RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 FAM110CQ1W6H9 321 aa9.35□□□□□ -0.91
LIMS1-203ENST00000393310 CT47A1Q5JQC4 288 aaPredicted RBP9.35□□□□□ -0.91
LIMS1-203ENST00000393310 ABI1Q8IZP0 508 aa9.35□□□□□ -0.91
LIMS1-203ENST00000393310 COL1A1P02452 1464 aaPredicted RBP9.35□□□□□ -0.91
LIMS1-203ENST00000393310 FAM208AQ9UK61 1670 aaKnown RBP9.34□□□□□ -0.91
LIMS1-203ENST00000393310 EYA2O00167 538 aa9.34□□□□□ -0.91
LIMS1-203ENST00000393310 NOP56O00567 594 aaKnown RBP9.34□□□□□ -0.91
LIMS1-203ENST00000393310 MFSD4BQ5TF39 518 aa9.34□□□□□ -0.91
LIMS1-203ENST00000393310 TDHQ8IZJ6 230 aa9.34□□□□□ -0.91
LIMS1-203ENST00000393310 SLC44A5Q8NCS7 719 aa9.34□□□□□ -0.91
LIMS1-203ENST00000393310 SPINK5Q9NQ38 1064 aaPredicted RBP9.34□□□□□ -0.91
LIMS1-203ENST00000393310 KCNG1Q9UIX4 513 aa9.34□□□□□ -0.91
LIMS1-203ENST00000393310 KIAA1210Q9ULL0 1709 aa9.34□□□□□ -0.91
LIMS1-203ENST00000393310 AKAP12Q02952 1782 aa9.34□□□□□ -0.91
LIMS1-203ENST00000393310 RALYLQ86SE5 291 aaKnown RBP9.34□□□□□ -0.91
LIMS1-203ENST00000393310 MMP19Q99542 508 aa9.34□□□□□ -0.91
LIMS1-203ENST00000393310 SLC45A1Q9Y2W3 748 aa9.34□□□□□ -0.91
LIMS1-203ENST00000393310 SLC15A5A6NIM6 579 aa9.34□□□□□ -0.91
LIMS1-203ENST00000393310 CHRM1P11229 460 aaPredicted RBP9.34□□□□□ -0.91
LIMS1-203ENST00000393310 FPGSQ05932 587 aa9.34□□□□□ -0.91
LIMS1-203ENST00000393310 SEMA3FQ13275 785 aa9.34□□□□□ -0.91
LIMS1-203ENST00000393310 MIGA2Q7L4E1 593 aa9.34□□□□□ -0.91
LIMS1-203ENST00000393310 DRC1Q96MC2 740 aa9.34□□□□□ -0.91
LIMS1-203ENST00000393310 MFSD14AQ96MC6 490 aa9.34□□□□□ -0.91
LIMS1-203ENST00000393310 KATNAL1Q9BW62 490 aa9.34□□□□□ -0.91
LIMS1-203ENST00000393310 ADGRB1O14514 1584 aa9.34□□□□□ -0.92
LIMS1-203ENST00000393310 SDHBP21912 280 aa9.33□□□□□ -0.92
LIMS1-203ENST00000393310 CASQ1P31415 396 aa9.33□□□□□ -0.92
LIMS1-203ENST00000393310 AP1ARQ63HQ0 302 aa9.33□□□□□ -0.92
LIMS1-203ENST00000393310 OTUD6BQ8N6M0 293 aa9.33□□□□□ -0.92
LIMS1-203ENST00000393310 ARMC5Q96C12 935 aa9.33□□□□□ -0.92
LIMS1-203ENST00000393310 CALR3Q96L12 384 aaKnown RBP9.33□□□□□ -0.92
LIMS1-203ENST00000393310 NOP2P46087 812 aaKnown RBP9.33□□□□□ -0.92
LIMS1-203ENST00000393310 MRPS5P82675 430 aaKnown RBP9.33□□□□□ -0.92
LIMS1-203ENST00000393310 PALM3A6NDB9 673 aaPredicted RBP9.33□□□□□ -0.92
LIMS1-203ENST00000393310 SRGAP3O43295 1099 aa9.33□□□□□ -0.92
LIMS1-203ENST00000393310 ZNF76P36508 570 aa9.33□□□□□ -0.92
LIMS1-203ENST00000393310 RGS19P49795 217 aa9.33□□□□□ -0.92
LIMS1-203ENST00000393310 PDE4DQ08499 809 aa9.33□□□□□ -0.92
LIMS1-203ENST00000393310 ZKSCAN2Q63HK3 967 aa9.33□□□□□ -0.92
LIMS1-203ENST00000393310 SEPT14Q6ZU15 432 aa9.33□□□□□ -0.92
LIMS1-203ENST00000393310 ANKRD13CQ8N6S4 541 aa9.33□□□□□ -0.92
LIMS1-203ENST00000393310 ZNHIT6Q9NWK9 470 aaKnown RBP9.33□□□□□ -0.92
LIMS1-203ENST00000393310 COG5Q9UP83 839 aa9.33□□□□□ -0.92
LIMS1-203ENST00000393310 RWDD3Q9Y3V2 267 aa9.33□□□□□ -0.92
LIMS1-203ENST00000393310 GNAT2P19087 354 aa9.33□□□□□ -0.92
LIMS1-203ENST00000393310 ISCA1Q9BUE6 129 aa9.33□□□□□ -0.92
LIMS1-203ENST00000393310 POTEIP0CG38 1075 aa9.32□□□□□ -0.92
LIMS1-203ENST00000393310 POTEJP0CG39 1038 aa9.32□□□□□ -0.92
LIMS1-203ENST00000393310 DMWDQ09019 674 aa9.32□□□□□ -0.92
