RNA–Protein interactions for RNA: ENST00000360280.7

VPS13A-203, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13A, Length 15,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-203ENST00000360280 ZNF75DP51815 510 aa10.23□□□□□ -0.77
VPS13A-203ENST00000360280 TMTC4Q5T4D3 741 aa10.23□□□□□ -0.77
VPS13A-203ENST00000360280 ZBTB3Q9H5J0 574 aa10.23□□□□□ -0.77
VPS13A-203ENST00000360280 SCAF11Q99590 1463 aaKnown RBP10.23□□□□□ -0.77
VPS13A-203ENST00000360280 GPTP24298 496 aa10.23□□□□□ -0.77
VPS13A-203ENST00000360280 USP6NLQ92738 828 aa10.23□□□□□ -0.77
VPS13A-203ENST00000360280 IL9RQ01113 521 aa10.23□□□□□ -0.77
VPS13A-203ENST00000360280 TRIM42Q8IWZ5 723 aa10.22□□□□□ -0.77
VPS13A-203ENST00000360280 BBOF1Q8ND07 529 aa10.22□□□□□ -0.77
VPS13A-203ENST00000360280 MRFAP1L1Q96HT8 127 aa10.22□□□□□ -0.77
VPS13A-203ENST00000360280 CCDC138Q96M89 665 aa10.22□□□□□ -0.77
VPS13A-203ENST00000360280 ANGPTL3Q9Y5C1 460 aa10.22□□□□□ -0.77
VPS13A-203ENST00000360280 ARHGEF9O43307 516 aa10.22□□□□□ -0.77
VPS13A-203ENST00000360280 NBPF5PQ86XG9 351 aaPredicted RBP10.22□□□□□ -0.77
VPS13A-203ENST00000360280 GRAMD4Q6IC98 578 aa10.22□□□□□ -0.77
VPS13A-203ENST00000360280 ANKLE2Q86XL3 938 aa10.22□□□□□ -0.77
VPS13A-203ENST00000360280 SERPINI1Q99574 410 aa10.22□□□□□ -0.77
VPS13A-203ENST00000360280 KCNH3Q9ULD8 1083 aa10.22□□□□□ -0.77
VPS13A-203ENST00000360280 UTP18Q9Y5J1 556 aaKnown RBP eCLIP10.22□□□□□ -0.77
VPS13A-203ENST00000360280 SATB2Q9UPW6 733 aa10.22□□□□□ -0.77
VPS13A-203ENST00000360280 TRIM37O94972 964 aa10.22□□□□□ -0.77
VPS13A-203ENST00000360280 SEPT2Q15019 361 aa10.22□□□□□ -0.77
VPS13A-203ENST00000360280 IWS1Q96ST2 819 aa10.22□□□□□ -0.77
VPS13A-203ENST00000360280 PASKQ96RG2 1323 aa10.22□□□□□ -0.77
VPS13A-203ENST00000360280 LONRF2Q1L5Z9 754 aa10.22□□□□□ -0.77
VPS13A-203ENST00000360280 MIS12Q9H081 205 aa10.22□□□□□ -0.77
VPS13A-203ENST00000360280 DAAM1Q9Y4D1 1078 aa10.22□□□□□ -0.77
VPS13A-203ENST00000360280 SLMAPQ14BN4 828 aa10.22□□□□□ -0.77
VPS13A-203ENST00000360280 TRIM50Q86XT4 487 aa10.22□□□□□ -0.77
VPS13A-203ENST00000360280 DHX32Q7L7V1 743 aaKnown RBP10.22□□□□□ -0.77
VPS13A-203ENST00000360280 KIFC3Q9BVG8 833 aa10.22□□□□□ -0.77
VPS13A-203ENST00000360280 APOBRQ0VD83 1088 aa10.22□□□□□ -0.77
VPS13A-203ENST00000360280 ABTB1Q969K4 478 aaPredicted RBP10.22□□□□□ -0.77
VPS13A-203ENST00000360280 ANGPTL2Q9UKU9 493 aa10.22□□□□□ -0.77
VPS13A-203ENST00000360280 POTEB3A0JP26 581 aa10.21□□□□□ -0.77
VPS13A-203ENST00000360280 STAM2O75886 525 aa10.21□□□□□ -0.77
VPS13A-203ENST00000360280 ATP1A2P50993 1020 aa10.21□□□□□ -0.77
VPS13A-203ENST00000360280 KRT81Q14533 505 aa10.21□□□□□ -0.77
VPS13A-203ENST00000360280 POTEBQ6S5H4 581 aa10.21□□□□□ -0.77
VPS13A-203ENST00000360280 RNF113AO15541 343 aaKnown RBP10.21□□□□□ -0.77
VPS13A-203ENST00000360280 LIG3P49916 1009 aa10.21□□□□□ -0.77
VPS13A-203ENST00000360280 CYB5RLQ6IPT4 315 aa10.21□□□□□ -0.77
VPS13A-203ENST00000360280 YY1AP1Q9H869 796 aa10.21□□□□□ -0.77
VPS13A-203ENST00000360280 GRM8O00222 908 aa10.21□□□□□ -0.77
VPS13A-203ENST00000360280 KRIT1O00522 736 aa10.21□□□□□ -0.77
VPS13A-203ENST00000360280 ADCY8P40145 1251 aa10.21□□□□□ -0.77
VPS13A-203ENST00000360280 C16orf87Q6PH81 154 aa10.21□□□□□ -0.77
VPS13A-203ENST00000360280 ANKRD13DQ6ZTN6 518 aa10.21□□□□□ -0.77
VPS13A-203ENST00000360280 PDZD4Q76G19 769 aaPredicted RBP10.21□□□□□ -0.77
VPS13A-203ENST00000360280 ESYT2A0FGR8 921 aa10.21□□□□□ -0.77
VPS13A-203ENST00000360280 PI4KAP2A4QPH2 592 aa10.21□□□□□ -0.77
VPS13A-203ENST00000360280 EEF1B2P24534 225 aaKnown RBP10.21□□□□□ -0.77
VPS13A-203ENST00000360280 NMIQ13287 307 aaPredicted RBP10.21□□□□□ -0.77
VPS13A-203ENST00000360280 LARP7Q4G0J3 582 aaKnown RBP eCLIP10.21□□□□□ -0.77
VPS13A-203ENST00000360280 ST13P4Q8IZP2 240 aaPredicted RBP10.21□□□□□ -0.77
VPS13A-203ENST00000360280 PI4KAP1Q8N8J0 262 aa10.21□□□□□ -0.77
VPS13A-203ENST00000360280 TSC1Q92574 1164 aa10.21□□□□□ -0.77
VPS13A-203ENST00000360280 PSMB7Q99436 277 aa10.21□□□□□ -0.77
VPS13A-203ENST00000360280 HMGB3O15347 200 aaKnown RBP10.21□□□□□ -0.77
VPS13A-203ENST00000360280 POMGNT1Q8WZA1 660 aa10.21□□□□□ -0.77
VPS13A-203ENST00000360280 NYXQ9GZU5 481 aa10.21□□□□□ -0.77
VPS13A-203ENST00000360280 KIF21AQ7Z4S6 1674 aa10.21□□□□□ -0.77
VPS13A-203ENST00000360280 PSDA5PKW4 1024 aaPredicted RBP10.21□□□□□ -0.78
VPS13A-203ENST00000360280 CERS3Q8IU89 383 aa10.21□□□□□ -0.78
VPS13A-203ENST00000360280 ANKRD42Q8N9B4 389 aa10.21□□□□□ -0.78
VPS13A-203ENST00000360280 N4BP2L2Q92802 583 aaPredicted RBP10.21□□□□□ -0.78
VPS13A-203ENST00000360280 CSRNP1Q96S65 589 aa10.21□□□□□ -0.78
VPS13A-203ENST00000360280 WWC3Q9ULE0 1092 aa10.21□□□□□ -0.78
VPS13A-203ENST00000360280 KDM2BQ8NHM5 1336 aa10.21□□□□□ -0.78
VPS13A-203ENST00000360280 PDXDC1Q6P996 788 aa10.21□□□□□ -0.78
VPS13A-203ENST00000360280 USTQ9Y2C2 406 aa10.21□□□□□ -0.78
VPS13A-203ENST00000360280 CD2APQ9Y5K6 639 aa10.21□□□□□ -0.78
VPS13A-203ENST00000360280 COPG1Q9Y678 874 aaKnown RBP10.21□□□□□ -0.78
VPS13A-203ENST00000360280 KCNG1Q9UIX4 513 aa10.21□□□□□ -0.78
VPS13A-203ENST00000360280 TRIM60Q495X7 471 aa10.21□□□□□ -0.78
VPS13A-203ENST00000360280 BRDTQ58F21 947 aaPredicted RBP10.21□□□□□ -0.78
VPS13A-203ENST00000360280 TROQ12816 1431 aaPredicted RBP10.2□□□□□ -0.78
VPS13A-203ENST00000360280 SNAPC4Q5SXM2 1469 aa10.2□□□□□ -0.78
VPS13A-203ENST00000360280 SNRPA1P09661 255 aaKnown RBP10.2□□□□□ -0.78
VPS13A-203ENST00000360280 GUCY2FP51841 1108 aa10.2□□□□□ -0.78
VPS13A-203ENST00000360280 KRT80Q6KB66 452 aa10.2□□□□□ -0.78
VPS13A-203ENST00000360280 MCM9Q9NXL9 1143 aa10.2□□□□□ -0.78
VPS13A-203ENST00000360280 PACSIN2Q9UNF0 486 aaPredicted RBP10.2□□□□□ -0.78
VPS13A-203ENST00000360280 S100BP04271 92 aaPredicted RBP10.2□□□□□ -0.78
VPS13A-203ENST00000360280 KCNA4P22459 653 aa10.2□□□□□ -0.78
VPS13A-203ENST00000360280 CREB3L3Q68CJ9 461 aa10.2□□□□□ -0.78
VPS13A-203ENST00000360280 CCDC197Q8NCU1 140 aa10.2□□□□□ -0.78
VPS13A-203ENST00000360280 ATP6V0A1Q93050 837 aa10.2□□□□□ -0.78
VPS13A-203ENST00000360280 FRMD3A2A2Y4 597 aa10.2□□□□□ -0.78
VPS13A-203ENST00000360280 MAP3K7O43318 606 aa10.2□□□□□ -0.78
VPS13A-203ENST00000360280 RFC4P35249 363 aa10.2□□□□□ -0.78
VPS13A-203ENST00000360280 NEK2P51955 445 aa10.2□□□□□ -0.78
VPS13A-203ENST00000360280 TUBB6Q9BUF5 446 aa10.2□□□□□ -0.78
VPS13A-203ENST00000360280 GCNT3O95395 438 aa10.2□□□□□ -0.78
VPS13A-203ENST00000360280 LETM2Q2VYF4 491 aa10.2□□□□□ -0.78
VPS13A-203ENST00000360280 SOS1Q07889 1333 aaPredicted RBP10.2□□□□□ -0.78
VPS13A-203ENST00000360280 ARHGEF35A5YM69 484 aa10.2□□□□□ -0.78
VPS13A-203ENST00000360280 NLRP12P59046 1061 aa10.2□□□□□ -0.78
VPS13A-203ENST00000360280 TRIM15Q9C019 465 aa10.2□□□□□ -0.78
VPS13A-203ENST00000360280 RRP15Q9Y3B9 282 aaKnown RBP10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms