RNA–Protein interactions for RNA: YDR486C

VPS60, Transcript of Protein involved in late endosome to vacuole transport, yeast

Gene VPS60, Length 690 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS60	YDR486C	RPL34A	P87262	121 aa	Predicted RBP	10.9	□□□□□ -0.66
VPS60	YDR486C	REG1	Q00816	1014 aa		10.9	□□□□□ -0.66
VPS60	YDR486C	LDB18	Q07887	179 aa		10.9	□□□□□ -0.66
VPS60	YDR486C	CMS1	Q07897	291 aa	Known RBP	10.9	□□□□□ -0.66
VPS60	YDR486C	YLR046C	Q12253	270 aa		10.9	□□□□□ -0.66
VPS60	YDR486C	PEX11	Q12462	236 aa		10.9	□□□□□ -0.66
VPS60	YDR486C	SSC1	P0CS90	654 aa	Known RBP	10.89	□□□□□ -0.67
VPS60	YDR486C	INO1	P11986	533 aa		10.89	□□□□□ -0.67
VPS60	YDR486C	SRV2	P17555	526 aa	Known RBP	10.89	□□□□□ -0.67
VPS60	YDR486C	CLN1	P20437	546 aa		10.89	□□□□□ -0.67
VPS60	YDR486C	MRPL8	P22353	238 aa		10.89	□□□□□ -0.67
VPS60	YDR486C	AMS1	P22855	1083 aa		10.89	□□□□□ -0.67
VPS60	YDR486C	MIH1	P23748	554 aa		10.89	□□□□□ -0.67
VPS60	YDR486C	SET3	P36124	751 aa		10.89	□□□□□ -0.67
VPS60	YDR486C	YHR131C	P38835	850 aa		10.89	□□□□□ -0.67
VPS60	YDR486C	YCK3	P39962	524 aa		10.89	□□□□□ -0.67
VPS60	YDR486C	FAR8	Q05040	523 aa		10.89	□□□□□ -0.67
VPS60	YDR486C	TDA5	Q06417	326 aa	Known RBP	10.89	□□□□□ -0.67
VPS60	YDR486C	BUD20	Q08004	166 aa	Predicted RBP	10.89	□□□□□ -0.67
VPS60	YDR486C	NCA2	Q12374	616 aa		10.89	□□□□□ -0.67
VPS60	YDR486C	KEX2	P13134	814 aa		10.88	□□□□□ -0.67
VPS60	YDR486C	KIN3	P22209	435 aa		10.88	□□□□□ -0.67
VPS60	YDR486C	GEX1	P25596	615 aa		10.88	□□□□□ -0.67
VPS60	YDR486C	SWE1	P32944	819 aa		10.88	□□□□□ -0.67
VPS60	YDR486C	GEX2	P36173	615 aa		10.88	□□□□□ -0.67
VPS60	YDR486C	ERG10	P41338	398 aa	Known RBP	10.88	□□□□□ -0.67
VPS60	YDR486C	TFG1	P41895	735 aa	Predicted RBP	10.88	□□□□□ -0.67
VPS60	YDR486C	CCT8	P47079	568 aa	Known RBP	10.88	□□□□□ -0.67
VPS60	YDR486C	HST2	P53686	357 aa		10.88	□□□□□ -0.67
VPS60	YDR486C	RSC4	Q02206	625 aa		10.88	□□□□□ -0.67
VPS60	YDR486C	NHX1	Q04121	633 aa		10.88	□□□□□ -0.67
VPS60	YDR486C	DAP1	Q12091	152 aa		10.88	□□□□□ -0.67
VPS60	YDR486C	ERG20	P08524	352 aa	Known RBP	10.87	□□□□□ -0.67
VPS60	YDR486C	SST2	P11972	698 aa	Known RBP	10.87	□□□□□ -0.67
VPS60	YDR486C	BET2	P20133	325 aa		10.87	□□□□□ -0.67
VPS60	YDR486C	DAL81	P21657	970 aa		10.87	□□□□□ -0.67
VPS60	YDR486C	GDA1	P32621	518 aa		10.87	□□□□□ -0.67
VPS60	YDR486C	YKL097C	P34245	136 aa		10.87	□□□□□ -0.67
VPS60	YDR486C	MED6	P38782	295 aa		10.87	□□□□□ -0.67
VPS60	YDR486C	GGA2	P38817	585 aa	Known RBP	10.87	□□□□□ -0.67
VPS60	YDR486C	REV7	P38927	245 aa		10.87	□□□□□ -0.67
VPS60	YDR486C	DUN1	P39009	513 aa		10.87	□□□□□ -0.67
VPS60	YDR486C	DOT6	P40059	670 aa	Known RBP	10.87	□□□□□ -0.67
VPS60	YDR486C	DSN1	P40568	576 aa		10.87	□□□□□ -0.67
VPS60	YDR486C	CHS6	P40955	746 aa		10.87	□□□□□ -0.67
VPS60	YDR486C	BUD13	P46947	266 aa	Predicted RBP	10.87	□□□□□ -0.67
VPS60	YDR486C	VEL1	P53058	206 aa		10.87	□□□□□ -0.67
VPS60	YDR486C	LSC1	P53598	329 aa	Known RBP	10.87	□□□□□ -0.67
VPS60	YDR486C	BIO4	P53630	237 aa		10.87	□□□□□ -0.67
VPS60	YDR486C	NUP100	Q02629	959 aa		10.87	□□□□□ -0.67
VPS60	YDR486C	PIR1	Q03178	341 aa		10.87	□□□□□ -0.67
VPS60	YDR486C	TRS31	Q03337	283 aa		10.87	□□□□□ -0.67
VPS60	YDR486C	YHM2	Q04013	314 aa		10.87	□□□□□ -0.67
VPS60	YDR486C	YSH1	Q06224	779 aa	Predicted RBP	10.87	□□□□□ -0.67
VPS60	YDR486C	VHS3	Q08438	674 aa		10.87	□□□□□ -0.67
VPS60	YDR486C	HSP26	P15992	214 aa	Known RBP RIP-Chip data	10.86	□□□□□ -0.67	not detected
VPS60	YDR486C	YKR023W	P36119	530 aa	Known RBP	10.86	□□□□□ -0.67
VPS60	YDR486C	RDH54	P38086	958 aa		10.86	□□□□□ -0.67
VPS60	YDR486C	SEO1	P39709	593 aa		10.86	□□□□□ -0.67
VPS60	YDR486C	SLX8	P40072	274 aa		10.86	□□□□□ -0.67
VPS60	YDR486C	RAD26	P40352	1085 aa		10.86	□□□□□ -0.67
VPS60	YDR486C	AIM14	P53109	570 aa		10.86	□□□□□ -0.67
VPS60	YDR486C	YTP1	P53584	459 aa		10.86	□□□□□ -0.67
VPS60	YDR486C	CDC123	Q05791	360 aa		10.86	□□□□□ -0.67
VPS60	YDR486C	YLR053C	Q12026	108 aa		10.86	□□□□□ -0.67
VPS60	YDR486C	SLP1	Q12232	587 aa		10.86	□□□□□ -0.67
VPS60	YDR486C	SCH9	P11792	824 aa	Known RBP	10.85	□□□□□ -0.67
VPS60	YDR486C	ATP12	P22135	325 aa		10.85	□□□□□ -0.67
VPS60	YDR486C	RBK1	P25332	333 aa		10.85	□□□□□ -0.67
VPS60	YDR486C	SGF29	P25554	259 aa		10.85	□□□□□ -0.67
VPS60	YDR486C	IMG2	P25642	146 aa	Predicted RBP	10.85	□□□□□ -0.67
VPS60	YDR486C	PPZ1	P26570	692 aa		10.85	□□□□□ -0.67
VPS60	YDR486C	KIP2	P28743	706 aa		10.85	□□□□□ -0.67
VPS60	YDR486C	STE5	P32917	917 aa		10.85	□□□□□ -0.67
VPS60	YDR486C	ALY1	P36117	915 aa		10.85	□□□□□ -0.67
VPS60	YDR486C	TFA2	P36145	328 aa		10.85	□□□□□ -0.67
VPS60	YDR486C	YHI9	P38765	294 aa		10.85	□□□□□ -0.67
VPS60	YDR486C	VPS41	P38959	992 aa		10.85	□□□□□ -0.67
VPS60	YDR486C	MEF2	P39677	819 aa		10.85	□□□□□ -0.67
VPS60	YDR486C	PAN6	P40459	309 aa		10.85	□□□□□ -0.67
VPS60	YDR486C	TRS85	P46944	698 aa		10.85	□□□□□ -0.67
VPS60	YDR486C	AIM23	P47015	356 aa		10.85	□□□□□ -0.67
VPS60	YDR486C	SAP4	P53036	818 aa		10.85	□□□□□ -0.67
VPS60	YDR486C	IPI3	P53877	555 aa		10.85	□□□□□ -0.67
VPS60	YDR486C	NOP15	P53927	220 aa	Predicted RBP	10.85	□□□□□ -0.67
VPS60	YDR486C	SFB2	P53953	876 aa		10.85	□□□□□ -0.67
VPS60	YDR486C	TRE2	Q08693	809 aa		10.85	□□□□□ -0.67
VPS60	YDR486C	YSP3	P25036	478 aa		10.84	□□□□□ -0.67
VPS60	YDR486C	DCC1	P25559	380 aa		10.84	□□□□□ -0.67
VPS60	YDR486C	CYM1	P32898	989 aa		10.84	□□□□□ -0.67
VPS60	YDR486C	MRP21	P38175	177 aa		10.84	□□□□□ -0.67
VPS60	YDR486C	SSP120	P39931	234 aa	Known RBP	10.84	□□□□□ -0.67
VPS60	YDR486C	YJL107C	P42947	387 aa		10.84	□□□□□ -0.67
VPS60	YDR486C	GYP8	P43570	497 aa		10.84	□□□□□ -0.67
VPS60	YDR486C	RSC2	Q06488	889 aa		10.84	□□□□□ -0.67
VPS60	YDR486C	FLC1	Q08967	793 aa		10.84	□□□□□ -0.67
VPS60	YDR486C	PER33	Q12144	273 aa		10.84	□□□□□ -0.67
VPS60	YDR486C	YLR149C	Q99296	730 aa		10.84	□□□□□ -0.67
VPS60	YDR486C	SEC14	P24280	304 aa	Known RBP	10.83	□□□□□ -0.68
VPS60	YDR486C	AEP1	P32493	518 aa		10.83	□□□□□ -0.68

Retrieved 100 of 5,963 RNA–protein pairs in 107.7 ms