LIMS1-203ENST00000393310 GEMIN8Q9NWZ8 242 aaKnown RBP9.32□□□□□ -0.92
LIMS1-203ENST00000393310 GOLGA6L10A6NI86 522 aa9.32□□□□□ -0.92
LIMS1-203ENST00000393310 FGBP02675 491 aa9.32□□□□□ -0.92
LIMS1-203ENST00000393310 BTDP43251 543 aa9.32□□□□□ -0.92
LIMS1-203ENST00000393310 BIRC2Q13490 618 aa9.32□□□□□ -0.92
LIMS1-203ENST00000393310 TJAP1Q5JTD0 557 aa9.32□□□□□ -0.92
LIMS1-203ENST00000393310 MORC4Q8TE76 937 aa9.32□□□□□ -0.92
LIMS1-203ENST00000393310 SH3TC2Q8TF17 1288 aa9.32□□□□□ -0.92
LIMS1-203ENST00000393310 METTL14Q9HCE5 456 aaKnown RBP9.32□□□□□ -0.92
LIMS1-203ENST00000393310 MAGEB6P1A0A0J9YX57 407 aa9.32□□□□□ -0.92
LIMS1-203ENST00000393310 HIP1O00291 1037 aa9.32□□□□□ -0.92
LIMS1-203ENST00000393310 CLCN1P35523 988 aa9.32□□□□□ -0.92
LIMS1-203ENST00000393310 GNPTABQ3T906 1256 aa9.32□□□□□ -0.92
LIMS1-203ENST00000393310 SPDYE2Q495Y8 402 aa9.32□□□□□ -0.92
LIMS1-203ENST00000393310 MAFAQ8NHW3 353 aaPredicted RBP9.32□□□□□ -0.92
LIMS1-203ENST00000393310 PAWRQ96IZ0 340 aaKnown RBP9.32□□□□□ -0.92
LIMS1-203ENST00000393310 NRXN3Q9Y4C0 1643 aa9.32□□□□□ -0.92
LIMS1-203ENST00000393310 H0YGN5 161 aa9.31□□□□□ -0.92
LIMS1-203ENST00000393310 AKR1A1P14550 325 aa9.31□□□□□ -0.92
LIMS1-203ENST00000393310 ZYXQ15942 572 aaKnown RBP9.31□□□□□ -0.92
LIMS1-203ENST00000393310 IQCA1Q86XH1 822 aa9.31□□□□□ -0.92
LIMS1-203ENST00000393310 DYDC1Q8WWB3 177 aa9.31□□□□□ -0.92
LIMS1-203ENST00000393310 AGTPBP1Q9UPW5 1226 aa9.31□□□□□ -0.92
LIMS1-203ENST00000393310 RTL9Q8NET4 1388 aa9.31□□□□□ -0.92
LIMS1-203ENST00000393310 TKFCQ3LXA3 575 aa9.31□□□□□ -0.92
LIMS1-203ENST00000393310 LCA5Q86VQ0 697 aa9.31□□□□□ -0.92
LIMS1-203ENST00000393310 CLUAP1Q96AJ1 413 aa9.31□□□□□ -0.92
LIMS1-203ENST00000393310 NRBP1Q9UHY1 535 aa9.31□□□□□ -0.92
LIMS1-203ENST00000393310 NBPF26B4DH59 902 aa9.31□□□□□ -0.92
LIMS1-203ENST00000393310 USP17L12C9JPN9 530 aa9.31□□□□□ -0.92
LIMS1-203ENST00000393310 USP17L21D6R901 530 aa9.31□□□□□ -0.92
LIMS1-203ENST00000393310 TAF5LO75529 589 aa9.31□□□□□ -0.92
LIMS1-203ENST00000393310 PFKMP08237 780 aa9.31□□□□□ -0.92
LIMS1-203ENST00000393310 CCDC172P0C7W6 258 aa9.31□□□□□ -0.92
LIMS1-203ENST00000393310 PRKAR2AP13861 404 aaKnown RBP9.31□□□□□ -0.92
LIMS1-203ENST00000393310 NBPF12Q5TAG4 269 aaPredicted RBP9.31□□□□□ -0.92
LIMS1-203ENST00000393310 ZNF280DQ6N043 979 aa9.31□□□□□ -0.92
LIMS1-203ENST00000393310 CHAMP1Q96JM3 812 aa9.31□□□□□ -0.92
LIMS1-203ENST00000393310 MCM9Q9NXL9 1143 aa9.31□□□□□ -0.92
LIMS1-203ENST00000393310 LOC102724159A0A0B4J2E5 919 aa9.31□□□□□ -0.92
LIMS1-203ENST00000393310 COG2Q14746 738 aa9.31□□□□□ -0.92
LIMS1-203ENST00000393310 PWP2Q15269 919 aaKnown RBP9.31□□□□□ -0.92
LIMS1-203ENST00000393310 TMEM31Q5JXX7 168 aa9.31□□□□□ -0.92
LIMS1-203ENST00000393310 FAM160B2Q86V87 743 aa9.31□□□□□ -0.92
LIMS1-203ENST00000393310 MCF2L2Q86YR7 1114 aa9.31□□□□□ -0.92
LIMS1-203ENST00000393310 LPAR1Q92633 364 aa9.31□□□□□ -0.92
LIMS1-203ENST00000393310 SEC31BQ9NQW1 1179 aa9.31□□□□□ -0.92
LIMS1-203ENST00000393310 MROH7-TTC4A0A0A0MT08 1334 aa9.3□□□□□ -0.92
LIMS1-203ENST00000393310 C6orf222P0C671 652 aaPredicted RBP9.3□□□□□ -0.92
LIMS1-203ENST00000393310 RARSP54136 660 aaKnown RBP9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms