RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 GPR152Q8TDT2 470 aa3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 N4BP2L2Q92802 583 aaPredicted RBP3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 OPTNQ96CV9 577 aa3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 TGS1Q96RS0 853 aaKnown RBP3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 ANKRD2Q9GZV1 360 aa3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 INCENPQ9NQS7 918 aa3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 SPHK2Q9NRA0 654 aa3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 SEPT10Q9P0V9 454 aa3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 MRVI1Q9Y6F6 885 aa3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 ERBINQ96RT1 1412 aa3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 SETBP1Q9Y6X0 1596 aa3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 KRT37O76014 449 aa3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 LY6DQ14210 128 aa3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 LRRFIP1Q32MZ4 808 aaKnown RBP3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 SYCP2LQ5T4T6 812 aa3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 GPR153Q6NV75 609 aa3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 CPXCR1Q8N123 301 aa3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 GOLGA6L2Q8N9W4 650 aaPredicted RBP3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 ARHGEF1Q92888 912 aaKnown RBP3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 CSRNP1Q96S65 589 aa3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 BRD9Q9H8M2 597 aa3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 PRDM16Q9HAZ2 1276 aa3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 RTEL1Q9NZ71 1219 aa3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 LRP2BPQ9P2M1 347 aa3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 FAM184BQ9ULE4 1060 aa3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 TELO2Q9Y4R8 837 aa3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 DCAF1Q9Y4B6 1507 aa3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 RNF17Q9BXT8 1623 aaKnown RBP3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 AKAP6Q13023 2319 aa3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 TMEM8BA6NDV4 472 aa3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 RIOK3O14730 519 aaKnown RBP3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 NKRFO15226 690 aaKnown RBP eCLIP3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 SYPP08247 313 aa3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 ACRP10323 421 aa3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 RAB3GAP1Q15042 981 aa3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 PPP1R26Q5T8A7 1209 aaPredicted RBP3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 SMIM5Q71RC9 77 aa3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 NT5DC4Q86YG4 428 aa3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 PPARGC1BQ86YN6 1023 aaKnown RBP3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 MAGEB6Q8N7X4 407 aa3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 RSAD2Q8WXG1 361 aa3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 PIGKQ92643 395 aa3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 NECTIN2Q92692 538 aa3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 TEKT1Q969V4 418 aa3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 NELL2Q99435 816 aa3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 GPRC5DQ9NZD1 345 aa3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 ZNF70Q9UC06 446 aaPredicted RBP3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 ARHGAP35Q9NRY4 1499 aa3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 KCPQ6ZWJ8 1503 aa3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 COL6A6A6NMZ7 2263 aa3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 F6X3S4 739 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 ZBTB48P10074 688 aaPredicted RBP3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 MTHFRP42898 656 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 ARL4DP49703 201 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 ZNF200P98182 395 aaPredicted RBP3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 TEAD4Q15561 434 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 PARP10Q53GL7 1025 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 ZNF569Q5MCW4 686 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 PCNX4Q63HM2 1172 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 STYK1Q6J9G0 422 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 NSMFQ6X4W1 530 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 CYP2U1Q7Z449 544 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 FRMD5Q7Z6J6 570 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 HOOK3Q86VS8 718 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 RASSF8Q8NHQ8 419 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 AFG1LQ8WV93 481 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 HAPLN3Q96S86 360 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 SLC12A9Q9BXP2 914 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 PCGF6Q9BYE7 350 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 EPHX3Q9H6B9 360 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 KLHL3Q9UH77 587 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 R4GN57 208 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 TOP2AP11388 1531 aaKnown RBP3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 GON4LQ3T8J9 2241 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 ABCA8O94911 1581 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 PLCH2O75038 1416 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 H0Y626 953 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 PDHXO00330 501 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 SORBS3O60504 671 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 USP2O75604 605 aaPredicted RBP3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 NEBLO76041 1014 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 TRIM16O95361 564 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 ITGAVP06756 1048 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 HSP90AA1P07900 732 aaKnown RBP3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 SLC5A1P13866 664 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 LIG1P18858 919 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 RGS19P49795 217 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 ZXDCQ2QGD7 858 aaPredicted RBP3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 KLHL22Q53GT1 634 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 AKNAD1Q5T1N1 836 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 LLGL2Q6P1M3 1020 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 APBB1IPQ7Z5R6 666 aaPredicted RBP3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 PLEKHH3Q7Z736 793 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 TP53INP2Q8IXH6 220 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 IFNL3Q8IZI9 196 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 ZGPATQ8N5A5 531 aaKnown RBP3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 NECTIN4Q96NY8 510 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 ARHGEF10LQ9HCE6 1279 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 PARP2Q9UGN5 583 aa3.23□□□□□ -1.89
CCDC88A-205ENST00000426576 TTF2Q9UNY4 1162 aaKnown RBP3.23□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms