RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 TXNRD3Q86VQ6 643 aa24.82■■□□□ 1.56
TRIM54-202ENST00000380075 ZNF830Q96NB3 372 aaPredicted RBP24.82■■□□□ 1.56
TRIM54-202ENST00000380075 BPIFA3Q9BQP9 254 aa24.82■■□□□ 1.56
TRIM54-202ENST00000380075 SPTLC3Q9NUV7 552 aa24.82■■□□□ 1.56
TRIM54-202ENST00000380075 PPIP5K2O43314 1243 aa24.82■■□□□ 1.56
TRIM54-202ENST00000380075 ORC4O43929 436 aa24.82■■□□□ 1.56
TRIM54-202ENST00000380075 CUTAO60888 179 aa24.82■■□□□ 1.56
TRIM54-202ENST00000380075 NOLC1Q14978 699 aaKnown RBP eCLIP24.82■■□□□ 1.56
TRIM54-202ENST00000380075 CTR9Q6PD62 1173 aa24.82■■□□□ 1.56
TRIM54-202ENST00000380075 SPC24Q8NBT2 197 aa24.82■■□□□ 1.56
TRIM54-202ENST00000380075 RBM28Q9NW13 759 aaKnown RBP24.82■■□□□ 1.56
TRIM54-202ENST00000380075 HPSEQ9Y251 543 aa24.82■■□□□ 1.56
TRIM54-202ENST00000380075 IRS2Q9Y4H2 1338 aa24.81■■□□□ 1.56
TRIM54-202ENST00000380075 WDHD1O75717 1129 aaPredicted RBP24.81■■□□□ 1.56
TRIM54-202ENST00000380075 SLC3A2P08195 630 aaKnown RBP24.81■■□□□ 1.56
TRIM54-202ENST00000380075 LMNB1P20700 586 aa24.81■■□□□ 1.56
TRIM54-202ENST00000380075 EYA3Q99504 573 aa24.81■■□□□ 1.56
TRIM54-202ENST00000380075 ZC3H12CQ9C0D7 883 aaKnown RBP24.81■■□□□ 1.56
TRIM54-202ENST00000380075 XBP1P17861 261 aa24.8■■□□□ 1.56
TRIM54-202ENST00000380075 SBK1Q52WX2 424 aa24.8■■□□□ 1.56
TRIM54-202ENST00000380075 RILPL1Q5EBL4 403 aa24.8■■□□□ 1.56
TRIM54-202ENST00000380075 CATIPQ7Z7H3 387 aa24.8■■□□□ 1.56
TRIM54-202ENST00000380075 NUP133Q8WUM0 1156 aa24.8■■□□□ 1.56
TRIM54-202ENST00000380075 MRFAP1L1Q96HT8 127 aa24.8■■□□□ 1.56
TRIM54-202ENST00000380075 ARPP21Q9UBL0 812 aaPredicted RBP24.8■■□□□ 1.56
TRIM54-202ENST00000380075 SYKP43405 635 aa24.8■■□□□ 1.56
TRIM54-202ENST00000380075 IFIT1BQ5T764 474 aaKnown RBP24.8■■□□□ 1.56
TRIM54-202ENST00000380075 DIS3L2Q8IYB7 885 aaKnown RBP24.8■■□□□ 1.56
TRIM54-202ENST00000380075 LARGE2Q8N3Y3 721 aa24.8■■□□□ 1.56
TRIM54-202ENST00000380075 ENAHQ8N8S7 591 aaPredicted RBP24.8■■□□□ 1.56
TRIM54-202ENST00000380075 DDX52Q9Y2R4 599 aaKnown RBP eCLIP24.8■■□□□ 1.56
TRIM54-202ENST00000380075 DDAH1O94760 285 aa24.79■■□□□ 1.56
TRIM54-202ENST00000380075 MARCKSP29966 332 aaPredicted RBP24.79■■□□□ 1.56
TRIM54-202ENST00000380075 AKAP17AQ02040 695 aaKnown RBP24.79■■□□□ 1.56
TRIM54-202ENST00000380075 C9orf131Q5VYM1 1079 aa24.79■■□□□ 1.56
TRIM54-202ENST00000380075 RESP18Q5W5W9 173 aa24.79■■□□□ 1.56
TRIM54-202ENST00000380075 DHX40Q8IX18 779 aaKnown RBP24.79■■□□□ 1.56
TRIM54-202ENST00000380075 STK11IPQ8N1F8 1099 aa24.79■■□□□ 1.56
TRIM54-202ENST00000380075 GUCY1A2P33402 732 aa24.78■■□□□ 1.56
TRIM54-202ENST00000380075 DRC7Q8IY82 874 aa24.78■■□□□ 1.56
TRIM54-202ENST00000380075 KIAA1524Q8TCG1 905 aa24.78■■□□□ 1.56
TRIM54-202ENST00000380075 VPS33BQ9H267 617 aa24.78■■□□□ 1.56
TRIM54-202ENST00000380075 KCNF1Q9H3M0 494 aa24.78■■□□□ 1.56
TRIM54-202ENST00000380075 DCP1AQ9NPI6 582 aaPredicted RBP24.78■■□□□ 1.56
TRIM54-202ENST00000380075 RNF181Q9P0P0 153 aa24.78■■□□□ 1.56
TRIM54-202ENST00000380075 MORC2Q9Y6X9 1032 aaPredicted RBP24.78■■□□□ 1.56
TRIM54-202ENST00000380075 MROH7-TTC4A0A0A0MT08 1334 aa24.78■■□□□ 1.56
TRIM54-202ENST00000380075 USP17L12C9JPN9 530 aa24.78■■□□□ 1.56
TRIM54-202ENST00000380075 USP17L21D6R901 530 aa24.78■■□□□ 1.56
TRIM54-202ENST00000380075 ELOA2Q8IYF1 753 aaPredicted RBP24.78■■□□□ 1.56
TRIM54-202ENST00000380075 WDR66Q8TBY9 1149 aa24.78■■□□□ 1.56
TRIM54-202ENST00000380075 R3HCC1Q9Y3T6 440 aaKnown RBP24.78■■□□□ 1.56
TRIM54-202ENST00000380075 BTBD18B2RXH4 712 aa24.77■■□□□ 1.56
TRIM54-202ENST00000380075 NLRP12P59046 1061 aa24.77■■□□□ 1.56
TRIM54-202ENST00000380075 CHAF1AQ13111 956 aaPredicted RBP24.77■■□□□ 1.56
TRIM54-202ENST00000380075 DOK7Q18PE1 504 aa24.77■■□□□ 1.56
TRIM54-202ENST00000380075 LAMB1P07942 1786 aa24.77■■□□□ 1.56
TRIM54-202ENST00000380075 SHC4Q6S5L8 630 aa24.76■■□□□ 1.55
TRIM54-202ENST00000380075 C15orf52Q6ZUT6 534 aaKnown RBP24.76■■□□□ 1.55
TRIM54-202ENST00000380075 KRI1Q8N9T8 703 aaKnown RBP24.76■■□□□ 1.55
TRIM54-202ENST00000380075 AATFQ9NY61 560 aaKnown RBP eCLIP24.76■■□□□ 1.55
TRIM54-202ENST00000380075 CLIP2Q9UDT6 1046 aa24.76■■□□□ 1.55
TRIM54-202ENST00000380075 CEP131Q9UPN4 1083 aa24.76■■□□□ 1.55
TRIM54-202ENST00000380075 COL4A5P29400 1685 aa24.76■■□□□ 1.55
TRIM54-202ENST00000380075 CCDC88AQ3V6T2 1871 aa24.76■■□□□ 1.55
TRIM54-202ENST00000380075 PRPF3O43395 683 aaKnown RBP24.76■■□□□ 1.55
TRIM54-202ENST00000380075 PRDX5P30044 214 aa24.76■■□□□ 1.55
TRIM54-202ENST00000380075 DZIP1Q86YF9 867 aaKnown RBP24.76■■□□□ 1.55
TRIM54-202ENST00000380075 DBNDD1Q9H9R9 158 aa24.76■■□□□ 1.55
TRIM54-202ENST00000380075 UBE2Q2LH0YL09 131 aa24.75■■□□□ 1.55
TRIM54-202ENST00000380075 NOL10Q9BSC4 688 aaKnown RBP24.75■■□□□ 1.55
TRIM54-202ENST00000380075 PTGS1P23219 599 aa24.74■■□□□ 1.55
TRIM54-202ENST00000380075 PDE4BQ07343 736 aa24.74■■□□□ 1.55
TRIM54-202ENST00000380075 CCDC186Q7Z3E2 898 aa24.74■■□□□ 1.55
TRIM54-202ENST00000380075 JDP2Q8WYK2 163 aa24.74■■□□□ 1.55
TRIM54-202ENST00000380075 BAZ2AQ9UIF9 1905 aaKnown RBP24.74■■□□□ 1.55
TRIM54-202ENST00000380075 CYP2D7A0A087X1C5 515 aa24.74■■□□□ 1.55
TRIM54-202ENST00000380075 GSTO1P78417 241 aa24.74■■□□□ 1.55
TRIM54-202ENST00000380075 TROAPQ12815 778 aa24.74■■□□□ 1.55
TRIM54-202ENST00000380075 AOPEPQ8N6M6 819 aa24.74■■□□□ 1.55
TRIM54-202ENST00000380075 TUBE1Q9UJT0 475 aa24.74■■□□□ 1.55
TRIM54-202ENST00000380075 KCNJ14Q9UNX9 436 aa24.74■■□□□ 1.55
TRIM54-202ENST00000380075 TPM4P67936 248 aa24.73■■□□□ 1.55
TRIM54-202ENST00000380075 FUT2Q10981 343 aa24.73■■□□□ 1.55
TRIM54-202ENST00000380075 NIM1KQ8IY84 436 aa24.73■■□□□ 1.55
TRIM54-202ENST00000380075 ZNF579Q8NAF0 562 aaKnown RBP24.73■■□□□ 1.55
TRIM54-202ENST00000380075 G3V3G9 751 aa24.73■■□□□ 1.55
TRIM54-202ENST00000380075 NEMFO60524 1076 aa24.73■■□□□ 1.55
TRIM54-202ENST00000380075 DCAF8Q5TAQ9 597 aa24.73■■□□□ 1.55
TRIM54-202ENST00000380075 ZNF804AQ7Z570 1209 aa24.73■■□□□ 1.55
TRIM54-202ENST00000380075 CERS3Q8IU89 383 aa24.73■■□□□ 1.55
TRIM54-202ENST00000380075 HOOK1Q9UJC3 728 aaKnown RBP24.73■■□□□ 1.55
TRIM54-202ENST00000380075 SBF1O95248 1867 aa24.72■■□□□ 1.55
TRIM54-202ENST00000380075 SMTNL1A8MU46 457 aa24.72■■□□□ 1.55
TRIM54-202ENST00000380075 ECE2O60344 883 aa24.72■■□□□ 1.55
TRIM54-202ENST00000380075 PTPREP23469 700 aa24.72■■□□□ 1.55
TRIM54-202ENST00000380075 TOB1P50616 345 aaPredicted RBP24.72■■□□□ 1.55
TRIM54-202ENST00000380075 DPCR1Q3MIW9 517 aa24.72■■□□□ 1.55
TRIM54-202ENST00000380075 DNTTIP2Q5QJE6 756 aaKnown RBP24.72■■□□□ 1.55
TRIM54-202ENST00000380075 CCDC82Q8N4S0 544 aa24.72■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms