BP0C7M4 288 aa15.21■□□□□ 0.03
SYNGAP1-204ENST00000449372 GOLGA8FQ08AF8 430 aa15.21■□□□□ 0.03
SYNGAP1-204ENST00000449372 GOLGA8DPQ0D2H9 430 aa15.21■□□□□ 0.03
SYNGAP1-204ENST00000449372 PARP10Q53GL7 1025 aa15.21■□□□□ 0.03
SYNGAP1-204ENST00000449372 RHOXF2Q9BQY4 288 aa15.21■□□□□ 0.03
SYNGAP1-204ENST00000449372 GOLPH3LQ9H4A5 285 aa15.21■□□□□ 0.03
SYNGAP1-204ENST00000449372 MROH5Q6ZUA9 1318 aa15.21■□□□□ 0.02
SYNGAP1-204ENST00000449372 LRRIQ3A6PVS8 624 aaPredicted RBP15.21■□□□□ 0.02
SYNGAP1-204ENST00000449372 ARHGAP6O43182 974 aa15.21■□□□□ 0.02
SYNGAP1-204ENST00000449372 IBSPP21815 317 aaPredicted RBP15.21■□□□□ 0.02
SYNGAP1-204ENST00000449372 CRYMQ14894 314 aa15.21■□□□□ 0.02
SYNGAP1-204ENST00000449372 RGL2O15211 777 aa15.2■□□□□ 0.02
SYNGAP1-204ENST00000449372 ZKSCAN8Q15776 578 aaPredicted RBP15.2■□□□□ 0.02
SYNGAP1-204ENST00000449372 FAM98CQ17RN3 349 aaKnown RBP15.2■□□□□ 0.02
SYNGAP1-204ENST00000449372 PTF1AQ7RTS3 328 aa15.2■□□□□ 0.02
SYNGAP1-204ENST00000449372 POLR3EQ9NVU0 708 aa15.2■□□□□ 0.02
SYNGAP1-204ENST00000449372 TAF1P21675 1872 aa15.2■□□□□ 0.02
SYNGAP1-204ENST00000449372 TOP1P11387 765 aaKnown RBP15.2■□□□□ 0.02
SYNGAP1-204ENST00000449372 VSNL1P62760 191 aa15.2■□□□□ 0.02
SYNGAP1-204ENST00000449372 PREPLQ4J6C6 727 aaPredicted RBP15.2■□□□□ 0.02
SYNGAP1-204ENST00000449372 USP28Q96RU2 1077 aa15.2■□□□□ 0.02
SYNGAP1-204ENST00000449372 ATP2B2Q01814 1243 aa15.2■□□□□ 0.02
SYNGAP1-204ENST00000449372 FKBP4Q02790 459 aaKnown RBP eCLIP15.2■□□□□ 0.02
SYNGAP1-204ENST00000449372 SAFBQ15424 915 aaKnown RBP eCLIP15.2■□□□□ 0.02
SYNGAP1-204ENST00000449372 DPCR1Q3MIW9 517 aa15.2■□□□□ 0.02
SYNGAP1-204ENST00000449372 CEP112Q8N8E3 955 aa15.2■□□□□ 0.02
SYNGAP1-204ENST00000449372 PUS7LQ9H0K6 701 aaKnown RBP15.2■□□□□ 0.02
SYNGAP1-204ENST00000449372 BSDC1Q9NW68 430 aaPredicted RBP15.2■□□□□ 0.02
SYNGAP1-204ENST00000449372 LMOD1P29536 600 aaPredicted RBP15.19■□□□□ 0.02
SYNGAP1-204ENST00000449372 FANCCQ00597 558 aa15.19■□□□□ 0.02
SYNGAP1-204ENST00000449372 WASF1Q92558 559 aa15.19■□□□□ 0.02
SYNGAP1-204ENST00000449372 CNTNAP4Q9C0A0 1308 aa15.19■□□□□ 0.02
SYNGAP1-204ENST00000449372 C4AP0C0L4 1744 aa15.19■□□□□ 0.02
SYNGAP1-204ENST00000449372 C4BP0C0L5 1744 aa15.19■□□□□ 0.02
SYNGAP1-204ENST00000449372 TBC1D8BQ0IIM8 1120 aa15.19■□□□□ 0.02
SYNGAP1-204ENST00000449372 TUBB2AQ13885 445 aa15.19■□□□□ 0.02
SYNGAP1-204ENST00000449372 IQCA1Q86XH1 822 aa15.19■□□□□ 0.02
SYNGAP1-204ENST00000449372 IGSF22Q8N9C0 903 aa15.19■□□□□ 0.02
SYNGAP1-204ENST00000449372 TUBB2BQ9BVA1 445 aa15.19■□□□□ 0.02
SYNGAP1-204ENST00000449372 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.19■□□□□ 0.028e-7■■■■□ 22
SYNGAP1-204ENST00000449372 TCRBV5S4A2TA0A5A2 114 aa15.19■□□□□ 0.02
SYNGAP1-204ENST00000449372 SHTN1A0MZ66 631 aa15.19■□□□□ 0.02
SYNGAP1-204ENST00000449372 E7EWF7 191 aa15.19■□□□□ 0.02
SYNGAP1-204ENST00000449372 FOSBP53539 338 aa15.19■□□□□ 0.02
SYNGAP1-204ENST00000449372 CLEC4GQ6UXB4 293 aa15.19■□□□□ 0.02
SYNGAP1-204ENST00000449372 BCAS4Q8TDM0 211 aa15.19■□□□□ 0.02
SYNGAP1-204ENST00000449372 APPBP2Q92624 585 aa15.19■□□□□ 0.02
SYNGAP1-204ENST00000449372 RABEP2Q9H5N1 569 aa15.19■□□□□ 0.02
SYNGAP1-204ENST00000449372 SYF2O95926 243 aaKnown RBP15.18■□□□□ 0.02
SYNGAP1-204ENST00000449372 CCDC102BQ68D86 513 aa15.18■□□□□ 0.02
SYNGAP1-204ENST00000449372 CNNM1Q9NRU3 951 aa15.18■□□□□ 0.02
SYNGAP1-204ENST00000449372 ADD2P35612 726 aa15.18■□□□□ 0.02
SYNGAP1-204ENST00000449372 MYL5Q02045 173 aa15.18■□□□□ 0.02
SYNGAP1-204ENST00000449372 CFAP100Q494V2 611 aa15.18■□□□□ 0.02
SYNGAP1-204ENST00000449372 AP1ARQ63HQ0 302 aa15.18■□□□□ 0.02
SYNGAP1-204ENST00000449372 SEC31BQ9NQW1 1179 aa15.18■□□□□ 0.02
SYNGAP1-204ENST00000449372 PRPF6O94906 941 aaKnown RBP15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms